Wall clock time and date at job start Tue Mar 31 2020 22:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00302 * 2 1 4 4 H 1.09002 * 109.47002 * 330.00022 * 3 2 1 5 5 C 1.53005 * 109.47304 * 89.99831 * 3 2 1 6 6 C 1.52997 * 109.47452 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46817 * 300.00239 * 6 5 3 8 8 C 1.53000 * 109.47233 * 60.00194 * 7 6 5 9 9 H 1.09002 * 109.47398 * 59.99826 * 8 7 6 10 10 C 1.50699 * 109.47083 * 179.97438 * 8 7 6 11 11 O 1.21277 * 119.99833 * 119.99582 * 10 8 7 12 12 N 1.34773 * 120.00068 * 299.99925 * 10 8 7 13 13 C 1.46500 * 119.99996 * 179.97438 * 12 10 8 14 14 H 1.09006 * 109.47281 * 35.00200 * 13 12 10 15 15 C 1.53000 * 109.47096 * 154.99822 * 13 12 10 16 16 C 1.53002 * 109.47199 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.47208 * 300.00134 * 16 15 13 18 18 H 1.08993 * 109.46797 * 299.99761 * 17 16 15 19 19 C 1.53002 * 109.47053 * 179.97438 * 17 16 15 20 20 N 1.46498 * 109.47087 * 174.99744 * 19 17 16 21 21 C 1.36932 * 120.00140 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00171 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00043 * 180.02562 * 21 20 19 24 24 N 1.31617 * 119.99943 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99738 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47203 * 90.00458 * 25 23 21 27 27 H 1.48505 * 109.46738 * 210.00148 * 25 23 21 28 28 H 1.48496 * 109.47431 * 330.00001 * 25 23 21 29 29 C 1.53000 * 109.47150 * 59.99836 * 17 16 15 30 30 C 1.52998 * 109.47169 * 274.99870 * 13 12 10 31 31 C 1.52997 * 109.47060 * 299.99657 * 8 7 6 32 32 H 1.09001 * 109.47118 * 59.99418 * 1 2 3 33 33 H 1.09002 * 109.47143 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46765 * 300.00205 * 1 2 3 35 35 H 1.09002 * 109.46935 * 60.00150 * 5 3 2 36 36 H 1.09001 * 109.46812 * 300.00492 * 5 3 2 37 37 H 1.08993 * 109.47194 * 179.97438 * 6 5 3 38 38 H 1.09002 * 109.46695 * 59.99734 * 6 5 3 39 39 H 1.08992 * 109.47063 * 299.99823 * 7 6 5 40 40 H 1.09004 * 109.46733 * 179.97438 * 7 6 5 41 41 H 0.96998 * 119.99906 * 359.97438 * 12 10 8 42 42 H 1.09002 * 109.47125 * 300.00100 * 15 13 12 43 43 H 1.09002 * 109.47133 * 60.00376 * 15 13 12 44 44 H 1.09002 * 109.46682 * 60.00210 * 16 15 13 45 45 H 1.09005 * 109.47131 * 179.97438 * 16 15 13 46 46 H 1.08998 * 109.47426 * 295.00377 * 19 17 16 47 47 H 1.09001 * 109.46529 * 55.00016 * 19 17 16 48 48 H 0.97003 * 119.99645 * 0.02562 * 20 19 17 49 49 H 0.96999 * 119.99762 * 179.97438 * 24 23 21 50 50 H 1.09002 * 109.47133 * 59.99684 * 29 17 16 51 51 H 1.09002 * 109.47125 * 179.97438 * 29 17 16 52 52 H 1.09002 * 109.47361 * 299.99809 * 30 13 12 53 53 H 1.08994 * 109.47080 * 60.00246 * 30 13 12 54 54 H 1.08996 * 109.47853 * 180.02562 * 31 8 7 55 55 H 1.09002 * 109.47153 * 300.00319 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9994 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 2.8395 3.1693 1.4426 7 6 4.1881 3.1276 0.7211 8 6 3.9807 2.6618 -0.7214 9 1 3.3151 3.3555 -1.2351 10 6 5.3089 2.6213 -1.4322 11 8 5.7183 1.5770 -1.8933 12 7 6.0418 3.7456 -1.5553 13 6 7.3333 3.7061 -2.2458 14 1 7.2842 2.9919 -3.0678 15 6 7.6599 5.0957 -2.7964 16 6 9.0090 5.0547 -3.5170 17 6 10.0998 4.6265 -2.5332 18 1 10.1485 5.3408 -1.7114 19 6 11.4488 4.5849 -3.2540 20 7 12.5100 4.2918 -2.2875 21 6 13.8112 4.2039 -2.7049 22 1 14.0552 4.3511 -3.7467 23 6 14.8166 3.9256 -1.7892 24 7 14.5192 3.7458 -0.5198 25 14 16.5917 3.8065 -2.3587 26 1 17.2290 5.1453 -2.2763 27 1 17.3276 2.8537 -1.4892 28 1 16.6299 3.3257 -3.7632 29 6 9.7732 3.2369 -1.9826 30 6 8.4244 3.2777 -1.2625 31 6 3.3589 1.2638 -0.7215 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 2.8830 1.0775 1.9564 36 1 1.2569 1.8014 1.9563 37 1 2.9869 3.5014 2.4702 38 1 2.1739 3.8630 0.9288 39 1 4.8536 2.4340 1.2348 40 1 4.6309 4.1237 0.7207 41 1 5.7142 4.5809 -1.1868 42 1 6.8826 5.4009 -3.4969 43 1 7.7091 5.8099 -1.9744 44 1 8.9603 4.3404 -4.3389 45 1 9.2415 6.0446 -3.9096 46 1 11.4286 3.8080 -4.0182 47 1 11.6404 5.5503 -3.7223 48 1 12.2908 4.1592 -1.3519 49 1 15.2218 3.5510 0.1200 50 1 9.7244 2.5226 -2.8046 51 1 10.5506 2.9317 -1.2821 52 1 8.4736 3.9919 -0.4405 53 1 8.1917 2.2878 -0.8703 54 1 3.2114 0.9317 -1.7490 55 1 4.0244 0.5701 -0.2077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733689173.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:56 Heat of formation + Delta-G solvation = -137.489793 kcal Electronic energy + Delta-G solvation = -29899.618262 eV Core-core repulsion = 25933.838572 eV Total energy + Delta-G solvation = -3965.779690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.48560 -40.09657 -39.23401 -37.19938 -36.68887 -35.13370 -33.17853 -32.07973 -31.70955 -31.17880 -30.18205 -27.32526 -26.86671 -25.04865 -24.18314 -23.50560 -23.30353 -21.95249 -21.49122 -20.95543 -20.54564 -19.16471 -18.39957 -17.41318 -17.09580 -16.68173 -16.54717 -16.13941 -16.03456 -15.83349 -15.59952 -15.35022 -15.28325 -14.96921 -14.78641 -14.60475 -14.47658 -14.18185 -13.77084 -13.54348 -13.40030 -13.36708 -13.11866 -13.03630 -12.85663 -12.77082 -12.62739 -12.38289 -12.16344 -12.06718 -12.04579 -12.01832 -11.90040 -11.65932 -11.50037 -11.48299 -11.44411 -11.24696 -11.14877 -10.90766 -10.73206 -10.36158 -10.00823 -8.98284 -7.95369 -5.23541 1.45884 1.48087 1.56522 1.64872 2.14045 2.55771 2.83872 3.37863 3.54459 3.69805 3.72509 3.75840 3.88607 3.94216 4.05267 4.10565 4.15593 4.17715 4.23053 4.33718 4.41714 4.43356 4.44686 4.48923 4.53688 4.53872 4.56026 4.58546 4.60200 4.64314 4.84270 4.86309 4.95056 4.99066 5.05070 5.07598 5.10716 5.11304 5.14080 5.17414 5.21050 5.22600 5.24957 5.29821 5.32384 5.43988 5.46591 5.53139 5.56360 5.62687 6.27396 6.31680 6.61673 7.31893 7.33349 8.11302 8.34354 9.28322 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023151 B = 0.001788 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.162506 B =15655.768666 C =16018.561628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.092 3.908 4 H 0.082 0.918 5 C -0.142 4.142 6 C -0.108 4.108 7 C -0.112 4.112 8 C -0.091 4.091 9 H 0.131 0.869 10 C 0.512 3.488 11 O -0.588 6.588 12 N -0.709 5.709 13 C 0.151 3.849 14 H 0.064 0.936 15 C -0.110 4.110 16 C -0.102 4.102 17 C -0.082 4.082 18 H 0.068 0.932 19 C 0.153 3.847 20 N -0.744 5.744 21 C -0.247 4.247 22 H 0.074 0.926 23 C -0.077 4.077 24 N -0.970 5.970 25 Si 0.975 3.025 26 H -0.284 1.284 27 H -0.296 1.296 28 H -0.271 1.271 29 C -0.101 4.101 30 C -0.116 4.116 31 C -0.095 4.095 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.417 0.583 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.012 0.988 47 H 0.023 0.977 48 H 0.374 0.626 49 H 0.251 0.749 50 H 0.048 0.952 51 H 0.039 0.961 52 H 0.072 0.928 53 H 0.040 0.960 54 H 0.057 0.943 55 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.509 3.987 1.789 34.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C 0.035 3.965 4 H 0.100 0.900 5 C -0.180 4.180 6 C -0.145 4.145 7 C -0.150 4.150 8 C -0.112 4.112 9 H 0.149 0.851 10 C 0.299 3.701 11 O -0.468 6.468 12 N -0.361 5.361 13 C 0.046 3.954 14 H 0.082 0.918 15 C -0.148 4.148 16 C -0.141 4.141 17 C -0.101 4.101 18 H 0.087 0.913 19 C 0.026 3.974 20 N -0.387 5.387 21 C -0.379 4.379 22 H 0.092 0.908 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.803 3.197 26 H -0.211 1.211 27 H -0.222 1.222 28 H -0.196 1.196 29 C -0.140 4.140 30 C -0.154 4.154 31 C -0.134 4.134 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.255 0.745 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.101 0.899 46 H 0.030 0.970 47 H 0.041 0.959 48 H 0.206 0.794 49 H 0.060 0.940 50 H 0.067 0.933 51 H 0.058 0.942 52 H 0.091 0.909 53 H 0.059 0.941 54 H 0.076 0.924 55 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -33.990 3.096 1.313 34.156 hybrid contribution 1.276 -0.363 0.390 1.383 sum -32.714 2.732 1.702 32.872 Atomic orbital electron populations 1.22959 0.79581 1.03580 1.00976 1.87903 1.21435 1.29005 1.95248 1.22184 0.93886 0.84377 0.96096 0.89983 1.22064 1.01835 0.97858 0.96232 1.21465 0.95408 0.95887 1.01745 1.21606 0.98918 1.02397 0.92036 1.21264 0.93028 0.98916 0.98033 0.85148 1.21176 0.86980 0.83121 0.78774 1.90719 1.73314 1.32321 1.50452 1.45952 1.20014 1.11834 1.58264 1.20862 0.81840 0.98778 0.93933 0.91801 1.21712 0.97296 0.94557 1.01226 1.21435 0.92971 1.02374 0.97299 1.21236 0.93843 0.96553 0.98483 0.91341 1.20895 0.87730 0.96839 0.91907 1.42602 1.02975 1.85673 1.07460 1.19671 0.85315 1.39035 0.93849 0.90799 1.25583 1.02238 1.03447 0.95683 1.69821 1.32845 1.57141 1.02266 0.85122 0.79972 0.77216 0.77350 1.21124 1.22216 1.19587 1.21360 0.96147 0.97128 0.99356 1.21779 0.94175 1.00765 0.98719 1.21293 0.95580 0.95936 1.00562 0.92999 0.89189 0.92784 0.92866 0.90516 0.90030 0.89347 0.93129 0.88798 0.74538 0.89051 0.89655 0.91954 0.89889 0.96971 0.95880 0.79396 0.94043 0.93324 0.94187 0.90893 0.94083 0.92402 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.49 16 2 O -0.42 -7.70 10.35 -148.98 -1.54 -9.24 16 3 C 0.09 1.30 2.61 30.60 0.08 1.38 16 4 H 0.08 0.79 7.79 -2.39 -0.02 0.77 16 5 C -0.14 -1.62 5.54 30.60 0.17 -1.45 16 6 C -0.11 -0.77 5.92 30.59 0.18 -0.59 16 7 C -0.11 -1.16 5.10 30.60 0.16 -1.00 16 8 C -0.09 -1.25 2.52 -11.54 -0.03 -1.28 16 9 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 10 C 0.51 11.03 7.12 87.66 0.62 11.66 16 11 O -0.59 -19.29 15.65 -3.02 -0.05 -19.34 16 12 N -0.71 -11.84 4.97 -442.54 -2.20 -14.04 16 13 C 0.15 3.31 2.46 44.99 0.11 3.42 16 14 H 0.06 1.75 7.58 -2.38 -0.02 1.73 16 15 C -0.11 -1.85 5.39 30.60 0.16 -1.69 16 16 C -0.10 -2.31 5.20 30.59 0.16 -2.15 16 17 C -0.08 -2.60 2.23 -10.79 -0.02 -2.62 16 18 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 19 C 0.15 6.26 5.65 86.38 0.49 6.75 16 20 N -0.74 -39.18 5.33 -343.45 -1.83 -41.01 16 21 C -0.25 -14.28 9.99 84.04 0.84 -13.44 16 22 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 23 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 24 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 25 Si 0.97 47.33 29.55 68.60 2.03 49.36 16 26 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 29 C -0.10 -3.44 5.07 30.58 0.16 -3.28 16 30 C -0.12 -3.20 5.49 30.58 0.17 -3.03 16 31 C -0.10 -1.80 4.15 30.59 0.13 -1.68 16 32 H 0.05 0.43 8.08 -2.39 -0.02 0.41 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.41 7.87 -2.39 -0.02 0.40 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.69 7.87 -2.39 -0.02 0.67 16 37 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 0.58 7.56 -2.39 -0.02 0.56 16 41 H 0.42 3.72 8.02 -92.71 -0.74 2.98 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 46 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.37 20.85 6.85 -92.71 -0.63 20.22 16 49 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 50 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.04 1.63 7.18 -2.39 -0.02 1.61 16 52 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 53 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 54 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 55 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 Total: -1.00 -77.80 422.40 1.22 -76.58 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: -0.53 Total: 29.91 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 5.06 Total: -11.62 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -3.75 Total: -115.65 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -1.59 Total: -28.58 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -77.80 1.22 -76.58 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733689173.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.910 kcal (2) G-P(sol) polarization free energy of solvation -77.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds