Wall clock time and date at job start Tue Mar 31 2020 22:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36934 * 120.00107 * 2 1 4 4 H 1.08000 * 119.99896 * 199.63493 * 3 2 1 5 5 C 1.38808 * 120.00138 * 19.63834 * 3 2 1 6 6 N 1.31619 * 119.99918 * 18.61623 * 5 3 2 7 7 Si 1.86801 * 120.00222 * 198.61303 * 5 3 2 8 8 H 1.48501 * 109.46964 * 89.99487 * 7 5 3 9 9 H 1.48496 * 109.47344 * 209.99966 * 7 5 3 10 10 H 1.48506 * 109.46996 * 330.00186 * 7 5 3 11 11 C 1.46504 * 119.99567 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46959 * 270.00054 * 11 2 1 13 13 O 1.42901 * 109.47301 * 65.00491 * 12 11 2 14 14 C 1.42888 * 114.00121 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47387 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47261 * 64.99602 * 15 14 13 17 17 C 1.34773 * 120.00075 * 180.02562 * 16 15 14 18 18 O 1.21282 * 120.00050 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99744 * 180.02562 * 17 16 15 20 20 H 1.08999 * 109.47031 * 24.71462 * 19 17 16 21 21 C 1.53004 * 109.47056 * 264.71624 * 19 17 16 22 22 C 1.52999 * 109.47121 * 180.02562 * 21 19 17 23 23 C 1.52998 * 109.46928 * 59.99964 * 22 21 19 24 24 C 1.52998 * 109.47466 * 300.00154 * 23 22 21 25 25 C 1.52999 * 109.47172 * 59.99996 * 24 23 22 26 26 H 1.08990 * 109.47116 * 60.00608 * 25 24 23 27 27 C 1.52997 * 109.46977 * 180.02562 * 25 24 23 28 28 C 1.53004 * 117.50088 * 9.14461 * 27 25 24 29 29 C 1.53005 * 117.49829 * 300.48550 * 27 25 24 30 30 H 1.09000 * 109.47339 * 272.63396 * 1 2 3 31 31 H 1.09007 * 109.47075 * 32.63144 * 1 2 3 32 32 H 1.09008 * 109.47226 * 152.62686 * 1 2 3 33 33 H 0.96999 * 120.00026 * 180.02562 * 6 5 3 34 34 H 1.09003 * 109.46807 * 150.00110 * 11 2 1 35 35 H 1.08996 * 109.47277 * 30.00374 * 11 2 1 36 36 H 1.08999 * 109.47078 * 305.00162 * 12 11 2 37 37 H 1.09001 * 109.46939 * 185.00530 * 12 11 2 38 38 H 1.09004 * 109.47667 * 59.99983 * 14 13 12 39 39 H 1.09001 * 109.47190 * 299.99823 * 14 13 12 40 40 H 1.09007 * 109.46899 * 304.99843 * 15 14 13 41 41 H 1.08995 * 109.47387 * 185.00056 * 15 14 13 42 42 H 0.97000 * 119.99534 * 0.02562 * 16 15 14 43 43 H 1.09001 * 109.47144 * 300.00354 * 21 19 17 44 44 H 1.09001 * 109.46972 * 60.00174 * 21 19 17 45 45 H 1.09000 * 109.46904 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.47304 * 300.00138 * 22 21 19 47 47 H 1.09000 * 109.47116 * 179.97438 * 23 22 21 48 48 H 1.08999 * 109.47464 * 60.00179 * 23 22 21 49 49 H 1.09001 * 109.46876 * 299.99894 * 24 23 22 50 50 H 1.08997 * 109.47612 * 180.02562 * 24 23 22 51 51 H 1.09007 * 115.55134 * 154.81825 * 27 25 24 52 52 H 1.08996 * 117.49480 * 0.02562 * 28 27 25 53 53 H 1.09007 * 117.49362 * 145.02441 * 28 27 25 54 54 H 1.09000 * 117.49814 * 214.98402 * 29 27 25 55 55 H 1.09000 * 117.49907 * 359.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1825 1.2130 -0.3143 5 6 1.5162 2.3530 0.4040 6 7 0.4135 2.2895 1.1198 7 14 2.2288 4.0140 -0.0681 8 1 1.6558 4.4471 -1.3678 9 1 1.8926 5.0124 0.9785 10 1 3.7046 3.9028 -0.1903 11 6 2.1974 -1.2688 0.0006 12 6 2.4523 -1.7098 1.4433 13 8 1.2058 -1.9927 2.0823 14 6 1.3322 -2.4160 3.4411 15 6 -0.0569 -2.6888 4.0217 16 7 -0.6666 -3.8201 3.3184 17 6 -1.8994 -4.2422 3.6623 18 8 -2.5043 -3.6852 4.5538 19 6 -2.5263 -5.4063 2.9392 20 1 -1.7432 -6.0361 2.5171 21 6 -3.4231 -4.8850 1.8145 22 6 -4.0601 -6.0668 1.0808 23 6 -4.8990 -6.8853 2.0641 24 6 -4.0023 -7.4067 3.1888 25 6 -3.3654 -6.2248 3.9226 26 1 -4.1481 -5.5947 4.3446 27 6 -2.4681 -6.7462 5.0468 28 6 -2.2005 -8.2519 5.0964 29 6 -3.1220 -7.6034 6.1325 30 1 -0.3634 0.0472 1.0266 31 1 -0.3633 0.8655 -0.5542 32 1 -0.3634 -0.9127 -0.4725 33 1 -0.0294 3.1051 1.4018 34 1 3.1498 -1.1387 -0.5133 35 1 1.6083 -2.0286 -0.5130 36 1 2.9641 -0.9123 1.9820 37 1 3.0731 -2.6058 1.4450 38 1 1.8209 -1.6335 4.0217 39 1 1.9295 -3.3268 3.4839 40 1 -0.6823 -1.8045 3.8983 41 1 0.0325 -2.9255 5.0819 42 1 -0.1829 -4.2654 2.6051 43 1 -4.2062 -4.2550 2.2366 44 1 -2.8255 -4.3014 1.1142 45 1 -4.6993 -5.6953 0.2798 46 1 -3.2773 -6.6970 0.6587 47 1 -5.3532 -7.7271 1.5413 48 1 -5.6819 -6.2552 2.4862 49 1 -3.2195 -8.0369 2.7667 50 1 -4.5999 -7.9902 3.8891 51 1 -1.6595 -6.0810 5.3498 52 1 -2.6632 -8.8708 4.3278 53 1 -1.2158 -8.5771 5.4324 54 1 -2.7433 -7.5024 7.1496 55 1 -4.1915 -7.7956 6.0460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734280708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:37 Heat of formation + Delta-G solvation = -77.433459 kcal Electronic energy + Delta-G solvation = -30647.201792 eV Core-core repulsion = 26684.026339 eV Total energy + Delta-G solvation = -3963.175452 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.53163 -39.57645 -38.91029 -37.22728 -37.03399 -35.65992 -33.43441 -32.41864 -31.15477 -30.73872 -29.30847 -27.81494 -25.17587 -24.82755 -24.65509 -23.29691 -23.15998 -22.14374 -21.48684 -21.24816 -20.04176 -18.77044 -18.23768 -17.63273 -17.45379 -16.93667 -16.71963 -16.25098 -16.14600 -15.67315 -15.33650 -15.31494 -15.26445 -14.99868 -14.88051 -14.71957 -14.26236 -14.07208 -13.79816 -13.62761 -13.22299 -13.06429 -13.02764 -12.72335 -12.59107 -12.54611 -12.50794 -12.44178 -12.36141 -12.32562 -12.00917 -11.98476 -11.78331 -11.69572 -11.49999 -11.47894 -11.35255 -10.90380 -10.65345 -10.61496 -10.58334 -10.37440 -10.10521 -8.77626 -7.80273 -5.23068 1.45803 1.48056 1.56127 1.65467 2.22501 2.52873 2.85277 2.93503 3.32444 3.52059 3.69659 3.75838 3.76334 3.96048 4.06496 4.08858 4.12952 4.15763 4.23468 4.28674 4.37846 4.44011 4.47634 4.51710 4.53248 4.58289 4.59984 4.62424 4.67800 4.73295 4.82778 4.87112 4.91409 4.92912 4.96568 5.00338 5.10923 5.17366 5.20492 5.23985 5.26392 5.30187 5.31109 5.34946 5.36457 5.41911 5.45400 5.58296 5.65977 5.78419 6.33319 6.45341 6.58239 7.17117 7.28099 7.92262 8.37060 9.23800 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.002323 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.976954 B =12049.366339 C =12550.991779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.194 3.806 2 N -0.612 5.612 3 C -0.260 4.260 4 H 0.076 0.924 5 C -0.058 4.058 6 N -0.935 5.935 7 Si 0.964 3.036 8 H -0.288 1.288 9 H -0.300 1.300 10 H -0.265 1.265 11 C 0.144 3.856 12 C 0.051 3.949 13 O -0.392 6.392 14 C 0.055 3.945 15 C 0.130 3.870 16 N -0.712 5.712 17 C 0.513 3.487 18 O -0.588 6.588 19 C -0.086 4.086 20 H 0.113 0.887 21 C -0.110 4.110 22 C -0.111 4.111 23 C -0.121 4.121 24 C -0.109 4.109 25 C -0.033 4.033 26 H 0.055 0.945 27 C -0.163 4.163 28 C -0.165 4.165 29 C -0.184 4.184 30 H -0.005 1.005 31 H 0.009 0.991 32 H 0.023 0.977 33 H 0.244 0.756 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.038 0.962 41 H 0.086 0.914 42 H 0.414 0.586 43 H 0.047 0.953 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.051 0.949 49 H 0.084 0.916 50 H 0.073 0.927 51 H 0.077 0.923 52 H 0.118 0.882 53 H 0.096 0.904 54 H 0.088 0.912 55 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 -26.623 3.586 27.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.335 5.335 3 C -0.390 4.390 4 H 0.094 0.906 5 C -0.253 4.253 6 N -0.582 5.582 7 Si 0.793 3.207 8 H -0.215 1.215 9 H -0.228 1.228 10 H -0.190 1.190 11 C 0.018 3.982 12 C -0.028 4.028 13 O -0.312 6.312 14 C -0.022 4.022 15 C 0.006 3.994 16 N -0.364 5.364 17 C 0.301 3.699 18 O -0.468 6.468 19 C -0.107 4.107 20 H 0.131 0.869 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.159 4.159 24 C -0.146 4.146 25 C -0.052 4.052 26 H 0.074 0.926 27 C -0.181 4.181 28 C -0.202 4.202 29 C -0.221 4.221 30 H 0.014 0.986 31 H 0.028 0.972 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.104 0.896 42 H 0.250 0.750 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.100 0.900 48 H 0.070 0.930 49 H 0.102 0.898 50 H 0.092 0.908 51 H 0.095 0.905 52 H 0.136 0.864 53 H 0.114 0.886 54 H 0.107 0.893 55 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.159 -26.075 4.165 26.905 hybrid contribution 0.628 1.805 0.279 1.932 sum -4.531 -24.270 4.444 25.086 Atomic orbital electron populations 1.20309 0.83018 0.95078 0.96778 1.44155 1.02022 1.01719 1.85583 1.19582 0.97011 0.85990 1.36432 0.90602 1.25716 0.99001 1.01589 0.99027 1.70323 1.22254 1.26738 1.38866 0.85304 0.78486 0.80036 0.76873 1.21535 1.22753 1.18951 1.21157 0.96877 0.87058 0.93069 1.23272 0.85335 0.97959 0.96221 1.87966 1.30945 1.87725 1.24565 1.22675 0.95753 0.99599 0.84127 1.21206 0.93029 0.88890 0.96292 1.45954 1.17695 1.33671 1.39037 1.21276 0.80744 0.85107 0.82774 1.90667 1.63096 1.59537 1.33513 1.21328 0.99196 0.93776 0.96441 0.86901 1.21485 0.98328 0.98938 0.96041 1.21508 0.99831 0.95836 0.97692 1.21585 0.97853 0.99971 0.96484 1.21702 0.99344 0.96232 0.97287 1.20439 0.95756 0.96222 0.92823 0.92642 1.22242 1.01864 0.94144 0.99876 1.23234 1.01014 0.93920 1.02026 1.22996 0.99519 1.04562 0.94991 0.98649 0.97202 0.95879 0.94716 0.90800 0.91874 0.96203 0.91092 0.92985 0.90060 0.94385 0.89562 0.74980 0.93436 0.91737 0.91165 0.90084 0.89986 0.93008 0.89771 0.90823 0.90517 0.86428 0.88592 0.89322 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.14 8.64 127.77 1.10 11.24 16 2 N -0.61 -31.00 2.89 -726.92 -2.10 -33.10 16 3 C -0.26 -14.33 9.66 84.03 0.81 -13.52 16 4 H 0.08 3.98 7.88 -2.91 -0.02 3.96 16 5 C -0.06 -3.35 4.96 84.86 0.42 -2.93 16 6 N -0.93 -57.69 10.87 21.65 0.24 -57.45 16 7 Si 0.96 45.99 29.59 68.60 2.03 48.02 16 8 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 9 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 C 0.14 5.56 6.12 86.38 0.53 6.09 16 12 C 0.05 1.77 6.28 71.98 0.45 2.22 16 13 O -0.39 -14.25 9.84 -148.98 -1.47 -15.72 16 14 C 0.06 1.58 6.07 71.98 0.44 2.01 16 15 C 0.13 3.88 6.06 86.38 0.52 4.41 16 16 N -0.71 -18.50 5.50 -463.05 -2.55 -21.05 16 17 C 0.51 14.48 5.55 87.66 0.49 14.97 16 18 O -0.59 -21.90 16.15 -3.04 -0.05 -21.95 16 19 C -0.09 -1.73 2.05 -11.54 -0.02 -1.75 16 20 H 0.11 1.69 8.11 -2.39 -0.02 1.67 16 21 C -0.11 -2.22 5.19 30.60 0.16 -2.06 16 22 C -0.11 -1.55 5.92 30.59 0.18 -1.37 16 23 C -0.12 -1.53 5.92 30.59 0.18 -1.35 16 24 C -0.11 -1.36 3.80 30.59 0.12 -1.24 16 25 C -0.03 -0.64 1.72 -10.79 -0.02 -0.65 16 26 H 0.06 1.38 7.85 -2.39 -0.02 1.37 16 27 C -0.16 -3.08 5.41 -10.79 -0.06 -3.14 16 28 C -0.17 -2.17 9.58 30.62 0.29 -1.87 16 29 C -0.18 -2.96 9.90 30.62 0.30 -2.66 16 30 H 0.00 -0.28 7.56 -2.39 -0.02 -0.30 16 31 H 0.01 0.53 7.10 -2.38 -0.02 0.51 16 32 H 0.02 1.04 7.86 -2.38 -0.02 1.02 16 33 H 0.24 14.74 8.31 -92.71 -0.77 13.96 16 34 H 0.07 2.60 8.03 -2.39 -0.02 2.58 16 35 H 0.06 2.18 7.87 -2.39 -0.02 2.17 16 36 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.41 8.67 8.45 -92.71 -0.78 7.89 16 43 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.08 0.82 6.95 -2.39 -0.02 0.80 16 50 H 0.07 0.83 7.07 -2.39 -0.02 0.81 16 51 H 0.08 1.81 7.09 -2.38 -0.02 1.80 16 52 H 0.12 1.14 5.85 -2.39 -0.01 1.13 16 53 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 54 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 55 H 0.10 1.46 7.58 -2.39 -0.02 1.44 16 Total: -1.00 -74.06 426.55 2.06 -72.00 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.06 Total: 20.86 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 5.90 Total: 8.38 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -4.41 Total: -111.60 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -1.52 Total: -37.67 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -74.06 2.06 -72.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734280708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.435 kcal (2) G-P(sol) polarization free energy of solvation -74.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds