Wall clock time and date at job start Tue Mar 31 2020 21:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.47196 * 2 1 4 4 C 1.42904 * 113.99675 * 184.64712 * 3 2 1 5 5 H 1.09001 * 109.47116 * 327.32354 * 4 3 2 6 6 C 1.53001 * 109.46821 * 207.32333 * 4 3 2 7 7 C 1.50701 * 109.46834 * 65.00404 * 6 4 3 8 8 O 1.21273 * 120.00610 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99646 * 180.02562 * 7 6 4 10 10 C 1.46810 * 119.61472 * 359.97438 * 9 7 6 11 11 C 1.53457 * 107.65473 * 232.20484 * 10 9 7 12 12 C 1.51388 * 108.73538 * 302.41074 * 11 10 9 13 13 C 1.52947 * 111.48789 * 63.01877 * 12 11 10 14 14 H 1.09007 * 112.27018 * 71.24659 * 13 12 11 15 15 C 1.55529 * 107.62310 * 195.68558 * 13 12 11 16 16 N 1.47527 * 104.67887 * 78.07340 * 15 13 12 17 17 C 1.36939 * 125.70200 * 204.54438 * 16 15 13 18 18 H 1.08002 * 120.00116 * 354.64062 * 17 16 15 19 19 C 1.38810 * 120.00041 * 174.63734 * 17 16 15 20 20 N 1.31618 * 119.99872 * 8.45246 * 19 17 16 21 21 Si 1.86799 * 120.00042 * 188.45159 * 19 17 16 22 22 H 1.48504 * 109.47187 * 94.97147 * 21 19 17 23 23 H 1.48491 * 109.47254 * 214.96768 * 21 19 17 24 24 H 1.48496 * 109.47280 * 334.97290 * 21 19 17 25 25 C 1.47279 * 108.59914 * 24.54987 * 16 15 13 26 26 C 1.45170 * 119.61828 * 180.02562 * 9 7 6 27 27 H 1.09001 * 109.56843 * 12.29593 * 26 9 7 28 28 C 1.52994 * 109.47018 * 87.32507 * 4 3 2 29 29 C 1.53010 * 109.47229 * 63.94182 * 28 4 3 30 30 C 1.52995 * 109.47472 * 183.94230 * 28 4 3 31 31 H 1.08997 * 109.47246 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46872 * 299.99819 * 1 2 3 33 33 H 1.08996 * 109.47216 * 59.99581 * 1 2 3 34 34 H 1.09006 * 109.46872 * 240.00181 * 2 1 3 35 35 H 1.08996 * 109.47216 * 120.00419 * 2 1 3 36 36 H 1.09001 * 109.47118 * 305.00417 * 6 4 3 37 37 H 1.08994 * 109.46818 * 185.00228 * 6 4 3 38 38 H 1.08994 * 109.82351 * 351.74195 * 10 9 7 39 39 H 1.09002 * 109.82324 * 112.67148 * 10 9 7 40 40 H 1.08992 * 109.63212 * 61.76752 * 11 10 9 41 41 H 1.08999 * 109.62987 * 182.16182 * 11 10 9 42 42 H 1.09003 * 108.84072 * 302.48777 * 12 11 10 43 43 H 1.08996 * 108.86836 * 183.57623 * 12 11 10 44 44 H 1.09001 * 110.39513 * 196.86963 * 15 13 12 45 45 H 1.08992 * 110.39641 * 319.27048 * 15 13 12 46 46 H 0.97003 * 119.99493 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.99111 * 239.60021 * 25 16 15 48 48 H 1.08999 * 110.02885 * 118.29631 * 25 16 15 49 49 H 1.09002 * 109.47338 * 303.94604 * 28 4 3 50 50 H 1.08992 * 109.46777 * 59.99875 * 29 28 4 51 51 H 1.09002 * 109.47059 * 180.02562 * 29 28 4 52 52 H 1.09007 * 109.46696 * 300.00088 * 29 28 4 53 53 H 1.08999 * 109.47063 * 57.37302 * 30 28 4 54 54 H 1.08999 * 109.47512 * 177.37925 * 30 28 4 55 55 H 1.09009 * 109.46779 * 297.37743 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4269 1.4615 -0.1058 5 1 3.8976 0.6136 0.3918 6 6 3.8849 2.7613 0.5587 7 6 3.5990 2.6976 2.0370 8 8 3.0797 1.7101 2.5122 9 7 3.9196 3.7386 2.8307 10 6 4.5474 4.9301 2.2464 11 6 5.8177 5.2300 3.0535 12 6 5.4369 5.4225 4.5060 13 6 4.8380 4.1475 5.1019 14 1 5.5858 3.3673 5.2445 15 6 4.1219 4.5379 6.4262 16 7 2.8447 5.1389 5.9974 17 6 2.1013 6.0349 6.7184 18 1 2.3942 6.2930 7.7254 19 6 0.9714 6.6116 6.1549 20 7 0.5189 6.1781 4.9975 21 14 0.0931 8.0030 7.0392 22 1 0.5830 9.3058 6.5217 23 1 -1.3689 7.8948 6.8029 24 1 0.3670 7.9146 8.4960 25 6 2.5026 4.6141 4.6645 26 6 3.6411 3.6682 4.2537 27 1 3.3847 2.6442 4.5253 28 6 3.8290 1.4740 -1.5819 29 6 3.2486 2.7179 -2.2580 30 6 5.3546 1.4972 -1.6948 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 3.3474 3.6023 0.1206 37 1 4.9553 2.8924 0.4009 38 1 4.8076 4.7380 1.2056 39 1 3.8628 5.7761 2.3071 40 1 6.5098 4.3919 2.9719 41 1 6.2905 6.1340 2.6698 42 1 4.7059 6.2281 4.5744 43 1 6.3276 5.6982 5.0704 44 1 3.9396 3.6522 7.0348 45 1 4.7167 5.2643 6.9797 46 1 -0.2705 6.5814 4.6036 47 1 2.4233 5.4338 3.9504 48 1 1.5611 4.0667 4.7092 49 1 3.4419 0.5804 -2.0716 50 1 3.6357 3.6115 -1.7684 51 1 3.5348 2.7266 -3.3098 52 1 2.1617 2.7014 -2.1776 53 1 5.7706 0.6354 -1.1729 54 1 5.6418 1.4591 -2.7456 55 1 5.7382 2.4136 -1.2462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733606751.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:30 Heat of formation + Delta-G solvation = -87.024673 kcal Electronic energy + Delta-G solvation = -32201.282511 eV Core-core repulsion = 28237.691152 eV Total energy + Delta-G solvation = -3963.591359 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.73251 -40.15448 -38.87162 -36.79169 -36.22965 -34.49596 -33.50846 -32.30996 -31.46545 -30.53010 -28.88254 -27.96531 -27.19900 -25.87852 -25.02356 -23.72911 -23.20155 -22.27141 -21.38131 -20.22867 -19.37461 -18.91352 -18.34568 -17.78575 -17.23957 -16.79956 -16.45518 -16.05744 -16.03002 -15.90226 -15.28953 -14.93271 -14.85917 -14.78919 -14.54845 -14.41061 -14.03332 -13.88295 -13.69850 -13.60135 -13.49931 -13.17190 -13.10367 -12.97714 -12.95081 -12.74510 -12.64491 -12.43715 -12.38761 -12.12747 -12.06553 -12.05122 -11.84915 -11.79984 -11.70289 -11.63979 -11.49655 -11.32907 -11.14120 -10.73774 -10.64174 -10.27276 -9.48985 -8.92688 -7.87028 -5.22988 1.43458 1.45517 1.54788 1.70549 2.06956 2.48462 2.81531 3.31193 3.45173 3.66229 3.75643 3.76822 3.94153 4.00597 4.05052 4.09963 4.13386 4.18215 4.22089 4.30003 4.35911 4.44087 4.45001 4.49885 4.55497 4.56010 4.62093 4.70384 4.80468 4.87410 4.90383 4.90901 4.93749 4.95557 4.98400 5.05186 5.10782 5.12911 5.13428 5.21225 5.23241 5.27977 5.30314 5.42069 5.43908 5.50577 5.51634 5.59965 5.63453 5.82336 6.14190 6.41309 6.55449 7.04772 7.28664 7.73591 8.39718 9.23208 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.003437 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.036016 B = 8143.593792 C = 9166.750221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 O -0.396 6.396 4 C 0.108 3.892 5 H 0.054 0.946 6 C -0.130 4.130 7 C 0.504 3.496 8 O -0.583 6.583 9 N -0.593 5.593 10 C 0.100 3.900 11 C -0.119 4.119 12 C -0.106 4.106 13 C -0.092 4.092 14 H 0.106 0.894 15 C 0.131 3.869 16 N -0.621 5.621 17 C -0.242 4.242 18 H 0.086 0.914 19 C -0.064 4.064 20 N -0.951 5.951 21 Si 0.978 3.022 22 H -0.283 1.283 23 H -0.299 1.299 24 H -0.266 1.266 25 C 0.199 3.801 26 C 0.130 3.870 27 H 0.063 0.937 28 C -0.110 4.110 29 C -0.144 4.144 30 C -0.147 4.147 31 H 0.090 0.910 32 H 0.036 0.964 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.031 0.969 36 H 0.109 0.891 37 H 0.143 0.857 38 H 0.122 0.878 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.039 0.961 43 H 0.081 0.919 44 H 0.016 0.984 45 H 0.058 0.942 46 H 0.245 0.755 47 H 0.022 0.978 48 H -0.020 1.020 49 H 0.072 0.928 50 H 0.063 0.937 51 H 0.067 0.933 52 H 0.042 0.958 53 H 0.056 0.944 54 H 0.071 0.929 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.624 -7.764 -16.491 23.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 O -0.316 6.316 4 C 0.050 3.950 5 H 0.072 0.928 6 C -0.169 4.169 7 C 0.294 3.706 8 O -0.463 6.463 9 N -0.324 5.324 10 C -0.022 4.022 11 C -0.157 4.157 12 C -0.144 4.144 13 C -0.111 4.111 14 H 0.124 0.876 15 C 0.005 3.995 16 N -0.348 5.348 17 C -0.371 4.371 18 H 0.104 0.896 19 C -0.257 4.257 20 N -0.599 5.599 21 Si 0.806 3.194 22 H -0.210 1.210 23 H -0.226 1.226 24 H -0.190 1.190 25 C 0.072 3.928 26 C 0.024 3.976 27 H 0.082 0.918 28 C -0.129 4.129 29 C -0.201 4.201 30 C -0.204 4.204 31 H 0.108 0.892 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.127 0.873 37 H 0.160 0.840 38 H 0.140 0.860 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.120 0.880 42 H 0.058 0.942 43 H 0.099 0.901 44 H 0.034 0.966 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.041 0.959 48 H -0.002 1.002 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.086 0.914 52 H 0.061 0.939 53 H 0.075 0.925 54 H 0.090 0.910 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.058 -7.987 -16.227 22.907 hybrid contribution -1.496 0.407 0.964 1.826 sum 12.562 -7.581 -15.263 21.171 Atomic orbital electron populations 1.21729 0.93741 1.03007 1.01967 1.22452 0.95695 0.83640 0.99691 1.87907 1.21934 1.27127 1.94639 1.21933 0.81458 0.96397 0.95216 0.92829 1.22029 1.05361 1.00604 0.88909 1.21414 0.76997 0.81880 0.90288 1.90637 1.44540 1.34004 1.77112 1.47592 1.60430 1.17538 1.06860 1.22104 0.94544 0.86370 0.99169 1.21611 0.96306 1.03789 0.94004 1.21106 1.00298 0.95808 0.97149 1.22549 0.95522 0.98735 0.94343 0.87602 1.21969 0.86584 0.95696 0.95223 1.44728 1.22317 1.50312 1.17399 1.19481 1.05533 1.15086 0.96983 0.89611 1.25684 0.99465 1.02409 0.98186 1.70256 1.25230 1.44076 1.20388 0.85065 0.76831 0.79228 0.78269 1.20984 1.22597 1.19048 1.20810 0.91979 0.93154 0.86820 1.21340 0.96049 0.98884 0.81355 0.91829 1.21567 0.97637 0.99891 0.93831 1.21811 1.00497 0.97197 1.00638 1.21884 0.92855 1.02693 1.02964 0.89161 0.94468 0.91546 0.91710 0.95048 0.87276 0.83953 0.85960 0.93417 0.89774 0.88045 0.94244 0.90077 0.96605 0.92337 0.94615 0.95949 1.00155 0.90937 0.91759 0.91450 0.93922 0.92538 0.91048 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 10.28 71.98 0.74 -2.84 16 2 C 0.06 1.61 6.44 71.98 0.46 2.07 16 3 O -0.40 -12.02 8.72 -135.19 -1.18 -13.20 16 4 C 0.11 2.56 1.43 30.59 0.04 2.60 16 5 H 0.05 1.37 7.67 -2.39 -0.02 1.36 16 6 C -0.13 -2.99 2.95 29.85 0.09 -2.90 16 7 C 0.50 17.40 7.54 87.66 0.66 18.06 16 8 O -0.58 -25.40 14.74 10.78 0.16 -25.24 16 9 N -0.59 -20.41 2.72 -795.59 -2.16 -22.58 16 10 C 0.10 2.57 6.08 86.47 0.53 3.10 16 11 C -0.12 -2.56 6.06 30.22 0.18 -2.38 16 12 C -0.11 -3.12 4.77 30.05 0.14 -2.98 16 13 C -0.09 -3.15 3.69 -9.49 -0.04 -3.19 16 14 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 15 C 0.13 5.47 6.54 87.05 0.57 6.04 16 16 N -0.62 -33.21 3.03 -691.24 -2.10 -35.30 16 17 C -0.24 -13.97 10.27 84.03 0.86 -13.10 16 18 H 0.09 4.69 7.84 -2.91 -0.02 4.67 16 19 C -0.06 -3.79 5.47 84.86 0.46 -3.33 16 20 N -0.95 -60.11 10.40 21.65 0.23 -59.89 16 21 Si 0.98 47.03 29.56 68.60 2.03 49.06 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 C 0.20 10.68 4.60 86.44 0.40 11.07 16 26 C 0.13 5.44 2.93 45.90 0.13 5.58 16 27 H 0.06 2.99 6.94 -2.39 -0.02 2.98 16 28 C -0.11 -1.80 2.86 -10.79 -0.03 -1.83 16 29 C -0.14 -2.31 8.63 71.99 0.62 -1.69 16 30 C -0.15 -1.66 8.87 71.98 0.64 -1.02 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.31 7.52 -2.38 -0.02 1.30 16 35 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.11 2.43 6.45 -2.39 -0.02 2.41 16 37 H 0.14 2.09 5.83 -2.39 -0.01 2.07 16 38 H 0.12 2.05 5.82 -2.39 -0.01 2.04 16 39 H 0.05 1.51 7.54 -2.39 -0.02 1.49 16 40 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 42 H 0.04 1.50 7.34 -2.39 -0.02 1.48 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.06 2.27 8.00 -2.39 -0.02 2.25 16 46 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.02 1.31 6.46 -2.39 -0.02 1.29 16 48 H -0.02 -1.28 7.60 -2.39 -0.02 -1.30 16 49 H 0.07 1.18 7.54 -2.39 -0.02 1.16 16 50 H 0.06 0.93 6.47 -2.39 -0.02 0.92 16 51 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.04 0.86 7.79 -2.38 -0.02 0.84 16 53 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 54 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 55 H 0.07 0.65 6.56 -2.38 -0.02 0.63 16 Total: -1.00 -80.02 409.28 4.29 -75.74 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.84 Total: 18.15 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 6.47 Total: 13.26 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -4.03 Total: -117.77 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -1.02 Total: -38.44 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -80.02 4.29 -75.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733606751.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.288 kcal (2) G-P(sol) polarization free energy of solvation -80.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds