Wall clock time and date at job start Tue Mar 31 2020 22:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 H 1.08998 * 109.47145 * 29.99590 * 3 2 1 5 5 C 1.52996 * 109.47031 * 269.99750 * 3 2 1 6 6 C 1.53006 * 109.47098 * 300.00156 * 5 3 2 7 7 C 1.52998 * 109.46859 * 299.99833 * 6 5 3 8 8 C 1.52996 * 109.47129 * 60.00186 * 7 6 5 9 9 H 1.09006 * 109.47128 * 60.00131 * 8 7 6 10 10 C 1.50701 * 109.47303 * 179.97438 * 8 7 6 11 11 O 1.21284 * 119.99907 * 119.99819 * 10 8 7 12 12 N 1.34781 * 120.00124 * 300.00234 * 10 8 7 13 13 C 1.46501 * 120.00049 * 179.97438 * 12 10 8 14 14 H 1.08995 * 109.47106 * 34.99881 * 13 12 10 15 15 C 1.53000 * 109.46828 * 154.99619 * 13 12 10 16 16 C 1.53002 * 109.46805 * 179.97438 * 15 13 12 17 17 C 1.52995 * 109.47722 * 300.00551 * 16 15 13 18 18 H 1.09005 * 109.47054 * 299.99851 * 17 16 15 19 19 C 1.52998 * 109.47115 * 179.97438 * 17 16 15 20 20 N 1.46504 * 109.47025 * 174.99792 * 19 17 16 21 21 C 1.36929 * 120.00004 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00571 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00286 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99492 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00532 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46765 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47060 * 119.99678 * 25 23 21 28 28 H 1.48499 * 109.47406 * 240.00174 * 25 23 21 29 29 C 1.53004 * 109.47140 * 59.99651 * 17 16 15 30 30 C 1.52998 * 109.47021 * 274.99607 * 13 12 10 31 31 C 1.52998 * 109.46942 * 149.99763 * 3 2 1 32 32 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 33 33 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 34 34 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 35 35 H 1.08997 * 109.47597 * 59.99980 * 5 3 2 36 36 H 1.09001 * 109.47120 * 180.02562 * 5 3 2 37 37 H 1.09004 * 109.47204 * 180.02562 * 6 5 3 38 38 H 1.09001 * 109.46909 * 60.00147 * 6 5 3 39 39 H 1.09001 * 109.47617 * 299.99881 * 7 6 5 40 40 H 1.09009 * 109.46650 * 179.97438 * 7 6 5 41 41 H 0.97003 * 119.99742 * 359.97438 * 12 10 8 42 42 H 1.08997 * 109.47749 * 299.99947 * 15 13 12 43 43 H 1.09005 * 109.46987 * 60.00188 * 15 13 12 44 44 H 1.09005 * 109.46734 * 60.00597 * 16 15 13 45 45 H 1.09001 * 109.47040 * 180.02562 * 16 15 13 46 46 H 1.09001 * 109.47204 * 294.99549 * 19 17 16 47 47 H 1.09002 * 109.47315 * 55.00210 * 19 17 16 48 48 H 0.97006 * 119.99572 * 0.02562 * 20 19 17 49 49 H 0.97000 * 120.00095 * 180.02562 * 24 23 21 50 50 H 1.09005 * 109.46984 * 60.00157 * 29 17 16 51 51 H 1.08995 * 109.46754 * 179.97438 * 29 17 16 52 52 H 1.08995 * 109.47404 * 300.00092 * 30 13 12 53 53 H 1.09001 * 109.47012 * 60.00201 * 30 13 12 54 54 H 1.09001 * 109.47250 * 179.97438 * 31 3 2 55 55 H 1.09003 * 109.47592 * 299.99892 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.1516 0.7973 -2.1637 7 6 4.5002 0.7552 -1.4424 8 6 4.2927 0.2893 0.0001 9 1 3.8494 -0.7065 0.0001 10 6 5.6212 0.2472 0.7104 11 8 5.8034 0.9294 1.6965 12 7 6.6068 -0.5484 0.2498 13 6 7.8984 -0.5889 0.9401 14 1 7.7406 -0.4780 2.0128 15 6 8.5839 -1.9279 0.6610 16 6 9.9331 -1.9699 1.3814 17 6 10.8175 -0.8289 0.8749 18 1 10.9749 -0.9399 -0.1980 19 6 12.1664 -0.8706 1.5958 20 7 13.0554 0.1458 1.0275 21 6 14.3252 0.2960 1.5175 22 1 14.6715 -0.3351 2.3227 23 6 15.1674 1.2594 0.9795 24 7 14.7452 2.0288 -0.0014 25 14 16.8998 1.4638 1.6474 26 1 17.1280 0.4839 2.7397 27 1 17.8813 1.2276 0.5583 28 1 17.0677 2.8418 2.1749 29 6 10.1319 0.5102 1.1539 30 6 8.7830 0.5522 0.4340 31 6 3.3589 1.2633 0.7213 32 1 -0.3633 0.5139 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.2569 1.8014 -1.9564 36 1 2.6614 2.7669 -1.4425 37 1 3.2997 1.1294 -3.1913 38 1 2.7082 -0.1985 -2.1637 39 1 4.9436 1.7509 -1.4424 40 1 5.1653 0.0608 -1.9560 41 1 6.4608 -1.0943 -0.5387 42 1 7.9537 -2.7409 1.0215 43 1 8.7416 -2.0388 -0.4118 44 1 9.7757 -1.8589 2.4543 45 1 10.4217 -2.9237 1.1823 46 1 12.0176 -0.6708 2.6570 47 1 12.6148 -1.8562 1.4709 48 1 12.7442 0.7129 0.3046 49 1 15.3337 2.7018 -0.3776 50 1 9.9745 0.6212 2.2268 51 1 10.7622 1.3231 0.7935 52 1 8.9407 0.4414 -0.6388 53 1 8.2945 1.5062 0.6327 54 1 3.8024 2.2590 0.7209 55 1 3.2111 0.9314 1.7490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733689174.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:01 Heat of formation + Delta-G solvation = -135.395290 kcal Electronic energy + Delta-G solvation = -30093.935229 eV Core-core repulsion = 26128.246363 eV Total energy + Delta-G solvation = -3965.688866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.47995 -40.14734 -39.22290 -36.85778 -36.62823 -35.12037 -33.16801 -32.03239 -31.70741 -31.26239 -30.19824 -27.32294 -26.85842 -25.03852 -24.18604 -23.56400 -23.38132 -21.94159 -21.42303 -20.82316 -20.42562 -19.16379 -18.30268 -17.44495 -16.91967 -16.68219 -16.61751 -16.21245 -16.05751 -15.78144 -15.62050 -15.38138 -15.27593 -14.93427 -14.79693 -14.59393 -14.25614 -13.80815 -13.67741 -13.55530 -13.41454 -13.36993 -13.14801 -13.08537 -12.88005 -12.81325 -12.78122 -12.29417 -12.21762 -12.11934 -12.05134 -12.02942 -11.90254 -11.77951 -11.45604 -11.40245 -11.24453 -11.18003 -11.13579 -10.91379 -10.61989 -10.34367 -9.99743 -8.98180 -7.95381 -5.23528 1.46093 1.47283 1.57445 1.67151 2.21407 2.55781 2.89269 3.37968 3.58260 3.69464 3.73704 3.75220 3.85592 3.94800 4.07767 4.11764 4.17405 4.20893 4.28478 4.41269 4.43489 4.45201 4.47566 4.54193 4.55609 4.58510 4.60056 4.60387 4.66393 4.71704 4.83797 4.87435 4.94774 4.98164 5.07310 5.07912 5.11309 5.13549 5.15607 5.17863 5.21508 5.24300 5.27157 5.30966 5.32556 5.46866 5.49436 5.53445 5.57265 5.62675 6.27574 6.32523 6.61785 7.31901 7.33440 8.11211 8.34420 9.28555 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026193 B = 0.001820 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.738773 B =15382.312351 C =15813.163589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.092 3.908 4 H 0.070 0.930 5 C -0.142 4.142 6 C -0.107 4.107 7 C -0.108 4.108 8 C -0.091 4.091 9 H 0.113 0.887 10 C 0.512 3.488 11 O -0.587 6.587 12 N -0.712 5.712 13 C 0.151 3.849 14 H 0.064 0.936 15 C -0.111 4.111 16 C -0.102 4.102 17 C -0.083 4.083 18 H 0.068 0.932 19 C 0.153 3.847 20 N -0.744 5.744 21 C -0.245 4.245 22 H 0.074 0.926 23 C -0.078 4.078 24 N -0.970 5.970 25 Si 0.974 3.026 26 H -0.266 1.266 27 H -0.291 1.291 28 H -0.294 1.294 29 C -0.101 4.101 30 C -0.115 4.115 31 C -0.095 4.095 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.415 0.585 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.082 0.918 46 H 0.013 0.987 47 H 0.023 0.977 48 H 0.374 0.626 49 H 0.251 0.749 50 H 0.049 0.951 51 H 0.040 0.960 52 H 0.071 0.929 53 H 0.043 0.957 54 H 0.071 0.929 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.814 -7.882 -5.314 34.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C 0.034 3.966 4 H 0.088 0.912 5 C -0.180 4.180 6 C -0.145 4.145 7 C -0.145 4.145 8 C -0.112 4.112 9 H 0.131 0.869 10 C 0.300 3.700 11 O -0.467 6.467 12 N -0.363 5.363 13 C 0.046 3.954 14 H 0.082 0.918 15 C -0.149 4.149 16 C -0.140 4.140 17 C -0.101 4.101 18 H 0.086 0.914 19 C 0.027 3.973 20 N -0.387 5.387 21 C -0.377 4.377 22 H 0.092 0.908 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.803 3.197 26 H -0.191 1.191 27 H -0.218 1.218 28 H -0.221 1.221 29 C -0.139 4.139 30 C -0.154 4.154 31 C -0.133 4.133 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.252 0.748 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.031 0.969 47 H 0.041 0.959 48 H 0.206 0.794 49 H 0.060 0.940 50 H 0.068 0.932 51 H 0.059 0.941 52 H 0.090 0.910 53 H 0.062 0.938 54 H 0.090 0.910 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -32.442 -7.644 -4.488 33.632 hybrid contribution 0.997 0.943 -0.005 1.372 sum -31.446 -6.701 -4.493 32.464 Atomic orbital electron populations 1.22925 0.80155 1.03533 1.00507 1.87881 1.20701 1.27951 1.95160 1.22122 0.93694 0.84842 0.95937 0.91210 1.22054 1.00825 0.99746 0.95357 1.21381 0.93842 1.00439 0.98794 1.21544 0.98923 1.01830 0.92237 1.21214 0.90821 1.02891 0.96242 0.86889 1.21286 0.86690 0.78225 0.83811 1.90692 1.83188 1.44185 1.28672 1.46007 1.12616 1.45387 1.32296 1.20863 0.82163 0.95718 0.96665 0.91751 1.21715 0.95737 0.95235 1.02224 1.21429 0.94522 0.97884 1.00181 1.21238 0.93578 0.95361 0.99971 0.91406 1.20892 0.89940 0.91246 0.95270 1.42611 1.11948 1.41432 1.42717 1.19708 0.90622 1.13834 1.13531 0.90774 1.25584 1.02661 0.99092 0.99677 1.69829 1.37288 1.25213 1.29784 0.85054 0.79826 0.77236 0.77540 1.19062 1.21822 1.22136 1.21358 0.95398 0.97420 0.99749 1.21774 0.94757 0.98284 1.00540 1.21406 0.93711 0.99546 0.98655 0.93805 0.93137 0.88841 0.90661 0.90793 0.90656 0.90953 0.92443 0.89879 0.74813 0.89296 0.89799 0.91878 0.89952 0.96877 0.95918 0.79383 0.94042 0.93220 0.94081 0.91013 0.93837 0.91020 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.82 113.37 1.23 1.45 16 2 O -0.40 -5.63 9.00 -148.98 -1.34 -6.97 16 3 C 0.09 1.21 2.92 30.59 0.09 1.30 16 4 H 0.07 0.81 7.79 -2.39 -0.02 0.79 16 5 C -0.14 -1.50 5.63 30.59 0.17 -1.33 16 6 C -0.11 -1.10 5.78 30.60 0.18 -0.93 16 7 C -0.11 -1.36 5.10 30.59 0.16 -1.20 16 8 C -0.09 -1.49 2.38 -11.54 -0.03 -1.52 16 9 H 0.11 1.68 7.68 -2.38 -0.02 1.66 16 10 C 0.51 11.77 7.12 87.66 0.62 12.40 16 11 O -0.59 -19.22 15.65 -3.04 -0.05 -19.27 16 12 N -0.71 -13.27 4.97 -442.53 -2.20 -15.47 16 13 C 0.15 3.47 2.46 44.99 0.11 3.58 16 14 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 15 C -0.11 -2.02 5.39 30.59 0.16 -1.86 16 16 C -0.10 -2.38 5.20 30.59 0.16 -2.22 16 17 C -0.08 -2.65 2.23 -10.79 -0.02 -2.67 16 18 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 19 C 0.15 6.30 5.65 86.38 0.49 6.79 16 20 N -0.74 -39.23 5.33 -343.45 -1.83 -41.06 16 21 C -0.25 -14.18 9.99 84.04 0.84 -13.34 16 22 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 23 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 24 N -0.97 -60.90 13.06 21.65 0.28 -60.62 16 25 Si 0.97 47.36 29.55 68.60 2.03 49.38 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 28 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 29 C -0.10 -3.43 5.07 30.58 0.16 -3.27 16 30 C -0.11 -3.22 5.49 30.58 0.17 -3.05 16 31 C -0.10 -1.70 4.23 30.59 0.13 -1.57 16 32 H 0.04 0.35 8.08 -2.39 -0.02 0.33 16 33 H 0.05 0.33 7.87 -2.39 -0.02 0.31 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.64 7.87 -2.39 -0.02 0.62 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.07 0.77 7.68 -2.39 -0.02 0.75 16 39 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.81 7.56 -2.38 -0.02 0.79 16 41 H 0.41 4.91 8.02 -92.71 -0.74 4.17 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 45 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 46 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.37 20.88 6.85 -92.70 -0.63 20.24 16 49 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 50 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 51 H 0.04 1.67 7.18 -2.39 -0.02 1.65 16 52 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 53 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 54 H 0.07 1.42 8.10 -2.39 -0.02 1.40 16 55 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 Total: -1.00 -73.97 420.33 1.44 -72.53 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: -0.53 Total: 33.08 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 5.07 Total: -11.60 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -3.75 Total: -117.16 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -1.39 Total: -26.24 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.38 kcal Total: -73.97 1.44 -72.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733689174.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.861 kcal (2) G-P(sol) polarization free energy of solvation -73.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds