Wall clock time and date at job start Tue Mar 31 2020 22:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00005 * 2 1 4 4 C 1.52998 * 109.47030 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46638 * 179.97438 * 4 3 2 6 6 C 1.50710 * 109.46868 * 179.97438 * 5 4 3 7 7 O 1.21273 * 119.99937 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99673 * 180.02562 * 6 5 4 9 9 C 1.46927 * 120.62518 * 179.97438 * 8 6 5 10 10 C 1.53185 * 108.89356 * 233.67394 * 9 8 6 11 11 C 1.53046 * 109.31389 * 305.29596 * 10 9 8 12 12 C 1.53002 * 109.46172 * 181.38679 * 11 10 9 13 13 H 1.09001 * 109.49313 * 300.06375 * 12 11 10 14 14 C 1.53044 * 109.49933 * 180.02562 * 12 11 10 15 15 C 1.53034 * 109.53640 * 178.67968 * 14 12 11 16 16 C 1.53193 * 109.31364 * 61.37085 * 15 14 12 17 17 N 1.46936 * 108.77158 * 305.35960 * 16 15 14 18 18 C 1.36939 * 120.62980 * 233.58615 * 17 16 15 19 19 H 1.08001 * 119.99466 * 152.79828 * 18 17 16 20 20 C 1.38809 * 119.99886 * 332.80164 * 18 17 16 21 21 N 1.31617 * 119.99794 * 159.75513 * 20 18 17 22 22 Si 1.86803 * 120.00211 * 339.75162 * 20 18 17 23 23 H 1.48497 * 109.46979 * 94.89554 * 22 20 18 24 24 H 1.48495 * 109.47027 * 214.89442 * 22 20 18 25 25 H 1.48501 * 109.47132 * 334.89789 * 22 20 18 26 26 C 1.46926 * 118.73663 * 53.60851 * 17 16 15 27 27 C 1.53041 * 109.53715 * 61.36758 * 11 10 9 28 28 C 1.47206 * 120.81612 * 0.13924 * 8 6 5 29 29 H 1.08996 * 109.47296 * 60.00196 * 1 2 3 30 30 H 1.09011 * 109.46939 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47301 * 300.00095 * 1 2 3 32 32 H 1.09003 * 109.47033 * 59.99481 * 3 2 1 33 33 H 1.08995 * 109.46631 * 299.99978 * 3 2 1 34 34 H 1.08995 * 109.47363 * 60.00182 * 4 3 2 35 35 H 1.09003 * 109.47212 * 299.99620 * 4 3 2 36 36 H 1.08998 * 109.47299 * 60.00501 * 5 4 3 37 37 H 1.08998 * 109.47518 * 299.99634 * 5 4 3 38 38 H 1.09009 * 109.58102 * 113.81860 * 9 8 6 39 39 H 1.08992 * 109.58857 * 353.53831 * 9 8 6 40 40 H 1.08998 * 109.50065 * 65.24498 * 10 9 8 41 41 H 1.09002 * 109.49900 * 185.34607 * 10 9 8 42 42 H 1.09000 * 109.46033 * 301.34590 * 11 10 9 43 43 H 1.08998 * 109.45766 * 298.70633 * 14 12 11 44 44 H 1.09004 * 109.45587 * 58.66120 * 14 12 11 45 45 H 1.09000 * 109.49441 * 181.31685 * 15 14 12 46 46 H 1.08999 * 109.50207 * 301.37966 * 15 14 12 47 47 H 1.08993 * 109.58697 * 65.14423 * 16 15 14 48 48 H 1.08998 * 109.58743 * 185.57414 * 16 15 14 49 49 H 0.96998 * 120.00270 * 180.02562 * 21 20 18 50 50 H 1.08999 * 109.58571 * 186.60479 * 26 17 16 51 51 H 1.08996 * 109.58556 * 66.18014 * 26 17 16 52 52 H 1.08998 * 109.49932 * 58.58156 * 27 11 10 53 53 H 1.09001 * 109.49763 * 178.68652 * 27 11 10 54 54 H 1.08992 * 109.53369 * 6.53631 * 28 8 6 55 55 H 1.09001 * 109.67341 * 246.23287 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1576 2.5824 0.0000 6 6 5.6600 2.4635 0.0013 7 8 6.1816 1.3686 0.0030 8 7 6.4239 3.5739 0.0015 9 6 7.8897 3.4740 0.0033 10 6 8.4416 4.2975 1.1711 11 6 7.9123 5.7303 1.0748 12 6 8.4890 6.5648 2.2202 13 1 8.1901 6.1295 3.1738 14 6 7.9597 7.9977 2.1251 15 6 8.5099 8.8248 3.2892 16 6 10.0388 8.8675 3.2023 17 7 10.5479 7.4903 3.1469 18 6 11.4988 7.0618 4.0342 19 1 11.5591 6.0162 4.2981 20 6 12.3853 7.9713 4.5945 21 7 13.0179 7.6723 5.7093 22 14 12.6803 9.6195 3.7663 23 1 11.7942 10.6445 4.3740 24 1 14.0986 10.0192 3.9507 25 1 12.3828 9.5050 2.3159 26 6 10.0176 6.5818 2.1212 27 6 6.3849 5.7191 1.1709 28 6 5.8097 4.9117 0.0036 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8463 -0.8900 34 1 3.8574 0.6436 -0.8891 35 1 3.8567 0.6439 0.8909 36 1 3.8357 3.1239 0.8895 37 1 3.8364 3.1228 -0.8904 38 1 8.2835 3.8623 -0.9361 39 1 8.1848 2.4312 0.1198 40 1 8.1203 3.8536 2.1133 41 1 9.5306 4.3083 1.1261 42 1 8.2130 6.1652 0.1217 43 1 8.2789 8.4408 1.1818 44 1 6.8706 7.9862 2.1706 45 1 8.1140 9.8388 3.2340 46 1 8.2112 8.3685 4.2330 47 1 10.3387 9.4043 2.3024 48 1 10.4408 9.3706 4.0816 49 1 13.6370 8.3080 6.1010 50 1 10.4057 5.5769 2.2872 51 1 10.3159 6.9323 1.1332 52 1 6.0830 5.2617 2.1131 53 1 6.0101 6.7417 1.1258 54 1 4.7303 4.8170 0.1217 55 1 6.0314 5.4187 -0.9355 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733941458.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:19 Heat of formation + Delta-G solvation = -101.572281 kcal Electronic energy + Delta-G solvation = -30294.328317 eV Core-core repulsion = 26330.106127 eV Total energy + Delta-G solvation = -3964.222190 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.34694 -40.00986 -38.87435 -38.13073 -35.55866 -34.74239 -33.98829 -32.78535 -31.92180 -31.01608 -28.80691 -27.20259 -26.88405 -25.92738 -24.53003 -23.59329 -23.03184 -22.62040 -21.36799 -20.67394 -19.82375 -18.75441 -18.16857 -17.39074 -17.34301 -17.27657 -16.58337 -16.43149 -16.01359 -15.76720 -15.55676 -15.43783 -15.10181 -14.94662 -14.83695 -14.55446 -14.48943 -14.36200 -14.03584 -13.82406 -13.55384 -13.29882 -13.15452 -12.98869 -12.87581 -12.77139 -12.59264 -12.49625 -12.32589 -12.11369 -11.96219 -11.88290 -11.84981 -11.68397 -11.62005 -11.47104 -11.33754 -11.17151 -10.83316 -10.75563 -10.58877 -10.57888 -9.60471 -8.88807 -8.17206 -5.48007 1.28348 1.39664 1.49260 1.64518 2.01336 2.40879 2.87703 3.05741 3.36349 3.55929 3.76002 3.82479 3.91436 3.99491 4.13827 4.18319 4.19161 4.20626 4.27465 4.33563 4.43632 4.47249 4.49475 4.49922 4.53453 4.57926 4.58767 4.60053 4.69590 4.71326 4.75986 4.83542 4.87293 4.88477 4.92110 4.99647 5.05706 5.08773 5.12182 5.13259 5.18285 5.20770 5.25236 5.28674 5.35683 5.44782 5.52733 5.64550 5.72598 5.86723 6.11913 6.27875 6.46863 6.93679 7.19951 7.64548 8.04489 9.03068 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025120 B = 0.001981 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.372978 B =14128.975199 C =14445.135498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.062 3.938 4 C -0.102 4.102 5 C -0.126 4.126 6 C 0.505 3.495 7 O -0.596 6.596 8 N -0.610 5.610 9 C 0.115 3.885 10 C -0.126 4.126 11 C -0.069 4.069 12 C -0.088 4.088 13 H 0.046 0.954 14 C -0.098 4.098 15 C -0.131 4.131 16 C 0.117 3.883 17 N -0.622 5.622 18 C -0.248 4.248 19 H 0.045 0.955 20 C -0.040 4.040 21 N -0.961 5.961 22 Si 0.953 3.047 23 H -0.276 1.276 24 H -0.312 1.312 25 H -0.258 1.258 26 C 0.149 3.851 27 C -0.127 4.127 28 C 0.105 3.895 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.045 0.955 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.045 0.955 47 H 0.033 0.967 48 H 0.041 0.959 49 H 0.261 0.739 50 H 0.044 0.956 51 H 0.032 0.968 52 H 0.056 0.944 53 H 0.103 0.897 54 H 0.115 0.885 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.036 -3.483 -17.178 33.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.347 6.347 3 C -0.014 4.014 4 C -0.141 4.141 5 C -0.165 4.165 6 C 0.295 3.705 7 O -0.477 6.477 8 N -0.343 5.343 9 C -0.008 4.008 10 C -0.165 4.165 11 C -0.088 4.088 12 C -0.108 4.108 13 H 0.064 0.936 14 C -0.135 4.135 15 C -0.170 4.170 16 C -0.008 4.008 17 N -0.346 5.346 18 C -0.377 4.377 19 H 0.063 0.937 20 C -0.234 4.234 21 N -0.607 5.607 22 Si 0.782 3.218 23 H -0.203 1.203 24 H -0.242 1.242 25 H -0.183 1.183 26 C 0.025 3.975 27 C -0.165 4.165 28 C -0.016 4.016 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.099 0.901 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.059 0.941 49 H 0.070 0.930 50 H 0.063 0.937 51 H 0.050 0.950 52 H 0.075 0.925 53 H 0.121 0.879 54 H 0.133 0.867 55 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -27.551 -4.173 -17.089 32.688 hybrid contribution 1.230 0.495 0.628 1.467 sum -26.321 -3.677 -16.461 31.262 Atomic orbital electron populations 1.22915 0.79354 1.03647 1.01097 1.87851 1.21649 1.29473 1.95683 1.22608 0.92508 0.84344 1.01914 1.21164 0.93752 0.96507 1.02648 1.21590 0.88914 0.98822 1.07166 1.21334 0.91154 0.83214 0.74772 1.90690 1.76186 1.28431 1.52382 1.48369 1.06494 1.07186 1.72241 1.21494 0.79947 1.00538 0.98826 1.21932 1.00724 0.96053 0.97743 1.21063 0.95900 0.93376 0.98489 1.21508 0.94879 0.96323 0.98102 0.93556 1.21498 1.00814 0.93584 0.97621 1.21949 0.94763 1.00884 0.99406 1.21430 0.95165 0.85887 0.98315 1.44492 1.44739 1.09688 1.35702 1.18858 1.07844 0.94261 1.16769 0.93715 1.25941 0.97604 1.02184 0.97668 1.69978 1.32564 1.38408 1.19766 0.85807 0.75252 0.80544 0.80209 1.20291 1.24167 1.18254 1.21183 0.93300 0.92815 0.90204 1.22015 0.94049 1.01889 0.98521 1.22121 0.99309 0.80574 0.99626 0.92731 0.89152 0.92999 0.91593 0.91108 0.92464 0.93030 0.86096 0.85339 0.90015 0.91667 0.93608 0.91343 0.89669 0.91320 0.89199 0.90051 0.93564 0.94876 0.94107 0.93049 0.93702 0.94971 0.92495 0.87872 0.86689 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.43 -7.45 10.70 -148.98 -1.59 -9.04 16 3 C 0.06 0.74 5.94 71.98 0.43 1.17 16 4 C -0.10 -1.68 4.87 30.59 0.15 -1.53 16 5 C -0.13 -1.42 4.06 29.85 0.12 -1.29 16 6 C 0.50 10.59 7.70 87.66 0.68 11.26 16 7 O -0.60 -18.75 15.39 -3.01 -0.05 -18.80 16 8 N -0.61 -10.81 2.99 -818.27 -2.44 -13.25 16 9 C 0.11 2.45 6.42 86.36 0.55 3.01 16 10 C -0.13 -2.95 5.05 30.67 0.16 -2.80 16 11 C -0.07 -1.36 1.74 -10.76 -0.02 -1.38 16 12 C -0.09 -2.44 1.92 -10.72 -0.02 -2.46 16 13 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 14 C -0.10 -2.33 4.85 30.62 0.15 -2.18 16 15 C -0.13 -4.08 6.08 30.67 0.19 -3.89 16 16 C 0.12 4.84 4.19 86.36 0.36 5.20 16 17 N -0.62 -29.25 2.77 -699.10 -1.94 -31.19 16 18 C -0.25 -14.39 10.04 84.03 0.84 -13.54 16 19 H 0.05 2.88 8.05 -2.91 -0.02 2.85 16 20 C -0.04 -2.37 5.24 84.86 0.44 -1.93 16 21 N -0.96 -61.79 13.97 21.65 0.30 -61.48 16 22 Si 0.95 47.33 24.35 68.60 1.67 49.00 16 23 H -0.28 -12.94 6.70 99.48 0.67 -12.28 16 24 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 25 H -0.26 -12.13 6.45 99.48 0.64 -11.49 16 26 C 0.15 5.57 5.28 86.36 0.46 6.03 16 27 C -0.13 -1.67 5.04 30.66 0.15 -1.52 16 28 C 0.10 1.01 6.35 86.30 0.55 1.55 16 29 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 35 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 36 H 0.12 0.80 7.70 -2.39 -0.02 0.78 16 37 H 0.13 0.62 7.96 -2.39 -0.02 0.60 16 38 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.06 1.73 7.00 -2.39 -0.02 1.72 16 40 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.78 6.50 -2.39 -0.02 1.76 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.09 1.55 6.33 -2.38 -0.02 1.53 16 45 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.03 1.32 6.98 -2.39 -0.02 1.30 16 48 H 0.04 1.91 4.50 -2.39 -0.01 1.90 16 49 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 50 H 0.04 1.79 6.52 -2.39 -0.02 1.77 16 51 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.10 0.96 6.33 -2.39 -0.02 0.94 16 54 H 0.12 0.41 5.97 -2.39 -0.01 0.40 16 55 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -80.74 406.69 3.12 -77.62 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.73 Total: 9.95 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 6.43 Total: -2.80 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -4.08 Total: -105.93 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -1.64 Total: -27.84 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.67 Total: 49.00 kcal Total: -80.74 3.12 -77.62 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733941458.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.950 kcal (2) G-P(sol) polarization free energy of solvation -80.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds