Wall clock time and date at job start Tue Mar 31 2020 22:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00293 * 2 1 4 4 C 1.52997 * 109.46994 * 180.02562 * 3 2 1 5 5 C 1.50697 * 110.43697 * 300.69825 * 4 3 2 6 6 O 1.21284 * 120.00520 * 239.30233 * 5 4 3 7 7 N 1.34776 * 119.99762 * 59.30279 * 5 4 3 8 8 C 1.46501 * 120.00262 * 180.02562 * 7 5 4 9 9 H 1.09008 * 109.46759 * 325.00111 * 8 7 5 10 10 C 1.52999 * 109.47508 * 84.99676 * 8 7 5 11 11 C 1.52992 * 109.47260 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47408 * 300.00315 * 11 10 8 13 13 C 1.52991 * 109.46961 * 60.00048 * 12 11 10 14 14 C 1.52992 * 109.47325 * 299.99958 * 13 12 11 15 15 H 1.09002 * 109.47301 * 300.00036 * 14 13 12 16 16 C 1.53005 * 109.47688 * 180.02562 * 14 13 12 17 17 N 1.46505 * 109.46904 * 64.99823 * 16 14 13 18 18 C 1.36931 * 119.99788 * 180.02562 * 17 16 14 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 16 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48508 * 109.46872 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47141 * 119.99997 * 22 20 18 25 25 H 1.48498 * 109.47018 * 240.00044 * 22 20 18 26 26 C 1.54887 * 110.48750 * 63.24433 * 4 3 2 27 27 C 1.55244 * 102.58790 * 156.67303 * 26 4 3 28 28 C 1.54271 * 104.22907 * 322.08706 * 27 26 4 29 29 C 1.53874 * 106.60203 * 23.60822 * 28 27 26 30 30 H 1.08992 * 109.47479 * 59.99265 * 1 2 3 31 31 H 1.08998 * 109.47431 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46646 * 299.99512 * 1 2 3 33 33 H 1.09004 * 109.46748 * 60.00419 * 3 2 1 34 34 H 1.08995 * 109.47104 * 300.00640 * 3 2 1 35 35 H 0.96994 * 120.00134 * 0.02562 * 7 5 4 36 36 H 1.08993 * 109.47287 * 300.00601 * 10 8 7 37 37 H 1.09002 * 109.46515 * 60.00079 * 10 8 7 38 38 H 1.09002 * 109.47264 * 60.00572 * 11 10 8 39 39 H 1.09008 * 109.47188 * 179.97438 * 11 10 8 40 40 H 1.09003 * 109.46775 * 180.02562 * 12 11 10 41 41 H 1.08993 * 109.46848 * 299.99794 * 12 11 10 42 42 H 1.09002 * 109.47351 * 179.97438 * 13 12 11 43 43 H 1.09007 * 109.47647 * 60.00140 * 13 12 11 44 44 H 1.09003 * 109.46946 * 305.00582 * 16 14 13 45 45 H 1.08993 * 109.47679 * 185.00125 * 16 14 13 46 46 H 0.97000 * 119.99792 * 0.02562 * 17 16 14 47 47 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 48 48 H 1.09001 * 110.75622 * 275.06093 * 26 4 3 49 49 H 1.08992 * 110.75501 * 38.44102 * 26 4 3 50 50 H 1.08992 * 110.47137 * 203.39392 * 27 26 4 51 51 H 1.09008 * 110.57909 * 80.82801 * 27 26 4 52 52 H 1.09004 * 110.03024 * 264.32216 * 28 27 26 53 53 H 1.09004 * 110.07076 * 142.92261 * 28 27 26 54 54 H 1.08995 * 110.02981 * 240.71642 * 29 28 27 55 55 H 1.09003 * 110.06744 * 119.30834 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1845 -0.0006 5 6 4.0035 0.4241 1.2133 6 8 4.7618 0.9477 2.0018 7 7 3.5794 -0.8380 1.4227 8 6 4.0340 -1.5772 2.6030 9 1 5.0636 -1.3008 2.8305 10 6 3.1387 -1.2345 3.7955 11 6 3.6130 -2.0070 5.0279 12 6 3.5375 -3.5094 4.7485 13 6 4.4328 -3.8520 3.5562 14 6 3.9585 -3.0796 2.3237 15 1 2.9289 -3.3555 2.0960 16 6 4.8535 -3.4226 1.1311 17 7 4.6896 -4.8376 0.7885 18 6 5.3960 -5.3760 -0.2536 19 1 6.0744 -4.7578 -0.8228 20 6 5.2449 -6.7181 -0.5745 21 7 4.4186 -7.4717 0.1195 22 14 6.2144 -7.4545 -1.9913 23 1 7.0663 -6.4051 -2.6064 24 1 7.0726 -8.5554 -1.4845 25 1 5.2746 -7.9883 -3.0096 26 6 4.0237 0.4908 -1.2965 27 6 5.4893 0.9888 -1.4153 28 6 5.4299 2.4573 -0.9464 29 6 4.1877 2.5818 -0.0470 30 1 -0.3634 0.5139 -0.8898 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6887 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 2.9733 -1.2569 0.7919 36 1 3.1921 -0.1642 3.9942 37 1 2.1091 -1.5109 3.5679 38 1 4.6426 -1.7311 5.2557 39 1 2.9754 -1.7625 5.8776 40 1 3.8750 -4.0596 5.6269 41 1 2.5079 -3.7852 4.5209 42 1 4.3795 -4.9224 3.3574 43 1 5.4626 -3.5761 3.7838 44 1 5.8945 -3.2300 1.3907 45 1 4.5723 -2.8070 0.2767 46 1 4.0806 -5.3930 1.3000 47 1 4.3128 -8.4094 -0.1050 48 1 3.9889 -0.5935 -1.1909 49 1 3.4346 0.8156 -2.1540 50 1 5.8285 0.9320 -2.4495 51 1 6.1452 0.4076 -0.7671 52 1 5.3362 3.1204 -1.8065 53 1 6.3276 2.7057 -0.3800 54 1 3.4911 3.3052 -0.4705 55 1 4.4817 2.8902 0.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733073206.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:06 Heat of formation + Delta-G solvation = -124.251203 kcal Electronic energy + Delta-G solvation = -32206.167081 eV Core-core repulsion = 28240.961459 eV Total energy + Delta-G solvation = -3965.205622 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.74526 -40.03222 -38.61897 -37.64574 -36.41784 -35.11640 -33.68872 -32.00361 -31.23043 -30.32572 -29.48272 -27.54524 -26.95557 -25.28090 -24.73088 -24.26076 -22.44303 -21.98905 -21.33190 -21.13387 -20.02349 -19.18803 -18.06236 -17.37531 -17.09009 -16.80908 -16.68752 -16.46934 -16.15145 -15.70985 -15.56486 -15.41683 -15.12642 -15.10829 -14.78927 -14.58513 -14.23882 -14.18838 -13.99908 -13.67315 -13.33281 -13.25889 -12.95491 -12.77678 -12.67146 -12.48262 -12.37002 -12.21160 -12.19816 -12.07944 -12.03014 -11.97154 -11.93348 -11.86078 -11.69071 -11.51207 -11.37190 -11.28625 -11.12033 -10.95214 -10.70334 -10.46570 -9.87529 -8.98883 -7.94994 -5.23176 1.46433 1.46977 1.57097 1.68950 2.26061 2.55304 2.76397 3.38259 3.52754 3.54653 3.59584 3.77468 3.79584 3.95149 4.01332 4.09469 4.24362 4.25743 4.28771 4.37609 4.45227 4.48185 4.50458 4.52837 4.54523 4.56300 4.57342 4.59782 4.63592 4.74915 4.78912 4.83939 4.87103 4.94660 4.95452 5.04540 5.05498 5.09844 5.11494 5.18235 5.24101 5.25887 5.28430 5.29949 5.32096 5.42859 5.47000 5.48234 5.53926 5.68693 6.20693 6.27205 6.70190 7.34254 7.35920 8.08382 8.34731 9.28481 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008860 B = 0.004004 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.501841 B = 6990.526595 C = 8462.805159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.410 6.410 3 C 0.080 3.920 4 C -0.082 4.082 5 C 0.527 3.473 6 O -0.583 6.583 7 N -0.704 5.704 8 C 0.160 3.840 9 H 0.062 0.938 10 C -0.114 4.114 11 C -0.110 4.110 12 C -0.113 4.113 13 C -0.104 4.104 14 C -0.084 4.084 15 H 0.074 0.926 16 C 0.164 3.836 17 N -0.737 5.737 18 C -0.244 4.244 19 H 0.068 0.932 20 C -0.069 4.069 21 N -0.966 5.966 22 Si 0.970 3.030 23 H -0.270 1.270 24 H -0.293 1.293 25 H -0.290 1.290 26 C -0.101 4.101 27 C -0.131 4.131 28 C -0.116 4.116 29 C -0.101 4.101 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.411 0.589 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.002 0.998 45 H 0.018 0.982 46 H 0.376 0.624 47 H 0.252 0.748 48 H 0.055 0.945 49 H 0.101 0.899 50 H 0.082 0.918 51 H 0.035 0.965 52 H 0.089 0.911 53 H 0.054 0.946 54 H 0.099 0.901 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.726 21.939 2.094 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.330 6.330 3 C 0.003 3.997 4 C -0.085 4.085 5 C 0.314 3.686 6 O -0.464 6.464 7 N -0.355 5.355 8 C 0.054 3.946 9 H 0.080 0.920 10 C -0.152 4.152 11 C -0.148 4.148 12 C -0.150 4.150 13 C -0.143 4.143 14 C -0.103 4.103 15 H 0.092 0.908 16 C 0.037 3.963 17 N -0.380 5.380 18 C -0.376 4.376 19 H 0.086 0.914 20 C -0.262 4.262 21 N -0.616 5.616 22 Si 0.799 3.201 23 H -0.195 1.195 24 H -0.220 1.220 25 H -0.217 1.217 26 C -0.139 4.139 27 C -0.169 4.169 28 C -0.153 4.153 29 C -0.139 4.139 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.250 0.750 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.020 0.980 45 H 0.036 0.964 46 H 0.209 0.791 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.119 0.881 50 H 0.100 0.900 51 H 0.054 0.946 52 H 0.108 0.892 53 H 0.073 0.927 54 H 0.118 0.882 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.964 22.148 2.503 23.669 hybrid contribution 0.159 -1.173 -0.748 1.400 sum -7.805 20.975 1.755 22.448 Atomic orbital electron populations 1.22867 0.79184 1.03533 1.00968 1.87747 1.21567 1.28108 1.95574 1.22544 0.89690 0.85203 1.02237 1.21764 0.95700 0.97454 0.93613 1.20674 0.79401 0.81807 0.86720 1.90620 1.37638 1.69253 1.48857 1.46170 1.48909 1.14093 1.26366 1.20821 0.98317 0.89683 0.85731 0.91995 1.21779 0.99402 0.99817 0.94252 1.21473 1.01713 0.94383 0.97201 1.21529 0.99856 0.96306 0.97318 1.21431 0.99390 0.99305 0.94130 1.21402 0.99834 0.93771 0.95276 0.90782 1.20699 0.95776 0.85043 0.94762 1.42494 1.51752 1.06448 1.37345 1.19587 1.17654 0.93277 1.07093 0.91403 1.25480 1.01448 0.96872 1.02402 1.69809 1.41609 1.06393 1.43822 0.85132 0.77893 0.78112 0.78984 1.19474 1.21977 1.21691 1.22575 0.96226 0.99415 0.95686 1.22462 0.96301 0.96553 1.01560 1.22067 0.97587 0.96169 0.99499 1.22070 0.97328 0.93267 1.01230 0.92429 0.89403 0.93356 0.92582 0.89426 0.75045 0.92480 0.91059 0.92340 0.89829 0.90799 0.91457 0.93008 0.92791 0.97996 0.96382 0.79096 0.93948 0.92662 0.88055 0.89974 0.94555 0.89217 0.92729 0.88206 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -8.13 8.01 -148.98 -1.19 -9.33 16 3 C 0.08 1.35 4.70 71.98 0.34 1.69 16 4 C -0.08 -1.78 0.60 -51.85 -0.03 -1.81 16 5 C 0.53 15.49 6.27 87.66 0.55 16.04 16 6 O -0.58 -20.80 15.09 -3.04 -0.05 -20.84 16 7 N -0.70 -20.58 3.77 -442.52 -1.67 -22.25 16 8 C 0.16 4.86 1.90 44.99 0.09 4.95 16 9 H 0.06 2.18 7.58 -2.38 -0.02 2.16 16 10 C -0.11 -2.89 5.49 30.59 0.17 -2.72 16 11 C -0.11 -2.49 5.92 30.59 0.18 -2.30 16 12 C -0.11 -2.80 5.92 30.59 0.18 -2.62 16 13 C -0.10 -3.39 5.08 30.59 0.16 -3.24 16 14 C -0.08 -2.82 1.80 -10.79 -0.02 -2.84 16 15 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 16 C 0.16 6.99 5.57 86.38 0.48 7.47 16 17 N -0.74 -38.33 5.33 -343.44 -1.83 -40.16 16 18 C -0.24 -14.00 9.99 84.04 0.84 -13.16 16 19 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 20 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 21 N -0.97 -59.17 13.06 21.65 0.28 -58.89 16 22 Si 0.97 46.78 29.55 68.60 2.03 48.80 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 26 C -0.10 -2.21 5.60 32.01 0.18 -2.03 16 27 C -0.13 -2.95 6.62 31.80 0.21 -2.74 16 28 C -0.12 -2.18 6.80 31.32 0.21 -1.97 16 29 C -0.10 -1.92 5.75 31.32 0.18 -1.74 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.41 11.90 6.12 -92.71 -0.57 11.33 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 42 H 0.05 1.96 7.18 -2.39 -0.02 1.94 16 43 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.02 0.79 7.30 -2.39 -0.02 0.77 16 46 H 0.38 20.48 6.85 -92.71 -0.64 19.84 16 47 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 48 H 0.05 1.48 7.63 -2.39 -0.02 1.46 16 49 H 0.10 1.72 8.06 -2.39 -0.02 1.70 16 50 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 52 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 53 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 54 H 0.10 1.25 7.83 -2.39 -0.02 1.23 16 55 H 0.07 1.54 6.86 -2.39 -0.02 1.53 16 Total: -1.00 -69.66 418.78 2.65 -67.01 By element: Atomic # 1 Polarization: 44.92 SS G_CDS: -0.35 Total: 44.57 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 5.43 Total: -8.92 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -3.21 Total: -121.30 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.24 Total: -30.17 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -69.66 2.65 -67.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733073206.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.242 kcal (2) G-P(sol) polarization free energy of solvation -69.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds