Wall clock time and date at job start Tue Mar 31 2020 22:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99833 * 2 1 4 4 C 1.53009 * 109.46928 * 180.02562 * 3 2 1 5 5 C 1.50693 * 110.01302 * 301.39163 * 4 3 2 6 6 O 1.21282 * 119.99765 * 238.60639 * 5 4 3 7 7 N 1.34775 * 120.00583 * 58.61243 * 5 4 3 8 8 C 1.46493 * 120.00645 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.46812 * 34.99410 * 8 7 5 10 10 C 1.52998 * 109.47284 * 275.00201 * 8 7 5 11 11 C 1.52997 * 109.47485 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47325 * 59.99504 * 11 10 8 13 13 C 1.53006 * 109.47169 * 300.00416 * 12 11 10 14 14 C 1.52998 * 109.47007 * 59.99774 * 13 12 11 15 15 H 1.08997 * 109.47335 * 60.00046 * 14 13 12 16 16 C 1.53003 * 109.47143 * 180.02562 * 14 13 12 17 17 N 1.46505 * 109.46701 * 295.00014 * 16 14 13 18 18 C 1.36939 * 119.99879 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99663 * 359.97438 * 18 17 16 20 20 C 1.38809 * 119.99862 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99459 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00237 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47082 * 89.99974 * 22 20 18 24 24 H 1.48500 * 109.47161 * 210.00118 * 22 20 18 25 25 H 1.48502 * 109.47154 * 330.00164 * 22 20 18 26 26 C 1.53869 * 110.02997 * 179.97438 * 4 3 2 27 27 C 1.54266 * 106.60031 * 240.66603 * 26 4 3 28 28 C 1.54894 * 104.31305 * 336.32486 * 27 26 4 29 29 C 1.54266 * 110.07226 * 62.80904 * 4 3 2 30 30 H 1.09002 * 109.47072 * 299.99946 * 1 2 3 31 31 H 1.08994 * 109.47246 * 60.00077 * 1 2 3 32 32 H 1.09005 * 109.47292 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47353 * 60.00002 * 3 2 1 34 34 H 1.08998 * 109.47131 * 299.99902 * 3 2 1 35 35 H 0.97001 * 119.99628 * 359.97438 * 7 5 4 36 36 H 1.09009 * 109.46840 * 299.99431 * 10 8 7 37 37 H 1.08997 * 109.47656 * 59.99245 * 10 8 7 38 38 H 1.09005 * 109.46926 * 300.00078 * 11 10 8 39 39 H 1.09004 * 109.47573 * 179.97438 * 11 10 8 40 40 H 1.08997 * 109.47185 * 180.02562 * 12 11 10 41 41 H 1.09001 * 109.47318 * 60.00138 * 12 11 10 42 42 H 1.09001 * 109.46773 * 300.00055 * 13 12 11 43 43 H 1.08996 * 109.47150 * 179.97438 * 13 12 11 44 44 H 1.08997 * 109.46947 * 54.99834 * 16 14 13 45 45 H 1.08993 * 109.47112 * 175.00068 * 16 14 13 46 46 H 0.96991 * 120.00052 * 359.97438 * 17 16 14 47 47 H 0.97003 * 119.99594 * 180.02562 * 21 20 18 48 48 H 1.09001 * 110.02983 * 121.38355 * 26 4 3 49 49 H 1.08996 * 110.07773 * 359.97438 * 26 4 3 50 50 H 1.09002 * 110.48629 * 95.07240 * 27 26 4 51 51 H 1.08998 * 110.48744 * 217.58143 * 27 26 4 52 52 H 1.08996 * 110.75388 * 156.31523 * 28 27 26 53 53 H 1.08993 * 110.76071 * 279.69749 * 28 27 26 54 54 H 1.09005 * 110.48526 * 261.59780 * 29 4 3 55 55 H 1.09007 * 110.48724 * 24.10264 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9919 0.4084 1.2077 6 8 4.7563 0.9157 2.0010 7 7 3.5508 -0.8494 1.4069 8 6 3.9949 -1.6042 2.5812 9 1 4.1132 -0.9254 3.4259 10 6 5.3342 -2.2785 2.2776 11 6 5.7984 -3.0663 3.5043 12 6 4.7570 -4.1328 3.8496 13 6 3.4176 -3.4584 4.1533 14 6 2.9535 -2.6706 2.9265 15 1 2.8352 -3.3496 2.0821 16 6 1.6145 -1.9957 3.2304 17 7 0.5889 -3.0198 3.4442 18 6 -0.6979 -2.6505 3.7323 19 1 -0.9566 -1.6042 3.8023 20 6 -1.6697 -3.6209 3.9344 21 7 -2.9064 -3.2658 4.2118 22 14 -1.2224 -5.4304 3.8127 23 1 -0.8022 -5.9273 5.1475 24 1 -2.4025 -6.2017 3.3463 25 1 -0.1067 -5.6007 2.8475 26 6 4.1751 2.5841 -0.0013 27 6 5.0164 2.6836 -1.2905 28 6 5.3306 1.2119 -1.6573 29 6 4.0105 0.4830 -1.2898 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 2.9392 -1.2550 0.7725 36 1 5.2159 -2.9574 1.4329 37 1 6.0762 -1.5188 2.0320 38 1 5.9167 -2.3873 4.3487 39 1 6.7524 -3.5472 3.2878 40 1 5.0875 -4.6937 4.7238 41 1 4.6386 -4.8119 3.0052 42 1 3.5361 -2.7793 4.9977 43 1 2.6757 -4.2181 4.3988 44 1 1.7109 -1.3850 4.1281 45 1 1.3272 -1.3637 2.3902 46 1 0.8212 -3.9594 3.3810 47 1 -3.5855 -3.9439 4.3533 48 1 4.8157 2.7022 0.8726 49 1 3.3995 3.3499 -0.0016 50 1 4.4422 3.1605 -2.0849 51 1 5.9377 3.2351 -1.1032 52 1 5.5440 1.1162 -2.7218 53 1 6.1603 0.8336 -1.0602 54 1 4.1988 -0.5741 -1.1016 55 1 3.2728 0.6027 -2.0833 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733073209.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:19 Heat of formation + Delta-G solvation = -120.477208 kcal Electronic energy + Delta-G solvation = -32408.429027 eV Core-core repulsion = 28443.387058 eV Total energy + Delta-G solvation = -3965.041969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77768 -40.06432 -38.68243 -37.65924 -36.55578 -35.13718 -33.82844 -32.01128 -31.60846 -30.33151 -29.47810 -27.62035 -27.05958 -25.37283 -24.45363 -24.02303 -22.36958 -22.08853 -21.47093 -21.12774 -20.09419 -19.58235 -18.15448 -17.41553 -17.19354 -16.73716 -16.62269 -16.47898 -16.15498 -15.88893 -15.54700 -15.36950 -15.25813 -14.93823 -14.72782 -14.62507 -14.37028 -14.16474 -14.09345 -13.71431 -13.66606 -13.27114 -13.03597 -12.78839 -12.67739 -12.59439 -12.37748 -12.19612 -12.13413 -12.03253 -11.99199 -11.94980 -11.89875 -11.83378 -11.71426 -11.52432 -11.42899 -11.29769 -11.15666 -10.96963 -10.75119 -10.48529 -9.89647 -9.27298 -8.01397 -5.34316 1.37883 1.41353 1.48731 1.66324 2.24940 2.49164 2.69842 3.30240 3.43360 3.52623 3.59318 3.73102 3.81590 3.86825 3.99847 4.06177 4.22727 4.25934 4.28867 4.30073 4.41703 4.45660 4.47169 4.49278 4.53000 4.53522 4.56005 4.56824 4.61220 4.77614 4.81761 4.83876 4.87237 4.96906 4.97502 5.05188 5.07380 5.11350 5.15878 5.20758 5.24325 5.27007 5.27227 5.29623 5.30678 5.38807 5.48504 5.53064 5.68024 5.76005 6.12837 6.21887 6.68519 7.08947 7.34266 7.84248 8.06168 9.20319 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011363 B = 0.004055 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.477768 B = 6903.401564 C = 8714.007980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.400 6.400 3 C 0.074 3.926 4 C -0.078 4.078 5 C 0.524 3.476 6 O -0.584 6.584 7 N -0.704 5.704 8 C 0.158 3.842 9 H 0.061 0.939 10 C -0.116 4.116 11 C -0.111 4.111 12 C -0.114 4.114 13 C -0.110 4.110 14 C -0.089 4.089 15 H 0.082 0.918 16 C 0.165 3.835 17 N -0.751 5.751 18 C -0.229 4.229 19 H 0.050 0.950 20 C -0.061 4.061 21 N -0.984 5.984 22 Si 0.952 3.048 23 H -0.280 1.280 24 H -0.296 1.296 25 H -0.248 1.248 26 C -0.114 4.114 27 C -0.115 4.115 28 C -0.124 4.124 29 C -0.101 4.101 30 H 0.027 0.973 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.088 0.912 35 H 0.413 0.587 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.002 0.998 45 H 0.032 0.968 46 H 0.366 0.634 47 H 0.257 0.743 48 H 0.068 0.932 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.070 0.930 52 H 0.089 0.911 53 H 0.053 0.947 54 H 0.064 0.936 55 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.323 6.115 -14.416 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.319 6.319 3 C -0.003 4.003 4 C -0.081 4.081 5 C 0.311 3.689 6 O -0.464 6.464 7 N -0.355 5.355 8 C 0.053 3.947 9 H 0.079 0.921 10 C -0.155 4.155 11 C -0.149 4.149 12 C -0.151 4.151 13 C -0.148 4.148 14 C -0.108 4.108 15 H 0.101 0.899 16 C 0.039 3.961 17 N -0.397 5.397 18 C -0.360 4.360 19 H 0.068 0.932 20 C -0.252 4.252 21 N -0.635 5.635 22 Si 0.779 3.221 23 H -0.206 1.206 24 H -0.222 1.222 25 H -0.173 1.173 26 C -0.152 4.152 27 C -0.153 4.153 28 C -0.161 4.161 29 C -0.139 4.139 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.252 0.748 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.021 0.979 45 H 0.050 0.950 46 H 0.200 0.800 47 H 0.066 0.934 48 H 0.087 0.913 49 H 0.099 0.901 50 H 0.104 0.896 51 H 0.089 0.911 52 H 0.108 0.892 53 H 0.072 0.928 54 H 0.083 0.917 55 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 19.791 6.446 -13.821 24.985 hybrid contribution -1.215 -0.769 0.455 1.508 sum 18.575 5.677 -13.366 23.578 Atomic orbital electron populations 1.22704 0.79597 1.03090 1.00243 1.87661 1.20764 1.27981 1.95479 1.22676 0.90755 0.85246 1.01588 1.21543 0.94681 0.97409 0.94445 1.20745 0.79506 0.81694 0.86933 1.90612 1.37841 1.69950 1.48042 1.46172 1.48299 1.14430 1.26622 1.20836 0.93792 0.92029 0.88077 0.92125 1.21810 0.95180 0.99131 0.99353 1.21475 0.98960 0.97374 0.97078 1.21553 0.93528 0.97755 1.02290 1.21520 0.97769 0.99037 0.96502 1.21485 0.93031 0.96769 0.99555 0.89931 1.20712 0.87464 0.90901 0.97061 1.42638 1.05890 1.04417 1.86714 1.18953 0.85641 0.92976 1.38400 0.93158 1.25450 0.95139 1.02336 1.02288 1.69890 1.02543 1.33972 1.57097 0.85450 0.77588 0.80476 0.78553 1.20629 1.22234 1.17288 1.22182 0.99837 0.92918 1.00253 1.22332 0.99779 0.96864 0.96300 1.22577 0.96354 0.95210 1.01980 1.22452 0.98151 0.98950 0.94312 0.95456 0.91575 0.90169 0.94285 0.89376 0.74837 0.90687 0.92552 0.92497 0.89879 0.90641 0.91032 0.92577 0.92420 0.97945 0.95010 0.79975 0.93397 0.91343 0.90085 0.89645 0.91099 0.89232 0.92848 0.91683 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.01 11.01 113.37 1.25 2.25 16 2 O -0.40 -9.96 7.86 -148.98 -1.17 -11.13 16 3 C 0.07 1.58 4.44 71.99 0.32 1.90 16 4 C -0.08 -1.67 0.66 -52.20 -0.03 -1.71 16 5 C 0.52 15.03 6.39 87.66 0.56 15.59 16 6 O -0.58 -20.56 14.87 -3.04 -0.05 -20.60 16 7 N -0.70 -19.36 3.65 -442.56 -1.62 -20.98 16 8 C 0.16 4.45 1.90 44.99 0.09 4.54 16 9 H 0.06 2.03 7.58 -2.39 -0.02 2.01 16 10 C -0.12 -2.67 5.49 30.59 0.17 -2.50 16 11 C -0.11 -2.24 5.92 30.59 0.18 -2.06 16 12 C -0.11 -2.40 5.92 30.60 0.18 -2.22 16 13 C -0.11 -3.10 5.08 30.60 0.16 -2.94 16 14 C -0.09 -2.69 1.80 -10.79 -0.02 -2.71 16 15 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 16 C 0.16 6.54 5.56 86.38 0.48 7.02 16 17 N -0.75 -35.09 5.13 -343.44 -1.76 -36.85 16 18 C -0.23 -13.10 10.47 84.03 0.88 -12.22 16 19 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 20 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 21 N -0.98 -62.97 13.97 21.65 0.30 -62.67 16 22 Si 0.95 45.03 27.74 68.60 1.90 46.93 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 25 H -0.25 -10.46 6.52 99.48 0.65 -9.82 16 26 C -0.11 -2.23 6.05 31.32 0.19 -2.04 16 27 C -0.12 -1.65 6.82 31.67 0.22 -1.44 16 28 C -0.12 -1.84 6.94 32.00 0.22 -1.62 16 29 C -0.10 -1.72 5.64 31.78 0.18 -1.54 16 30 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 35 H 0.41 11.02 6.16 -92.71 -0.57 10.45 16 36 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.78 7.18 -2.39 -0.02 1.76 16 44 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 45 H 0.03 1.30 7.30 -2.39 -0.02 1.28 16 46 H 0.37 16.18 4.71 -92.72 -0.44 15.74 16 47 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 48 H 0.07 1.73 6.39 -2.39 -0.02 1.71 16 49 H 0.08 1.35 7.67 -2.39 -0.02 1.33 16 50 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 54 H 0.06 1.20 7.50 -2.38 -0.02 1.19 16 55 H 0.09 1.33 7.84 -2.38 -0.02 1.31 16 Total: -1.00 -71.04 414.81 2.88 -68.16 By element: Atomic # 1 Polarization: 42.15 SS G_CDS: -0.21 Total: 41.93 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 5.48 Total: -4.79 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -3.08 Total: -120.50 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.22 Total: -31.73 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.90 Total: 46.93 kcal Total: -71.04 2.88 -68.16 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733073209.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.320 kcal (2) G-P(sol) polarization free energy of solvation -71.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds