Wall clock time and date at job start Tue Mar 31 2020 22:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42895 * 113.99905 * 2 1 4 4 H 1.08996 * 109.47554 * 330.00326 * 3 2 1 5 5 C 1.52997 * 109.46920 * 90.00259 * 3 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.46626 * 299.99539 * 6 5 3 8 8 C 1.52997 * 109.46991 * 60.00378 * 7 6 5 9 9 H 1.09001 * 109.47289 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47466 * 59.99672 * 8 7 6 11 11 O 1.21283 * 120.00261 * 239.99996 * 10 8 7 12 12 N 1.34776 * 119.99863 * 59.99879 * 10 8 7 13 13 C 1.46505 * 119.99811 * 180.02562 * 12 10 8 14 14 H 1.08992 * 109.47408 * 324.99662 * 13 12 10 15 15 C 1.52999 * 109.47399 * 85.00097 * 13 12 10 16 16 C 1.52997 * 109.47392 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47181 * 299.99599 * 16 15 13 18 18 H 1.08998 * 109.47302 * 300.00161 * 17 16 15 19 19 C 1.52992 * 109.47371 * 179.97438 * 17 16 15 20 20 N 1.46501 * 109.46821 * 65.00399 * 19 17 16 21 21 C 1.36946 * 120.00044 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99544 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00076 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99979 * 0.02562 * 23 21 20 25 25 Si 1.86791 * 119.99802 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47510 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47234 * 120.00312 * 25 23 21 28 28 H 1.48502 * 109.47169 * 240.00177 * 25 23 21 29 29 C 1.53008 * 109.46625 * 59.99862 * 17 16 15 30 30 C 1.52997 * 109.47454 * 299.99971 * 29 17 16 31 31 C 1.52996 * 109.47131 * 299.99311 * 8 7 6 32 32 H 1.09002 * 109.46945 * 299.99922 * 1 2 3 33 33 H 1.09006 * 109.46763 * 59.99892 * 1 2 3 34 34 H 1.09000 * 109.47216 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.47502 * 60.00157 * 5 3 2 36 36 H 1.09001 * 109.47289 * 299.99954 * 5 3 2 37 37 H 1.08993 * 109.46955 * 60.00011 * 6 5 3 38 38 H 1.09000 * 109.47050 * 179.97438 * 6 5 3 39 39 H 1.09002 * 109.46719 * 180.02562 * 7 6 5 40 40 H 1.08993 * 109.47839 * 299.99931 * 7 6 5 41 41 H 0.96999 * 120.00497 * 0.02562 * 12 10 8 42 42 H 1.08997 * 109.46780 * 300.00219 * 15 13 12 43 43 H 1.08998 * 109.47093 * 59.99863 * 15 13 12 44 44 H 1.08996 * 109.47340 * 180.02562 * 16 15 13 45 45 H 1.08998 * 109.47134 * 59.99863 * 16 15 13 46 46 H 1.08997 * 109.47471 * 185.00265 * 19 17 16 47 47 H 1.08998 * 109.47643 * 305.00499 * 19 17 16 48 48 H 0.97000 * 120.00469 * 359.97438 * 20 19 17 49 49 H 0.97000 * 119.99967 * 179.97438 * 24 23 21 50 50 H 1.09006 * 109.46593 * 179.97438 * 29 17 16 51 51 H 1.08998 * 109.47036 * 60.00137 * 29 17 16 52 52 H 1.09000 * 109.46831 * 300.00548 * 30 29 17 53 53 H 1.08996 * 109.47159 * 180.02562 * 30 29 17 54 54 H 1.08996 * 109.47452 * 300.00000 * 31 8 7 55 55 H 1.09000 * 109.47054 * 180.02562 * 31 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2177 1.7713 1.4425 6 6 2.8394 3.1693 1.4425 7 6 4.1880 3.1276 0.7212 8 6 3.9806 2.6618 -0.7213 9 1 4.9413 2.6325 -1.2355 10 6 3.0604 3.6208 -1.4316 11 8 2.0106 3.2252 -1.8924 12 7 3.4040 4.9182 -1.5546 13 6 2.5091 5.8507 -2.2446 14 1 2.0116 5.3360 -3.0665 15 6 1.4604 6.3736 -1.2609 16 6 0.5255 7.3469 -1.9816 17 6 1.3376 8.5206 -2.5328 18 1 1.8352 9.0358 -1.7111 19 6 0.4029 9.4936 -3.2540 20 7 -0.5262 10.0849 -2.2879 21 6 -1.4628 10.9925 -2.7058 22 1 -1.5167 11.2719 -3.7476 23 6 -2.3434 11.5524 -1.7904 24 7 -2.2780 11.2115 -0.5209 25 14 -3.6214 12.7897 -2.3606 26 1 -3.4878 13.0005 -3.8245 27 1 -4.9803 12.2733 -2.0572 28 1 -3.4124 14.0787 -1.6533 29 6 2.3864 7.9977 -3.5165 30 6 3.3213 7.0244 -2.7958 31 6 3.3589 1.2638 -0.7214 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 2.8830 1.0774 1.9563 36 1 1.2569 1.8013 1.9564 37 1 2.1738 3.8629 0.9289 38 1 2.9868 3.5014 2.4702 39 1 4.6312 4.1235 0.7216 40 1 4.8537 2.4340 1.2348 41 1 4.2437 5.2347 -1.1864 42 1 0.8816 5.5375 -0.8686 43 1 1.9580 6.8884 -0.4390 44 1 -0.2213 7.7197 -1.2807 45 1 0.0279 6.8317 -2.8033 46 1 0.9910 10.2827 -3.7225 47 1 -0.1601 8.9577 -4.0182 48 1 -0.4780 9.8337 -1.3522 49 1 -2.8931 11.6030 0.1188 50 1 2.9647 8.8340 -3.9095 51 1 1.8889 7.4825 -4.3382 52 1 3.8188 7.5396 -1.9741 53 1 4.0687 6.6523 -3.4965 54 1 4.0245 0.5701 -0.2078 55 1 3.2115 0.9318 -1.7491 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733689175.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:05 Heat of formation + Delta-G solvation = -132.181650 kcal Electronic energy + Delta-G solvation = -30825.601813 eV Core-core repulsion = 26860.052301 eV Total energy + Delta-G solvation = -3965.549512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.74705 -40.06726 -38.98276 -37.11291 -36.65545 -35.13925 -33.17172 -32.08011 -31.70223 -31.15083 -30.16344 -27.37761 -26.87456 -25.00475 -24.13293 -23.51934 -23.33118 -22.26604 -21.66184 -21.08916 -20.18599 -19.16021 -17.92469 -17.58470 -17.20388 -16.72373 -16.68242 -16.18127 -16.01071 -15.82657 -15.52955 -15.29273 -15.23502 -14.97202 -14.87879 -14.60280 -14.37460 -13.98419 -13.78140 -13.52550 -13.36836 -13.20316 -13.10814 -13.08565 -12.96641 -12.88503 -12.79736 -12.60834 -12.12903 -12.06490 -12.02974 -11.96644 -11.91123 -11.82077 -11.49003 -11.46898 -11.40295 -11.17237 -11.15189 -10.91993 -10.49683 -10.34307 -9.95008 -8.99238 -7.96374 -5.24545 1.45344 1.46444 1.56545 1.69529 2.22950 2.54863 2.78150 3.37064 3.64931 3.72908 3.73462 3.76416 3.78411 3.94892 4.07679 4.10664 4.17494 4.18798 4.24982 4.37511 4.43172 4.44057 4.47221 4.48475 4.50746 4.53472 4.57716 4.59441 4.63167 4.69688 4.76785 4.83647 4.93995 4.97328 5.02601 5.06824 5.07362 5.12372 5.13233 5.15301 5.21109 5.22088 5.24172 5.31091 5.31791 5.39937 5.46084 5.52954 5.58614 5.63327 6.26537 6.26689 6.65182 7.32555 7.36144 8.10212 8.33250 9.27547 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.002279 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.025944 B =12283.109037 C =13225.152129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.405 6.405 3 C 0.070 3.930 4 H 0.063 0.937 5 C -0.137 4.137 6 C -0.122 4.122 7 C -0.106 4.106 8 C -0.098 4.098 9 H 0.136 0.864 10 C 0.512 3.488 11 O -0.581 6.581 12 N -0.711 5.711 13 C 0.153 3.847 14 H 0.064 0.936 15 C -0.113 4.113 16 C -0.101 4.101 17 C -0.082 4.082 18 H 0.067 0.933 19 C 0.153 3.847 20 N -0.745 5.745 21 C -0.244 4.244 22 H 0.074 0.926 23 C -0.078 4.078 24 N -0.970 5.970 25 Si 0.974 3.026 26 H -0.266 1.266 27 H -0.294 1.294 28 H -0.291 1.291 29 C -0.102 4.102 30 C -0.111 4.111 31 C -0.093 4.093 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.039 0.961 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.416 0.584 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.048 0.952 46 H 0.023 0.977 47 H 0.012 0.988 48 H 0.374 0.626 49 H 0.251 0.749 50 H 0.081 0.919 51 H 0.062 0.938 52 H 0.084 0.916 53 H 0.090 0.910 54 H 0.093 0.907 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.738 -20.861 1.822 29.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.325 6.325 3 C 0.013 3.987 4 H 0.081 0.919 5 C -0.175 4.175 6 C -0.160 4.160 7 C -0.144 4.144 8 C -0.119 4.119 9 H 0.153 0.847 10 C 0.300 3.700 11 O -0.461 6.461 12 N -0.362 5.362 13 C 0.048 3.952 14 H 0.082 0.918 15 C -0.152 4.152 16 C -0.139 4.139 17 C -0.101 4.101 18 H 0.086 0.914 19 C 0.027 3.973 20 N -0.388 5.388 21 C -0.376 4.376 22 H 0.092 0.908 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.803 3.197 26 H -0.191 1.191 27 H -0.221 1.221 28 H -0.218 1.218 29 C -0.141 4.141 30 C -0.149 4.149 31 C -0.131 4.131 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.253 0.747 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.057 0.943 45 H 0.067 0.933 46 H 0.040 0.960 47 H 0.030 0.970 48 H 0.206 0.794 49 H 0.060 0.940 50 H 0.100 0.900 51 H 0.080 0.920 52 H 0.102 0.898 53 H 0.109 0.891 54 H 0.112 0.888 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 20.043 -21.199 1.335 29.205 hybrid contribution -1.583 1.061 0.358 1.939 sum 18.460 -20.138 1.692 27.372 Atomic orbital electron populations 1.22841 0.80585 1.03424 0.99772 1.87778 1.20424 1.29068 1.95221 1.22540 0.96144 0.84118 0.95890 0.91928 1.22011 1.01156 0.97799 0.96498 1.21547 0.97107 0.95551 1.01763 1.21614 0.97127 1.03718 0.91906 1.21429 0.99657 0.92688 0.98139 0.84660 1.21217 0.86820 0.83308 0.78635 1.90652 1.26997 1.78165 1.50247 1.45981 1.23985 1.07924 1.58317 1.20822 0.90610 0.89900 0.93903 0.91776 1.21768 0.97097 0.97708 0.98643 1.21363 0.97536 0.95731 0.99317 1.21233 0.95671 0.94743 0.98443 0.91420 1.20890 0.90658 0.93888 0.91904 1.42622 1.38228 1.50432 1.07484 1.19692 1.08551 1.15569 0.93809 0.90827 1.25575 1.02428 1.03279 0.95695 1.69824 1.41301 1.48701 1.02265 0.85067 0.78493 0.78339 0.77840 1.19083 1.22144 1.21787 1.21434 0.96150 0.99190 0.97302 1.21709 0.97624 0.94355 1.01174 1.21333 0.95082 0.96016 1.00628 0.93969 0.95003 0.88005 0.90146 0.93153 0.94236 0.89947 0.89029 0.88198 0.74694 0.94020 0.91056 0.94271 0.93326 0.95955 0.96965 0.79385 0.94030 0.90013 0.91964 0.89773 0.89144 0.88847 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.82 113.37 1.23 1.84 16 2 O -0.41 -9.76 10.35 -148.98 -1.54 -11.30 16 3 C 0.07 1.55 2.32 30.59 0.07 1.62 16 4 H 0.06 1.78 5.15 -2.39 -0.01 1.77 16 5 C -0.14 -2.45 5.54 30.60 0.17 -2.28 16 6 C -0.12 -1.82 5.70 30.60 0.17 -1.65 16 7 C -0.11 -0.95 5.35 30.59 0.16 -0.78 16 8 C -0.10 -1.21 3.01 -11.54 -0.03 -1.25 16 9 H 0.14 0.83 8.14 -2.39 -0.02 0.82 16 10 C 0.51 10.11 5.61 87.66 0.49 10.60 16 11 O -0.58 -17.26 13.32 -3.04 -0.04 -17.30 16 12 N -0.71 -11.15 4.97 -442.53 -2.20 -13.34 16 13 C 0.15 3.21 2.45 44.99 0.11 3.32 16 14 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 15 C -0.11 -3.02 5.49 30.59 0.17 -2.86 16 16 C -0.10 -3.35 5.08 30.59 0.16 -3.19 16 17 C -0.08 -2.56 2.23 -10.79 -0.02 -2.58 16 18 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 19 C 0.15 6.22 5.65 86.38 0.49 6.71 16 20 N -0.74 -38.96 5.33 -343.46 -1.83 -40.79 16 21 C -0.24 -14.05 9.99 84.03 0.84 -13.21 16 22 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 23 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 24 N -0.97 -60.56 13.06 21.65 0.28 -60.28 16 25 Si 0.97 47.11 29.55 68.60 2.03 49.14 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 28 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 29 C -0.10 -2.28 5.20 30.60 0.16 -2.12 16 30 C -0.11 -1.83 5.39 30.60 0.17 -1.66 16 31 C -0.09 -1.59 4.74 30.59 0.15 -1.45 16 32 H 0.04 0.81 7.87 -2.39 -0.02 0.79 16 33 H 0.03 0.71 8.09 -2.38 -0.02 0.69 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.05 0.99 7.87 -2.39 -0.02 0.97 16 37 H 0.04 0.80 7.22 -2.39 -0.02 0.78 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 0.48 7.57 -2.39 -0.02 0.46 16 40 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.42 3.52 8.02 -92.71 -0.74 2.77 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.04 1.57 7.18 -2.39 -0.02 1.55 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.37 20.72 6.85 -92.71 -0.63 20.08 16 49 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 50 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 51 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 54 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 55 H 0.06 1.17 8.10 -2.39 -0.02 1.16 16 Total: -1.00 -75.25 415.88 1.11 -74.14 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.52 Total: 32.77 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 4.94 Total: -13.03 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -3.75 Total: -114.41 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -1.58 Total: -28.60 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -75.25 1.11 -74.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733689175.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.039 kcal (2) G-P(sol) polarization free energy of solvation -75.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds