Wall clock time and date at job start Tue Mar 31 2020 22:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00350 * 2 1 4 4 C 1.53003 * 109.46960 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46661 * 174.92898 * 4 3 2 6 6 C 1.50692 * 112.85306 * 54.26657 * 5 4 3 7 7 O 1.21281 * 120.00413 * 250.39810 * 6 5 4 8 8 N 1.34780 * 120.00386 * 70.39967 * 6 5 4 9 9 C 1.46925 * 120.62433 * 355.55498 * 8 6 5 10 10 C 1.52757 * 109.01060 * 233.58337 * 9 8 6 11 11 C 1.53051 * 109.38521 * 305.59270 * 10 9 8 12 12 C 1.53039 * 109.53331 * 61.23640 * 11 10 9 13 13 H 1.09001 * 109.52729 * 58.60676 * 12 11 10 14 14 C 1.53007 * 109.49253 * 178.68769 * 12 11 10 15 15 C 1.53001 * 109.46916 * 294.83598 * 14 12 11 16 16 N 1.46496 * 109.46979 * 180.02562 * 15 14 12 17 17 C 1.36938 * 119.99877 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00123 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99759 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00251 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99907 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47220 * 59.99783 * 21 19 17 23 23 H 1.48491 * 109.47100 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47020 * 299.99847 * 21 19 17 25 25 C 1.46923 * 120.63501 * 175.83790 * 8 6 5 26 26 C 1.53785 * 113.61265 * 282.95890 * 5 4 3 27 27 C 1.53792 * 87.07853 * 220.02181 * 26 5 4 28 28 C 1.53780 * 87.08117 * 25.43461 * 27 26 5 29 29 H 1.09004 * 109.47257 * 300.00670 * 1 2 3 30 30 H 1.09008 * 109.46694 * 60.00150 * 1 2 3 31 31 H 1.09000 * 109.47527 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47059 * 299.99485 * 3 2 1 33 33 H 1.08993 * 109.47000 * 59.99578 * 3 2 1 34 34 H 1.09002 * 109.47160 * 294.92211 * 4 3 2 35 35 H 1.08995 * 109.47425 * 54.93002 * 4 3 2 36 36 H 1.08997 * 109.59238 * 353.41974 * 9 8 6 37 37 H 1.09007 * 109.58788 * 113.84680 * 9 8 6 38 38 H 1.09003 * 109.56864 * 185.55716 * 10 9 8 39 39 H 1.09005 * 109.36372 * 65.50177 * 10 9 8 40 40 H 1.09001 * 109.45219 * 301.21976 * 11 10 9 41 41 H 1.08995 * 109.44813 * 181.25312 * 11 10 9 42 42 H 1.08991 * 109.47214 * 54.83483 * 14 12 11 43 43 H 1.09004 * 109.46837 * 174.84089 * 14 12 11 44 44 H 1.08997 * 109.47161 * 300.00426 * 15 14 12 45 45 H 1.08997 * 109.46716 * 60.00262 * 15 14 12 46 46 H 0.96998 * 120.00350 * 359.97438 * 16 15 14 47 47 H 0.96996 * 119.99816 * 180.02562 * 20 19 17 48 48 H 1.09002 * 109.58458 * 246.15570 * 25 8 6 49 49 H 1.08999 * 109.58522 * 6.57905 * 25 8 6 50 50 H 1.08999 * 113.61126 * 334.56729 * 26 5 4 51 51 H 1.08995 * 113.61595 * 105.47646 * 26 5 4 52 52 H 1.08997 * 113.60991 * 270.88233 * 27 26 5 53 53 H 1.08995 * 113.61152 * 139.98394 * 27 26 5 54 54 H 1.08998 * 113.60925 * 220.02134 * 28 27 26 55 55 H 1.08999 * 113.69242 * 89.12581 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1574 2.5765 -0.1269 6 6 3.6618 3.5374 0.9229 7 8 2.9290 4.4519 0.6105 8 7 4.0328 3.3805 2.2091 9 6 4.8400 2.2235 2.6195 10 6 4.1377 1.5112 3.7740 11 6 3.8601 2.5142 4.8962 12 6 2.9392 3.6208 4.3771 13 1 2.0085 3.1816 4.0178 14 6 2.6359 4.6053 5.5086 15 6 1.8336 3.8953 6.6009 16 7 1.5428 4.8380 7.6839 17 6 0.8309 4.4249 8.7783 18 1 0.4836 3.4043 8.8429 19 6 0.5558 5.3180 9.8048 20 7 0.9795 6.5617 9.7263 21 14 -0.4159 4.7548 11.2975 22 1 0.3085 3.6469 11.9705 23 1 -0.5739 5.8895 12.2422 24 1 -1.7554 4.2805 10.8660 25 6 3.6327 4.3600 3.2285 26 6 4.1101 3.1439 -1.5555 27 6 5.5281 3.6834 -1.3038 28 6 5.6885 2.5564 -0.2699 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8463 -0.8900 33 1 1.6886 1.8463 0.8899 34 1 3.8631 0.7242 0.9328 35 1 3.8514 0.5670 -0.8401 36 1 4.9478 1.5368 1.7799 37 1 5.8234 2.5614 2.9465 38 1 4.7746 0.7109 4.1508 39 1 3.1960 1.0913 3.4203 40 1 4.8000 2.9519 5.2325 41 1 3.3790 2.0025 5.7296 42 1 3.5711 4.9763 5.9277 43 1 2.0562 5.4412 5.1171 44 1 0.8984 3.5242 6.1817 45 1 2.4134 3.0594 6.9922 46 1 1.8550 5.7545 7.6261 47 1 0.7876 7.1856 10.4438 48 1 4.5156 4.8758 3.6061 49 1 2.9442 5.0827 2.7905 50 1 4.0656 2.3768 -2.3286 51 1 3.3629 3.9259 -1.6902 52 1 5.5441 4.6820 -0.8673 53 1 6.1914 3.5853 -2.1631 54 1 6.2154 2.8643 0.6332 55 1 6.0756 1.6282 -0.6903 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732286486.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:41 Heat of formation + Delta-G solvation = -84.604893 kcal Electronic energy + Delta-G solvation = -31082.690321 eV Core-core repulsion = 27119.203892 eV Total energy + Delta-G solvation = -3963.486429 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.24774 -39.76228 -38.80177 -38.16759 -36.98325 -35.04375 -33.21504 -32.96201 -32.35498 -29.40138 -27.97037 -26.90489 -26.75682 -25.92264 -25.49221 -23.69329 -23.34575 -22.72414 -21.83490 -20.85032 -19.44136 -19.07842 -17.65552 -17.57063 -17.27385 -16.87898 -16.81687 -16.40313 -16.04825 -15.96729 -15.70829 -15.55275 -15.32254 -15.22076 -14.90349 -14.68907 -14.45922 -14.18766 -13.91758 -13.80294 -13.48904 -13.32067 -13.15852 -12.97478 -12.86669 -12.72893 -12.45687 -12.44905 -12.29548 -12.20003 -12.11086 -12.01313 -11.83729 -11.78862 -11.70599 -11.54046 -11.29910 -11.28989 -11.15552 -10.92741 -10.75294 -10.59730 -9.66099 -9.03157 -7.97843 -5.27644 1.44941 1.48810 1.53037 1.55090 1.91820 2.54099 2.66362 3.31299 3.35295 3.48528 3.58067 3.66440 3.77044 3.84090 3.88048 3.95416 4.02211 4.07589 4.13593 4.19596 4.32005 4.36035 4.39966 4.43555 4.48060 4.51404 4.53671 4.55751 4.62135 4.73612 4.76191 4.78607 4.81871 4.82183 4.85976 4.87181 4.91892 4.95803 5.04725 5.07675 5.11173 5.13532 5.21474 5.23508 5.30392 5.41365 5.43859 5.45654 5.49089 5.53774 6.09250 6.24503 6.39097 7.11245 7.30033 8.06085 8.29577 9.25772 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015176 B = 0.002372 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.615487 B =11802.267560 C =12651.621562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.062 3.938 4 C -0.095 4.095 5 C -0.106 4.106 6 C 0.533 3.467 7 O -0.586 6.586 8 N -0.603 5.603 9 C 0.094 3.906 10 C -0.130 4.130 11 C -0.116 4.116 12 C -0.082 4.082 13 H 0.056 0.944 14 C -0.107 4.107 15 C 0.156 3.844 16 N -0.749 5.749 17 C -0.250 4.250 18 H 0.075 0.925 19 C -0.077 4.077 20 N -0.971 5.971 21 Si 0.977 3.023 22 H -0.274 1.274 23 H -0.293 1.293 24 H -0.278 1.278 25 C 0.120 3.880 26 C -0.121 4.121 27 C -0.143 4.143 28 C -0.112 4.112 29 H 0.035 0.965 30 H 0.048 0.952 31 H 0.105 0.895 32 H 0.048 0.952 33 H 0.022 0.978 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.008 0.992 45 H 0.030 0.970 46 H 0.373 0.627 47 H 0.252 0.748 48 H 0.081 0.919 49 H 0.066 0.934 50 H 0.114 0.886 51 H 0.053 0.947 52 H 0.057 0.943 53 H 0.093 0.907 54 H 0.078 0.922 55 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.852 -15.721 -26.201 33.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.014 4.014 4 C -0.132 4.132 5 C -0.109 4.109 6 C 0.322 3.678 7 O -0.466 6.466 8 N -0.335 5.335 9 C -0.027 4.027 10 C -0.168 4.168 11 C -0.153 4.153 12 C -0.102 4.102 13 H 0.075 0.925 14 C -0.146 4.146 15 C 0.029 3.971 16 N -0.392 5.392 17 C -0.382 4.382 18 H 0.093 0.907 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.805 3.195 22 H -0.200 1.200 23 H -0.219 1.219 24 H -0.205 1.205 25 C -0.003 4.003 26 C -0.159 4.159 27 C -0.180 4.180 28 C -0.149 4.149 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.041 0.959 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.026 0.974 45 H 0.048 0.952 46 H 0.205 0.795 47 H 0.061 0.939 48 H 0.099 0.901 49 H 0.084 0.916 50 H 0.132 0.868 51 H 0.071 0.929 52 H 0.076 0.924 53 H 0.112 0.888 54 H 0.097 0.903 55 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.499 -15.540 -26.259 32.973 hybrid contribution -1.379 1.130 1.250 2.177 sum 11.120 -14.410 -25.009 30.932 Atomic orbital electron populations 1.22905 0.79959 1.03979 1.00250 1.87792 1.20963 1.27974 1.95481 1.22490 0.95296 0.84312 0.99334 1.21629 0.91776 0.94249 1.05589 1.21943 0.99727 0.94163 0.95109 1.20579 0.79091 0.84843 0.83300 1.90671 1.38478 1.35908 1.81579 1.48142 1.52831 1.25696 1.06786 1.22236 0.94355 0.86939 0.99135 1.21854 1.01488 0.98334 0.95144 1.21626 0.99506 0.95902 0.98271 1.21277 0.98782 0.96209 0.93937 0.92525 1.21557 1.00036 0.97979 0.94979 1.20796 0.95772 0.92550 0.87938 1.42625 1.65910 1.10928 1.19735 1.19619 1.25982 0.95885 0.96720 0.90732 1.25637 1.03204 0.95965 1.02101 1.69818 1.52695 1.04766 1.34851 0.85166 0.78624 0.76828 0.78880 1.20022 1.21927 1.20455 1.21543 0.99826 0.91085 0.87879 1.22969 0.97984 1.00864 0.94050 1.22810 0.96985 0.97832 1.00370 1.23141 0.90495 1.01049 1.00212 0.94674 0.93342 0.87689 0.93390 0.95941 0.89115 0.87388 0.86857 0.89283 0.87896 0.92554 0.90761 0.91938 0.91349 0.93112 0.97434 0.95211 0.79533 0.93882 0.90109 0.91584 0.86821 0.92852 0.92398 0.88827 0.90317 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.40 -8.09 10.70 -148.98 -1.59 -9.69 16 3 C 0.06 1.22 5.51 71.98 0.40 1.62 16 4 C -0.10 -1.27 4.70 30.60 0.14 -1.13 16 5 C -0.11 -1.61 0.31 -52.40 -0.02 -1.62 16 6 C 0.53 12.56 5.19 87.65 0.45 13.02 16 7 O -0.59 -19.33 15.43 -3.03 -0.05 -19.37 16 8 N -0.60 -12.59 2.98 -819.75 -2.44 -15.03 16 9 C 0.09 1.27 4.60 86.22 0.40 1.66 16 10 C -0.13 -2.00 6.06 30.53 0.19 -1.81 16 11 C -0.12 -2.47 4.96 30.62 0.15 -2.32 16 12 C -0.08 -2.17 2.34 -10.71 -0.03 -2.20 16 13 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 14 C -0.11 -3.57 4.80 30.60 0.15 -3.42 16 15 C 0.16 6.48 6.02 86.38 0.52 7.00 16 16 N -0.75 -40.00 5.60 -343.46 -1.92 -41.92 16 17 C -0.25 -14.52 9.99 84.03 0.84 -13.68 16 18 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 19 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 20 N -0.97 -60.97 13.06 21.65 0.28 -60.68 16 21 Si 0.98 46.99 29.55 68.60 2.03 49.02 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 25 C 0.12 2.99 5.73 86.36 0.49 3.48 16 26 C -0.12 -1.79 6.87 31.13 0.21 -1.58 16 27 C -0.14 -1.78 7.81 31.12 0.24 -1.54 16 28 C -0.11 -1.03 6.06 31.12 0.19 -0.84 16 29 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 0.96 7.93 -2.39 -0.02 0.94 16 33 H 0.02 0.55 7.46 -2.39 -0.02 0.53 16 34 H 0.09 1.07 5.71 -2.39 -0.01 1.05 16 35 H 0.11 1.01 8.06 -2.39 -0.02 0.99 16 36 H 0.11 1.07 3.40 -2.39 -0.01 1.06 16 37 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.51 6.51 -2.39 -0.02 1.50 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.03 1.20 6.54 -2.39 -0.02 1.19 16 46 H 0.37 21.08 7.67 -92.71 -0.71 20.36 16 47 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 48 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.07 2.01 7.00 -2.39 -0.02 1.99 16 50 H 0.11 1.12 8.04 -2.39 -0.02 1.10 16 51 H 0.05 1.12 7.37 -2.39 -0.02 1.10 16 52 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 53 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 54 H 0.08 0.72 6.81 -2.39 -0.02 0.70 16 55 H 0.13 0.45 8.10 -2.39 -0.02 0.43 16 Total: -1.00 -75.36 416.82 2.50 -72.86 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.15 Total: 30.60 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 6.05 Total: -5.77 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -4.08 Total: -117.64 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -1.64 Total: -29.06 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -75.36 2.50 -72.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732286486.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.747 kcal (2) G-P(sol) polarization free energy of solvation -75.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds