Wall clock time and date at job start Tue Mar 31 2020 22:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00265 * 2 1 4 4 C 1.52991 * 109.47143 * 180.02562 * 3 2 1 5 5 C 1.50697 * 110.43830 * 300.69811 * 4 3 2 6 6 O 1.21283 * 120.00521 * 237.18737 * 5 4 3 7 7 N 1.34784 * 119.99774 * 57.45843 * 5 4 3 8 8 C 1.46499 * 119.99893 * 179.72962 * 7 5 4 9 9 H 1.09002 * 109.47048 * 324.99733 * 8 7 5 10 10 C 1.52995 * 109.47258 * 85.00288 * 8 7 5 11 11 C 1.52997 * 109.47473 * 59.99614 * 10 8 7 12 12 C 1.53004 * 109.47119 * 60.00103 * 11 10 8 13 13 C 1.53004 * 109.46900 * 300.00405 * 12 11 10 14 14 C 1.52992 * 109.47266 * 59.99768 * 13 12 11 15 15 H 1.08998 * 109.47295 * 60.00443 * 14 13 12 16 16 C 1.53007 * 109.46958 * 180.02562 * 14 13 12 17 17 N 1.46500 * 109.46888 * 294.99804 * 16 14 13 18 18 C 1.36941 * 119.99759 * 179.97438 * 17 16 14 19 19 H 1.07992 * 120.00036 * 0.02562 * 18 17 16 20 20 C 1.38809 * 119.99601 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00099 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 120.00383 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46901 * 90.00292 * 22 20 18 24 24 H 1.48500 * 109.47210 * 210.00400 * 22 20 18 25 25 H 1.48498 * 109.46727 * 330.00293 * 22 20 18 26 26 C 1.54894 * 110.60070 * 63.31983 * 4 3 2 27 27 C 1.54884 * 102.74941 * 156.67526 * 26 4 3 28 28 C 1.54268 * 104.19808 * 322.05908 * 27 26 4 29 29 C 1.53868 * 106.59798 * 23.60637 * 28 27 26 30 30 H 1.09006 * 109.46531 * 300.00054 * 1 2 3 31 31 H 1.08998 * 109.47036 * 59.99593 * 1 2 3 32 32 H 1.08992 * 109.47149 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47278 * 59.99944 * 3 2 1 34 34 H 1.09002 * 109.46532 * 300.00154 * 3 2 1 35 35 H 0.97005 * 119.99846 * 359.72750 * 7 5 4 36 36 H 1.09007 * 109.47281 * 179.97438 * 10 8 7 37 37 H 1.09003 * 109.47025 * 299.99449 * 10 8 7 38 38 H 1.08998 * 109.46926 * 300.00256 * 11 10 8 39 39 H 1.09000 * 109.47117 * 179.97438 * 11 10 8 40 40 H 1.08997 * 109.46784 * 180.02562 * 12 11 10 41 41 H 1.09007 * 109.47084 * 59.99642 * 12 11 10 42 42 H 1.09007 * 109.46629 * 299.99516 * 13 12 11 43 43 H 1.08999 * 109.46614 * 180.02562 * 13 12 11 44 44 H 1.08995 * 109.47227 * 55.00144 * 16 14 13 45 45 H 1.08996 * 109.46888 * 175.00374 * 16 14 13 46 46 H 0.96999 * 120.00176 * 0.02562 * 17 16 14 47 47 H 0.97001 * 120.00393 * 180.02562 * 21 20 18 48 48 H 1.08999 * 110.75316 * 274.98726 * 26 4 3 49 49 H 1.08993 * 110.75598 * 38.36057 * 26 4 3 50 50 H 1.08995 * 110.49047 * 203.37819 * 27 26 4 51 51 H 1.09001 * 110.60173 * 80.78687 * 27 26 4 52 52 H 1.09005 * 110.02572 * 264.32528 * 28 27 26 53 53 H 1.09000 * 110.03591 * 142.89861 * 28 27 26 54 54 H 1.08999 * 110.03744 * 240.71572 * 29 28 27 55 55 H 1.09002 * 110.03435 * 119.28791 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0036 0.4241 1.2133 6 8 4.7917 0.9337 1.9815 7 7 3.5506 -0.8245 1.4424 8 6 4.0102 -1.5660 2.6192 9 1 5.0514 -1.3155 2.8227 10 6 3.1497 -1.1900 3.8271 11 6 1.6883 -1.5415 3.5415 12 6 1.5674 -3.0436 3.2770 13 6 2.4279 -3.4197 2.0692 14 6 3.8893 -3.0681 2.3548 15 1 4.2313 -3.6199 3.2304 16 6 4.7497 -3.4436 1.1466 17 7 4.7291 -4.8972 0.9653 18 6 5.4323 -5.4692 -0.0611 19 1 6.0024 -4.8489 -0.7367 20 6 5.4123 -6.8465 -0.2332 21 7 6.0886 -7.3964 -1.2194 22 14 4.4267 -7.9197 0.9359 23 1 3.0467 -8.0838 0.4126 24 1 5.0743 -9.2512 1.0505 25 1 4.3759 -7.2772 2.2737 26 6 4.0268 0.4928 -1.2965 27 6 5.4893 0.9887 -1.4153 28 6 5.4301 2.4573 -0.9465 29 6 4.1878 2.5818 -0.0471 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 2.9202 -1.2320 0.8280 36 1 3.4914 -1.7420 4.7027 37 1 3.2359 -0.1198 4.0155 38 1 1.3464 -0.9897 2.6659 39 1 1.0754 -1.2740 4.4022 40 1 0.5263 -3.2939 3.0731 41 1 1.9094 -3.5954 4.1527 42 1 2.0859 -2.8679 1.1935 43 1 2.3414 -4.4897 1.8805 44 1 4.3530 -2.9604 0.2538 45 1 5.7747 -3.1129 1.3137 46 1 4.2167 -5.4544 1.5719 47 1 6.0743 -8.3588 -1.3399 48 1 3.9940 -0.5917 -1.1916 49 1 3.4380 0.8170 -2.1545 50 1 5.8286 0.9319 -2.4496 51 1 6.1452 0.4076 -0.7671 52 1 5.3363 3.1202 -1.8067 53 1 6.3277 2.7049 -0.3799 54 1 3.4911 3.3052 -0.4706 55 1 4.4825 2.8898 0.9561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733073207.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:10 Heat of formation + Delta-G solvation = -118.234784 kcal Electronic energy + Delta-G solvation = -32764.621698 eV Core-core repulsion = 28799.676967 eV Total energy + Delta-G solvation = -3964.944731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.85098 -40.12181 -38.61322 -37.62117 -36.59224 -34.60247 -33.86308 -32.02148 -31.61358 -30.61737 -29.56388 -27.53949 -27.07898 -25.26608 -24.42668 -24.09758 -22.98437 -22.09985 -21.46836 -20.57070 -19.92496 -19.62554 -18.13567 -17.20123 -17.06995 -16.79871 -16.64257 -16.34229 -16.29837 -15.95618 -15.69572 -15.46371 -15.27481 -14.96061 -14.75162 -14.60514 -14.31961 -14.13547 -14.03825 -13.80090 -13.31171 -13.10466 -13.03846 -12.94702 -12.73183 -12.59173 -12.44719 -12.36162 -12.20976 -12.13236 -12.03991 -11.96835 -11.92292 -11.85284 -11.68502 -11.40988 -11.32205 -11.17922 -11.05362 -10.89850 -10.72481 -10.47948 -9.86136 -9.30550 -8.03198 -5.37195 1.36831 1.41140 1.48474 1.71116 2.29914 2.47973 2.77679 3.27823 3.43877 3.52742 3.59098 3.75573 3.81932 3.85215 3.94318 4.02606 4.23048 4.24821 4.30080 4.33058 4.44290 4.46662 4.51637 4.54772 4.56141 4.57718 4.62247 4.64733 4.68927 4.73363 4.74899 4.80224 4.89953 4.94138 4.97901 5.00517 5.04857 5.07670 5.10574 5.16700 5.25325 5.26696 5.29026 5.30988 5.35442 5.44331 5.47164 5.55103 5.71258 5.73949 6.20167 6.21820 6.73934 7.06864 7.39700 7.81500 8.03585 9.18584 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011091 B = 0.004016 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.854365 B = 6970.645688 C = 8016.083577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.409 6.409 3 C 0.081 3.919 4 C -0.082 4.082 5 C 0.525 3.475 6 O -0.584 6.584 7 N -0.698 5.698 8 C 0.156 3.844 9 H 0.060 0.940 10 C -0.119 4.119 11 C -0.108 4.108 12 C -0.112 4.112 13 C -0.109 4.109 14 C -0.093 4.093 15 H 0.085 0.915 16 C 0.167 3.833 17 N -0.751 5.751 18 C -0.237 4.237 19 H 0.050 0.950 20 C -0.062 4.062 21 N -0.984 5.984 22 Si 0.956 3.044 23 H -0.273 1.273 24 H -0.296 1.296 25 H -0.251 1.251 26 C -0.101 4.101 27 C -0.132 4.132 28 C -0.116 4.116 29 C -0.101 4.101 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.413 0.587 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.023 0.977 45 H 0.005 0.995 46 H 0.368 0.632 47 H 0.258 0.742 48 H 0.053 0.947 49 H 0.101 0.899 50 H 0.080 0.920 51 H 0.034 0.966 52 H 0.089 0.911 53 H 0.053 0.947 54 H 0.100 0.900 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.971 21.954 5.731 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.328 6.328 3 C 0.004 3.996 4 C -0.085 4.085 5 C 0.312 3.688 6 O -0.465 6.465 7 N -0.351 5.351 8 C 0.051 3.949 9 H 0.079 0.921 10 C -0.158 4.158 11 C -0.146 4.146 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.112 4.112 15 H 0.104 0.896 16 C 0.041 3.959 17 N -0.398 5.398 18 C -0.368 4.368 19 H 0.068 0.932 20 C -0.253 4.253 21 N -0.635 5.635 22 Si 0.783 3.217 23 H -0.198 1.198 24 H -0.222 1.222 25 H -0.176 1.176 26 C -0.138 4.138 27 C -0.170 4.170 28 C -0.153 4.153 29 C -0.138 4.138 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.253 0.747 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.041 0.959 45 H 0.023 0.977 46 H 0.202 0.798 47 H 0.067 0.933 48 H 0.072 0.928 49 H 0.120 0.880 50 H 0.098 0.902 51 H 0.053 0.947 52 H 0.107 0.893 53 H 0.072 0.928 54 H 0.118 0.882 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.185 22.135 6.097 27.527 hybrid contribution -0.053 -1.202 0.034 1.204 sum -15.238 20.933 6.131 26.608 Atomic orbital electron populations 1.22881 0.79121 1.03633 1.00966 1.87720 1.21587 1.27990 1.95549 1.22526 0.89528 0.85269 1.02272 1.21755 0.95831 0.97360 0.93553 1.20672 0.79790 0.81904 0.86440 1.90623 1.36454 1.69439 1.50002 1.46181 1.46879 1.15004 1.27065 1.20792 0.98086 0.89765 0.86300 0.92140 1.21812 0.96250 1.00925 0.96782 1.21445 0.95137 0.95948 1.02039 1.21524 0.99866 0.96209 0.97328 1.21514 0.93103 1.00976 0.99088 1.21531 0.96728 0.94809 0.98152 0.89649 1.20671 0.96117 0.83126 0.96000 1.42643 1.59482 1.03289 1.34347 1.18995 1.21827 0.91140 1.04789 0.93242 1.25518 1.01730 0.97835 1.00236 1.69896 1.47987 1.10781 1.34810 0.85394 0.78567 0.77920 0.79839 1.19845 1.22243 1.17583 1.22501 0.96119 0.99379 0.95833 1.22404 0.96470 0.96664 1.01467 1.22064 0.97673 0.96079 0.99502 1.22061 0.97234 0.93394 1.01148 0.93221 0.92658 0.89164 0.92410 0.89552 0.74676 0.90417 0.92646 0.91716 0.90735 0.90535 0.91620 0.91846 0.92699 0.95937 0.97744 0.79830 0.93287 0.92778 0.88027 0.90161 0.94681 0.89276 0.92836 0.88187 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -7.16 7.91 -148.98 -1.18 -8.34 16 3 C 0.08 1.25 4.71 71.98 0.34 1.59 16 4 C -0.08 -1.71 0.62 -51.85 -0.03 -1.75 16 5 C 0.52 14.85 6.27 87.65 0.55 15.40 16 6 O -0.58 -20.44 15.10 -3.04 -0.05 -20.49 16 7 N -0.70 -18.88 3.14 -442.53 -1.39 -20.27 16 8 C 0.16 4.40 2.23 44.99 0.10 4.50 16 9 H 0.06 2.02 7.58 -2.39 -0.02 2.00 16 10 C -0.12 -2.73 5.60 30.59 0.17 -2.55 16 11 C -0.11 -2.03 5.77 30.59 0.18 -1.85 16 12 C -0.11 -2.21 5.92 30.60 0.18 -2.03 16 13 C -0.11 -2.87 4.90 30.59 0.15 -2.72 16 14 C -0.09 -2.81 2.02 -10.79 -0.02 -2.84 16 15 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 16 C 0.17 6.75 5.42 86.38 0.47 7.22 16 17 N -0.75 -36.01 5.13 -343.46 -1.76 -37.77 16 18 C -0.24 -13.93 10.47 84.03 0.88 -13.05 16 19 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 20 C -0.06 -3.70 5.50 84.86 0.47 -3.24 16 21 N -0.98 -64.09 13.97 21.65 0.30 -63.79 16 22 Si 0.96 45.63 27.74 68.60 1.90 47.53 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 25 H -0.25 -10.80 6.52 99.48 0.65 -10.15 16 26 C -0.10 -2.19 5.59 31.89 0.18 -2.01 16 27 C -0.13 -3.06 6.61 31.67 0.21 -2.86 16 28 C -0.12 -2.22 6.80 31.32 0.21 -2.01 16 29 C -0.10 -1.88 5.73 31.32 0.18 -1.70 16 30 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.41 10.82 4.39 -92.70 -0.41 10.41 16 36 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.25 7.60 -2.39 -0.02 1.23 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.06 1.66 6.51 -2.38 -0.02 1.65 16 43 H 0.05 1.62 7.18 -2.39 -0.02 1.61 16 44 H 0.02 0.94 7.61 -2.39 -0.02 0.92 16 45 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.37 16.51 4.71 -92.71 -0.44 16.08 16 47 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 48 H 0.05 1.44 7.81 -2.39 -0.02 1.42 16 49 H 0.10 1.71 8.06 -2.39 -0.02 1.69 16 50 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 53 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 54 H 0.10 1.22 7.83 -2.39 -0.02 1.20 16 55 H 0.07 1.51 6.89 -2.39 -0.02 1.50 16 Total: -1.00 -74.02 411.70 3.24 -70.78 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -0.05 Total: 40.62 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 5.46 Total: -8.28 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -2.85 Total: -121.82 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -1.22 Total: -28.82 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.90 Total: 47.53 kcal Total: -74.02 3.24 -70.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733073207.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.457 kcal (2) G-P(sol) polarization free energy of solvation -74.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds