Wall clock time and date at job start Tue Mar 31 2020 22:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36934 * 119.99604 * 2 1 4 4 H 1.08006 * 120.00069 * 202.70953 * 3 2 1 5 5 C 1.38812 * 120.00273 * 22.70409 * 3 2 1 6 6 N 1.31620 * 120.00068 * 11.51865 * 5 3 2 7 7 Si 1.86797 * 119.99903 * 191.51649 * 5 3 2 8 8 H 1.48496 * 109.47305 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47264 * 120.00267 * 7 5 3 10 10 H 1.48508 * 109.47033 * 239.99945 * 7 5 3 11 11 C 1.46496 * 120.00126 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47217 * 270.00143 * 11 2 1 13 13 O 1.42897 * 109.47303 * 65.00083 * 12 11 2 14 14 C 1.42899 * 113.99720 * 180.02562 * 13 12 11 15 15 C 1.53008 * 109.46971 * 179.97438 * 14 13 12 16 16 N 1.46507 * 109.46741 * 64.99962 * 15 14 13 17 17 C 1.34772 * 119.99669 * 180.02562 * 16 15 14 18 18 O 1.21284 * 120.00526 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00148 * 180.02562 * 17 16 15 20 20 H 1.09004 * 109.46695 * 300.00356 * 19 17 16 21 21 C 1.53002 * 109.46866 * 59.99679 * 19 17 16 22 22 C 1.53002 * 109.47158 * 180.02562 * 21 19 17 23 23 C 1.53001 * 109.46947 * 300.00382 * 22 21 19 24 24 C 1.53002 * 109.47504 * 59.99829 * 23 22 21 25 25 C 1.52997 * 109.46845 * 300.00044 * 24 23 22 26 26 H 1.08999 * 109.47457 * 300.00017 * 25 24 23 27 27 C 1.53000 * 109.47157 * 179.97438 * 25 24 23 28 28 C 1.53007 * 117.49822 * 128.62084 * 27 25 24 29 29 C 1.53004 * 60.00211 * 252.51441 * 28 27 25 30 30 H 1.09008 * 109.47203 * 273.91424 * 1 2 3 31 31 H 1.08996 * 109.47700 * 33.91557 * 1 2 3 32 32 H 1.09008 * 109.47238 * 153.91756 * 1 2 3 33 33 H 0.96998 * 119.99903 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.46878 * 149.99879 * 11 2 1 35 35 H 1.09005 * 109.47081 * 30.00161 * 11 2 1 36 36 H 1.09005 * 109.47102 * 185.00350 * 12 11 2 37 37 H 1.08994 * 109.46999 * 304.99571 * 12 11 2 38 38 H 1.09000 * 109.47193 * 299.99834 * 14 13 12 39 39 H 1.08993 * 109.47663 * 60.00184 * 14 13 12 40 40 H 1.08995 * 109.47404 * 184.99831 * 15 14 13 41 41 H 1.09002 * 109.47052 * 305.00480 * 15 14 13 42 42 H 0.97000 * 120.00315 * 0.02562 * 16 15 14 43 43 H 1.08998 * 109.47676 * 300.00234 * 21 19 17 44 44 H 1.08995 * 109.47054 * 60.00596 * 21 19 17 45 45 H 1.08999 * 109.47578 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.47303 * 59.99886 * 22 21 19 47 47 H 1.09004 * 109.47396 * 299.99686 * 23 22 21 48 48 H 1.09000 * 109.47252 * 180.02562 * 23 22 21 49 49 H 1.08996 * 109.47175 * 180.02562 * 24 23 22 50 50 H 1.08995 * 109.47054 * 59.99773 * 24 23 22 51 51 H 1.08996 * 115.55644 * 274.33330 * 27 25 24 52 52 H 1.08998 * 117.49461 * 0.02562 * 28 27 25 53 53 H 1.09001 * 117.49546 * 145.02768 * 28 27 25 54 54 H 1.08994 * 117.49930 * 252.51657 * 29 28 27 55 55 H 1.09003 * 117.51932 * 107.47653 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1668 1.2223 -0.3611 5 6 1.5362 2.3415 0.4640 6 7 0.3917 2.2653 1.1095 7 14 2.3351 4.0046 0.1723 8 1 3.6071 3.8192 -0.5711 9 1 1.4181 4.8620 -0.6210 10 1 2.6154 4.6549 1.4776 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4432 13 8 1.2061 -1.9926 2.0822 14 6 1.3325 -2.4149 3.4415 15 6 -0.0566 -2.6879 4.0221 16 7 -0.6656 -3.8201 3.3195 17 6 -1.8983 -4.2424 3.6636 18 8 -2.5033 -3.6856 4.5552 19 6 -2.5246 -5.4074 2.9413 20 1 -2.6133 -5.1721 1.8807 21 6 -1.6464 -6.6480 3.1167 22 6 -2.2818 -7.8306 2.3829 23 6 -3.6714 -8.1033 2.9624 24 6 -4.5496 -6.8627 2.7870 25 6 -3.9141 -5.6802 3.5208 26 1 -3.8256 -5.9157 4.5814 27 6 -4.7919 -4.4395 3.3449 28 6 -5.1895 -3.6707 4.6067 29 6 -6.2295 -4.5119 3.8638 30 1 -0.3634 0.0702 1.0253 31 1 -0.3634 0.8528 -0.5734 32 1 -0.3634 -0.9231 -0.4519 33 1 -0.0371 3.0728 1.4334 34 1 3.1499 -1.1385 -0.5133 35 1 1.6084 -2.0286 -0.5130 36 1 3.0733 -2.6057 1.4449 37 1 2.9642 -0.9123 1.9819 38 1 1.9302 -3.3254 3.4850 39 1 1.8207 -1.6318 4.0214 40 1 0.0327 -2.9238 5.0824 41 1 -0.6824 -1.8041 3.8979 42 1 -0.1816 -4.2657 2.6067 43 1 -0.6566 -6.4539 2.7035 44 1 -1.5576 -6.8833 4.1772 45 1 -1.6565 -8.7145 2.5082 46 1 -2.3704 -7.5951 1.3224 47 1 -3.5830 -8.3388 4.0230 48 1 -4.1240 -8.9461 2.4400 49 1 -5.5393 -7.0569 3.2002 50 1 -4.6380 -6.6272 1.7265 51 1 -4.6126 -3.8612 2.4386 52 1 -4.8253 -4.0488 5.5620 53 1 -5.2717 -2.5865 4.5305 54 1 -6.9957 -3.9811 3.2989 55 1 -6.5499 -5.4437 4.3300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734280702.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:24 Heat of formation + Delta-G solvation = -76.425183 kcal Electronic energy + Delta-G solvation = -30768.790105 eV Core-core repulsion = 26805.658375 eV Total energy + Delta-G solvation = -3963.131730 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.41641 -39.39355 -38.75631 -37.20217 -37.15964 -35.55288 -33.42489 -32.36271 -31.31924 -30.64606 -29.24476 -27.82294 -25.11252 -24.77703 -24.28083 -23.32667 -22.97042 -22.13929 -21.33935 -21.07597 -20.60882 -18.77950 -18.19784 -17.59393 -17.41881 -16.90656 -16.61269 -16.17133 -16.04248 -15.62853 -15.44148 -15.22665 -15.12220 -14.89191 -14.74151 -14.73633 -14.16724 -14.00605 -13.84054 -13.47447 -13.26974 -13.14189 -12.98269 -12.75167 -12.63933 -12.52412 -12.45818 -12.36438 -12.33321 -12.16172 -11.99693 -11.95199 -11.78463 -11.67141 -11.58522 -11.31439 -11.28767 -10.98494 -10.76882 -10.63431 -10.40439 -10.22824 -9.98611 -8.73683 -7.78573 -5.26825 1.45211 1.46387 1.56729 1.77789 2.29464 2.51957 2.87661 3.01129 3.34691 3.58812 3.70613 3.76724 3.77130 4.00006 4.09050 4.14704 4.17516 4.20258 4.33210 4.39126 4.45709 4.47641 4.53301 4.54450 4.56489 4.59236 4.63202 4.64687 4.68954 4.76199 4.82179 4.90373 4.92032 4.94281 5.01119 5.04516 5.13819 5.19028 5.21141 5.25774 5.29897 5.32543 5.36673 5.37803 5.42739 5.46827 5.51757 5.64047 5.66005 5.82155 6.35094 6.47020 6.66340 7.18367 7.38392 7.92123 8.37612 9.24567 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.002495 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.178432 B =11219.393351 C =12037.739238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.197 3.803 2 N -0.613 5.613 3 C -0.259 4.259 4 H 0.076 0.924 5 C -0.058 4.058 6 N -0.937 5.937 7 Si 0.967 3.033 8 H -0.262 1.262 9 H -0.294 1.294 10 H -0.296 1.296 11 C 0.145 3.855 12 C 0.051 3.949 13 O -0.393 6.393 14 C 0.055 3.945 15 C 0.133 3.867 16 N -0.715 5.715 17 C 0.507 3.493 18 O -0.567 6.567 19 C -0.093 4.093 20 H 0.102 0.898 21 C -0.105 4.105 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.107 4.107 25 C -0.027 4.027 26 H 0.061 0.939 27 C -0.144 4.144 28 C -0.162 4.162 29 C -0.171 4.171 30 H -0.003 1.003 31 H 0.008 0.992 32 H 0.019 0.981 33 H 0.243 0.757 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.020 0.980 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.036 0.964 42 H 0.411 0.589 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.067 0.933 51 H 0.081 0.919 52 H 0.082 0.918 53 H 0.067 0.933 54 H 0.095 0.905 55 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 -25.092 3.956 25.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.336 5.336 3 C -0.389 4.389 4 H 0.093 0.907 5 C -0.253 4.253 6 N -0.585 5.585 7 Si 0.795 3.205 8 H -0.186 1.186 9 H -0.221 1.221 10 H -0.223 1.223 11 C 0.019 3.981 12 C -0.027 4.027 13 O -0.312 6.312 14 C -0.022 4.022 15 C 0.009 3.991 16 N -0.368 5.368 17 C 0.294 3.706 18 O -0.445 6.445 19 C -0.115 4.115 20 H 0.120 0.880 21 C -0.143 4.143 22 C -0.153 4.153 23 C -0.157 4.157 24 C -0.145 4.145 25 C -0.046 4.046 26 H 0.080 0.920 27 C -0.162 4.162 28 C -0.200 4.200 29 C -0.208 4.208 30 H 0.016 0.984 31 H 0.026 0.974 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.247 0.753 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.094 0.906 49 H 0.089 0.911 50 H 0.085 0.915 51 H 0.100 0.900 52 H 0.100 0.900 53 H 0.086 0.914 54 H 0.113 0.887 55 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.781 -24.547 4.536 25.623 hybrid contribution 0.656 1.762 0.150 1.886 sum -5.125 -22.785 4.686 23.820 Atomic orbital electron populations 1.20295 0.83006 0.94648 0.96880 1.44114 1.02022 1.01690 1.85820 1.19622 0.98380 0.86652 1.34248 0.90678 1.25832 0.98562 1.01937 0.98973 1.70302 1.19707 1.26992 1.41457 0.85203 0.78169 0.80217 0.76865 1.18615 1.22145 1.22294 1.21148 0.96803 0.87054 0.93102 1.23256 0.85365 0.97934 0.96187 1.87970 1.30902 1.87750 1.24599 1.22690 0.95997 0.99514 0.84046 1.21155 0.92799 0.88871 0.96262 1.45895 1.17869 1.33664 1.39325 1.21232 0.80760 0.85172 0.83431 1.90697 1.62200 1.58899 1.32730 1.21401 0.96129 0.93146 1.00780 0.88009 1.21524 0.98283 0.93024 1.01476 1.21535 0.96283 0.97453 0.99981 1.21571 0.95422 0.97418 1.01304 1.21554 0.98956 0.93390 1.00593 1.20460 0.91411 0.93250 0.99500 0.92031 1.22158 0.96916 0.99551 0.97562 1.22611 1.03599 0.97252 0.96507 1.23072 0.91716 1.02205 1.03761 0.98433 0.97370 0.96257 0.94751 0.90872 0.92026 0.91116 0.96193 0.90121 0.93137 0.89537 0.94546 0.75277 0.90304 0.92010 0.90371 0.91126 0.92203 0.90568 0.91142 0.91464 0.90026 0.89975 0.91437 0.88664 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.20 10.40 8.61 127.77 1.10 11.50 16 2 N -0.61 -31.22 2.89 -726.93 -2.10 -33.32 16 3 C -0.26 -14.29 9.67 84.03 0.81 -13.48 16 4 H 0.08 3.94 7.85 -2.91 -0.02 3.92 16 5 C -0.06 -3.35 5.12 84.86 0.43 -2.91 16 6 N -0.94 -57.82 10.62 21.65 0.23 -57.59 16 7 Si 0.97 46.00 29.57 68.60 2.03 48.03 16 8 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 9 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 11 C 0.14 5.61 6.11 86.38 0.53 6.14 16 12 C 0.05 1.79 6.28 71.98 0.45 2.24 16 13 O -0.39 -14.27 9.85 -148.98 -1.47 -15.73 16 14 C 0.05 1.54 6.07 71.98 0.44 1.97 16 15 C 0.13 3.89 6.06 86.38 0.52 4.42 16 16 N -0.71 -17.98 5.40 -463.04 -2.50 -20.48 16 17 C 0.51 13.57 6.87 87.66 0.60 14.18 16 18 O -0.57 -19.36 13.18 -3.04 -0.04 -19.40 16 19 C -0.09 -1.79 2.04 -11.54 -0.02 -1.82 16 20 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 21 C -0.11 -1.45 5.10 30.60 0.16 -1.29 16 22 C -0.12 -1.21 5.92 30.60 0.18 -1.03 16 23 C -0.12 -1.32 5.92 30.60 0.18 -1.14 16 24 C -0.11 -1.50 5.04 30.59 0.15 -1.35 16 25 C -0.03 -0.53 1.52 -10.80 -0.02 -0.55 16 26 H 0.06 1.38 7.86 -2.39 -0.02 1.36 16 27 C -0.14 -3.39 4.07 -10.79 -0.04 -3.44 16 28 C -0.16 -4.33 8.32 30.60 0.25 -4.08 16 29 C -0.17 -3.45 9.74 30.60 0.30 -3.15 16 30 H 0.00 -0.16 7.43 -2.38 -0.02 -0.18 16 31 H 0.01 0.44 7.20 -2.39 -0.02 0.42 16 32 H 0.02 0.88 7.85 -2.38 -0.02 0.86 16 33 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.07 2.59 8.03 -2.39 -0.02 2.57 16 35 H 0.06 2.16 7.87 -2.38 -0.02 2.14 16 36 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.41 8.47 7.89 -92.71 -0.73 7.74 16 43 H 0.08 0.92 7.56 -2.39 -0.02 0.90 16 44 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.07 0.93 7.29 -2.39 -0.02 0.91 16 50 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.08 2.14 8.11 -2.39 -0.02 2.13 16 52 H 0.08 2.32 7.91 -2.39 -0.02 2.30 16 53 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 54 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 55 H 0.10 1.77 7.61 -2.39 -0.02 1.75 16 Total: -1.00 -72.12 426.18 2.29 -69.83 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.10 Total: 22.44 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 6.03 Total: 6.22 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -4.37 Total: -111.39 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -1.51 Total: -35.13 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -72.12 2.29 -69.83 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734280702.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.596 kcal (2) G-P(sol) polarization free energy of solvation -72.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds