Wall clock time and date at job start Tue Mar 31 2020 22:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00010 * 2 1 4 4 C 1.53005 * 109.47081 * 184.64563 * 3 2 1 5 5 C 1.52999 * 109.46895 * 174.26008 * 4 3 2 6 6 C 1.50701 * 112.84816 * 61.88019 * 5 4 3 7 7 O 1.21276 * 119.99915 * 242.32297 * 6 5 4 8 8 N 1.34781 * 119.99848 * 62.33019 * 6 5 4 9 9 C 1.46924 * 120.62957 * 4.53263 * 8 6 5 10 10 C 1.53192 * 108.77339 * 126.37184 * 9 8 6 11 11 C 1.53045 * 109.31614 * 54.63290 * 10 9 8 12 12 C 1.53046 * 109.53651 * 298.63622 * 11 10 9 13 13 H 1.08999 * 109.49619 * 301.37861 * 12 11 10 14 14 C 1.53002 * 109.49829 * 181.31307 * 12 11 10 15 15 C 1.52999 * 109.46901 * 65.00249 * 14 12 11 16 16 N 1.46498 * 109.47010 * 180.02562 * 15 14 12 17 17 C 1.36940 * 119.99922 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99835 * 359.97438 * 17 16 15 19 19 C 1.38816 * 119.99643 * 179.97438 * 17 16 15 20 20 N 1.31615 * 120.00245 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99720 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47105 * 59.99943 * 21 19 17 23 23 H 1.48497 * 109.47038 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47069 * 300.00361 * 21 19 17 25 25 C 1.46921 * 120.62513 * 184.25632 * 8 6 5 26 26 C 1.53777 * 113.61845 * 290.67891 * 5 4 3 27 27 C 1.53948 * 87.02293 * 220.05154 * 26 5 4 28 28 C 1.53778 * 87.11246 * 25.36419 * 27 26 5 29 29 H 1.08997 * 109.47005 * 64.67719 * 1 2 3 30 30 H 1.09006 * 109.47428 * 184.67924 * 1 2 3 31 31 H 1.08999 * 109.47247 * 304.67934 * 1 2 3 32 32 H 1.09003 * 109.47057 * 64.64813 * 3 2 1 33 33 H 1.08997 * 109.47489 * 304.64796 * 3 2 1 34 34 H 1.08994 * 109.47200 * 294.26559 * 4 3 2 35 35 H 1.08999 * 109.46529 * 54.26321 * 4 3 2 36 36 H 1.09000 * 109.58687 * 246.15410 * 9 8 6 37 37 H 1.08995 * 109.58783 * 6.58305 * 9 8 6 38 38 H 1.08998 * 109.50033 * 174.58422 * 10 9 8 39 39 H 1.08997 * 109.49966 * 294.68191 * 10 9 8 40 40 H 1.09003 * 109.45819 * 58.65363 * 11 10 9 41 41 H 1.08996 * 109.46500 * 178.63064 * 11 10 9 42 42 H 1.09000 * 109.46617 * 185.00043 * 14 12 11 43 43 H 1.08991 * 109.47117 * 305.00057 * 14 12 11 44 44 H 1.09001 * 109.46871 * 299.99994 * 15 14 12 45 45 H 1.08999 * 109.47701 * 59.99850 * 15 14 12 46 46 H 0.96997 * 119.99771 * 359.97438 * 16 15 14 47 47 H 0.97004 * 120.00047 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.59181 * 353.41351 * 25 8 6 49 49 H 1.08995 * 109.58690 * 113.84501 * 25 8 6 50 50 H 1.08999 * 113.61248 * 334.57331 * 26 5 4 51 51 H 1.09000 * 113.61010 * 105.46748 * 26 5 4 52 52 H 1.08997 * 113.53803 * 270.81303 * 27 26 5 53 53 H 1.09002 * 113.66978 * 139.93143 * 27 26 5 54 54 H 1.09003 * 113.61750 * 220.09489 * 28 27 26 55 55 H 1.08996 * 113.61902 * 89.18419 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5311 1.1865 -0.1168 5 6 4.1421 2.5818 -0.2608 6 6 3.8781 3.4623 0.9334 7 8 3.2344 4.4820 0.8044 8 7 4.3574 3.1166 2.1447 9 6 5.2214 1.9383 2.2994 10 6 6.5089 2.3614 3.0137 11 6 6.1526 3.0568 4.3297 12 6 5.3271 4.3121 4.0381 13 1 5.8977 4.9813 3.3940 14 6 4.9992 5.0243 5.3519 15 6 6.2923 5.5308 5.9939 16 7 5.9785 6.2122 7.2522 17 6 6.9848 6.7516 8.0083 18 1 8.0098 6.6743 7.6771 19 6 6.6873 7.3977 9.2003 20 7 5.4381 7.4915 9.6041 21 14 8.0599 8.1341 10.2314 22 1 8.7796 9.1615 9.4363 23 1 7.4832 8.7636 11.4464 24 1 9.0082 7.0633 10.6305 25 6 4.0308 3.9143 3.3344 26 6 3.8263 3.2569 -1.6059 27 6 5.2780 3.7692 -1.5983 28 6 5.6155 2.5666 -0.7013 29 1 -0.3633 0.4395 -0.9289 30 1 -0.3634 -1.0243 0.0838 31 1 -0.3634 0.5847 0.8451 32 1 1.7560 1.8163 0.9287 33 1 1.6243 1.8750 -0.8454 34 1 3.9278 0.7066 0.7778 35 1 3.7825 0.5877 -0.9922 36 1 4.7061 1.1827 2.8923 37 1 5.4648 1.5322 1.3177 38 1 7.1165 1.4805 3.2207 39 1 7.0681 3.0487 2.3789 40 1 5.5722 2.3774 4.9538 41 1 7.0675 3.3373 4.8516 42 1 4.3379 5.8676 5.1528 43 1 4.5058 4.3277 6.0295 44 1 6.9537 4.6875 6.1929 45 1 6.7859 6.2275 5.3163 46 1 5.0579 6.2813 7.5498 47 1 5.2302 7.9433 10.4370 48 1 3.4888 4.8115 3.0354 49 1 3.4164 3.3231 4.0134 50 1 3.6164 2.5514 -2.4098 51 1 3.0820 4.0498 -1.5322 52 1 5.3973 4.7318 -1.1011 53 1 5.7597 3.7338 -2.5755 54 1 6.3137 2.8031 0.1017 55 1 5.8957 1.6720 -1.2574 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732286487.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:45 Heat of formation + Delta-G solvation = -85.935515 kcal Electronic energy + Delta-G solvation = -30813.736294 eV Core-core repulsion = 26850.192165 eV Total energy + Delta-G solvation = -3963.544129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.24391 -39.77690 -38.78490 -38.14557 -36.97596 -35.06078 -33.27860 -32.75995 -32.40580 -29.41105 -27.95509 -26.89802 -26.79711 -25.92252 -25.46024 -23.64250 -23.44769 -22.60102 -21.84575 -20.90597 -19.41615 -19.07120 -17.69555 -17.48157 -17.24637 -16.95414 -16.75321 -16.31178 -16.13914 -15.95713 -15.84958 -15.39744 -15.30959 -15.05416 -14.96016 -14.65713 -14.53495 -14.16215 -13.92934 -13.78000 -13.47122 -13.33763 -13.18076 -12.99001 -12.85360 -12.65427 -12.46571 -12.44228 -12.29595 -12.16591 -12.12994 -11.96366 -11.83594 -11.82643 -11.70079 -11.54860 -11.29583 -11.27576 -11.16544 -10.91911 -10.72828 -10.59795 -9.66223 -9.02399 -7.97196 -5.26949 1.45372 1.49342 1.52717 1.55558 1.91539 2.54643 2.67971 3.31877 3.35914 3.49341 3.54208 3.68976 3.77571 3.84119 3.88680 3.97333 4.02740 4.10570 4.13371 4.22596 4.32763 4.36429 4.42607 4.47436 4.49513 4.52772 4.55252 4.56397 4.62629 4.74516 4.77649 4.81513 4.81633 4.82514 4.84719 4.86811 4.89839 5.00615 5.01204 5.05598 5.12306 5.13906 5.21674 5.23550 5.31397 5.41933 5.43708 5.46294 5.50475 5.52973 6.12767 6.25051 6.39165 7.11153 7.30519 8.06852 8.30073 9.26388 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018381 B = 0.002135 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.970510 B =13113.714428 C =13644.085521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.062 3.938 4 C -0.096 4.096 5 C -0.104 4.104 6 C 0.532 3.468 7 O -0.585 6.585 8 N -0.603 5.603 9 C 0.095 3.905 10 C -0.128 4.128 11 C -0.117 4.117 12 C -0.082 4.082 13 H 0.061 0.939 14 C -0.107 4.107 15 C 0.155 3.845 16 N -0.750 5.750 17 C -0.249 4.249 18 H 0.076 0.924 19 C -0.079 4.079 20 N -0.971 5.971 21 Si 0.978 3.022 22 H -0.278 1.278 23 H -0.294 1.294 24 H -0.274 1.274 25 C 0.119 3.881 26 C -0.119 4.119 27 C -0.144 4.144 28 C -0.113 4.113 29 H 0.049 0.951 30 H 0.102 0.898 31 H 0.038 0.962 32 H 0.025 0.975 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.031 0.969 45 H 0.010 0.990 46 H 0.373 0.627 47 H 0.252 0.748 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.114 0.886 51 H 0.054 0.946 52 H 0.054 0.946 53 H 0.092 0.908 54 H 0.075 0.925 55 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -20.604 -26.942 34.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.015 4.015 4 C -0.133 4.133 5 C -0.107 4.107 6 C 0.321 3.679 7 O -0.466 6.466 8 N -0.334 5.334 9 C -0.026 4.026 10 C -0.166 4.166 11 C -0.154 4.154 12 C -0.102 4.102 13 H 0.079 0.921 14 C -0.146 4.146 15 C 0.029 3.971 16 N -0.392 5.392 17 C -0.381 4.381 18 H 0.094 0.906 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.806 3.194 22 H -0.204 1.204 23 H -0.220 1.220 24 H -0.200 1.200 25 C -0.004 4.004 26 C -0.157 4.157 27 C -0.182 4.182 28 C -0.150 4.150 29 H 0.068 0.932 30 H 0.121 0.879 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.048 0.952 45 H 0.028 0.972 46 H 0.204 0.796 47 H 0.061 0.939 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.133 0.867 51 H 0.073 0.927 52 H 0.072 0.928 53 H 0.111 0.889 54 H 0.093 0.907 55 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.907 -20.212 -26.969 33.827 hybrid contribution -0.390 1.512 1.329 2.050 sum -3.296 -18.701 -25.640 31.906 Atomic orbital electron populations 1.22917 0.79830 1.03887 1.00498 1.87801 1.21123 1.28062 1.95512 1.22489 0.95091 0.84379 0.99501 1.21599 0.92206 0.93919 1.05624 1.21915 1.00804 0.94971 0.93041 1.20589 0.77883 0.85110 0.84317 1.90668 1.42707 1.27866 1.85315 1.48130 1.49692 1.29006 1.06620 1.22286 0.90518 0.86387 1.03400 1.21926 0.97046 1.01817 0.95845 1.21636 1.00008 0.95641 0.98137 1.21199 0.96321 0.97594 0.95049 0.92053 1.21554 0.97197 0.99584 0.96240 1.20806 0.95940 0.94080 0.86248 1.42636 1.06491 1.67415 1.22704 1.19623 0.89585 1.27751 1.01136 0.90637 1.25651 0.98777 1.02740 0.99903 1.69821 1.18574 1.49729 1.24033 0.85156 0.78246 0.78317 0.77711 1.20419 1.22006 1.20024 1.21442 0.96670 0.95957 0.86283 1.22961 0.97697 1.00150 0.94870 1.22835 0.96516 0.97490 1.01326 1.23145 0.91715 1.00486 0.99690 0.93195 0.87920 0.94322 0.95626 0.92978 0.89387 0.87436 0.89973 0.86764 0.87932 0.91763 0.91160 0.91726 0.93127 0.91588 0.95154 0.97206 0.79585 0.93921 0.91528 0.90610 0.86727 0.92700 0.92757 0.88905 0.90681 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -7.15 10.70 -148.98 -1.59 -8.75 16 3 C 0.06 1.06 5.61 71.98 0.40 1.46 16 4 C -0.10 -1.18 4.61 30.60 0.14 -1.04 16 5 C -0.10 -1.57 0.29 -52.40 -0.02 -1.59 16 6 C 0.53 12.58 5.59 87.66 0.49 13.07 16 7 O -0.59 -19.30 15.32 -3.02 -0.05 -19.34 16 8 N -0.60 -12.71 2.98 -819.75 -2.44 -15.15 16 9 C 0.10 1.30 4.41 86.36 0.38 1.68 16 10 C -0.13 -1.85 6.08 30.67 0.19 -1.67 16 11 C -0.12 -2.46 4.96 30.62 0.15 -2.30 16 12 C -0.08 -2.14 2.33 -10.85 -0.03 -2.16 16 13 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 14 C -0.11 -3.57 4.80 30.59 0.15 -3.42 16 15 C 0.16 6.42 6.02 86.38 0.52 6.94 16 16 N -0.75 -39.95 5.60 -343.46 -1.92 -41.87 16 17 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 18 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 19 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 20 N -0.97 -61.02 13.06 21.65 0.28 -60.74 16 21 Si 0.98 46.97 29.55 68.60 2.03 48.99 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 C 0.12 3.02 5.70 86.22 0.49 3.51 16 26 C -0.12 -1.79 6.47 31.18 0.20 -1.59 16 27 C -0.14 -2.02 7.81 31.18 0.24 -1.78 16 28 C -0.11 -1.17 5.90 31.12 0.18 -0.99 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.03 0.54 7.66 -2.39 -0.02 0.52 16 33 H 0.05 0.87 7.60 -2.39 -0.02 0.86 16 34 H 0.09 0.97 5.71 -2.39 -0.01 0.96 16 35 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 37 H 0.11 1.06 3.71 -2.39 -0.01 1.05 16 38 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.52 6.50 -2.39 -0.02 1.51 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.03 1.21 6.54 -2.39 -0.02 1.20 16 45 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.37 21.06 7.67 -92.71 -0.71 20.35 16 47 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 48 H 0.07 2.03 7.00 -2.39 -0.02 2.02 16 49 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.11 1.11 8.10 -2.39 -0.02 1.09 16 51 H 0.05 1.15 7.34 -2.39 -0.02 1.14 16 52 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 54 H 0.07 0.84 6.97 -2.39 -0.02 0.83 16 55 H 0.13 0.55 8.10 -2.39 -0.02 0.53 16 Total: -1.00 -75.19 416.74 2.50 -72.69 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.15 Total: 30.23 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 6.05 Total: -6.06 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -4.08 Total: -117.76 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -1.64 Total: -28.09 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 48.99 kcal Total: -75.19 2.50 -72.69 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732286487.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.249 kcal (2) G-P(sol) polarization free energy of solvation -75.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds