Wall clock time and date at job start Tue Mar 31 2020 22:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99985 * 2 1 4 4 C 1.53004 * 109.47612 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.46817 * 300.00445 * 4 3 2 6 6 O 1.21280 * 119.99740 * 239.99205 * 5 4 3 7 7 N 1.34777 * 120.00132 * 59.99714 * 5 4 3 8 8 C 1.46504 * 119.99751 * 179.97438 * 7 5 4 9 9 H 1.08997 * 110.53931 * 327.61127 * 8 7 5 10 10 C 1.54961 * 110.53039 * 90.24223 * 8 7 5 11 11 C 1.54895 * 102.77671 * 156.56394 * 10 8 7 12 12 C 1.54268 * 104.19476 * 322.08719 * 11 10 8 13 13 H 1.08999 * 110.03048 * 264.32059 * 12 11 10 14 14 C 1.53000 * 110.07209 * 142.91973 * 12 11 10 15 15 N 1.46497 * 109.47692 * 67.80245 * 14 12 11 16 16 C 1.36932 * 120.00159 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00120 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99943 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99948 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00016 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47151 * 89.99521 * 20 18 16 22 22 H 1.48499 * 109.46892 * 209.99991 * 20 18 16 23 23 H 1.48506 * 109.46756 * 329.99680 * 20 18 16 24 24 C 1.53869 * 106.60115 * 23.60777 * 12 11 10 25 25 C 1.53001 * 109.46548 * 60.00139 * 4 3 2 26 26 C 1.53002 * 109.46577 * 180.02562 * 25 4 3 27 27 C 1.52997 * 109.47292 * 299.99734 * 26 25 4 28 28 C 1.53000 * 109.46910 * 60.00058 * 27 26 25 29 29 C 1.52997 * 109.47262 * 180.02562 * 4 3 2 30 30 H 1.08994 * 109.47229 * 299.99916 * 1 2 3 31 31 H 1.08999 * 109.47095 * 59.99763 * 1 2 3 32 32 H 1.09006 * 109.47004 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.47053 * 60.00168 * 3 2 1 34 34 H 1.08998 * 109.47414 * 300.00499 * 3 2 1 35 35 H 0.96998 * 120.00042 * 359.97438 * 7 5 4 36 36 H 1.09001 * 110.71970 * 38.25670 * 10 8 7 37 37 H 1.08991 * 110.92569 * 274.97253 * 10 8 7 38 38 H 1.08997 * 110.48689 * 203.40743 * 11 10 8 39 39 H 1.09000 * 110.59637 * 80.82119 * 11 10 8 40 40 H 1.08999 * 109.47331 * 187.81046 * 14 12 11 41 41 H 1.09011 * 109.46709 * 307.80483 * 14 12 11 42 42 H 0.97007 * 119.99558 * 359.97438 * 15 14 12 43 43 H 0.96996 * 119.99715 * 179.97438 * 19 18 16 44 44 H 1.09002 * 110.03268 * 119.28653 * 24 12 11 45 45 H 1.08995 * 110.03391 * 240.66959 * 24 12 11 46 46 H 1.08996 * 109.47019 * 299.99869 * 25 4 3 47 47 H 1.08995 * 109.47276 * 60.00716 * 25 4 3 48 48 H 1.09009 * 109.46718 * 179.97438 * 26 25 4 49 49 H 1.08998 * 109.47529 * 60.00377 * 26 25 4 50 50 H 1.09004 * 109.46988 * 300.00585 * 27 26 25 51 51 H 1.08997 * 109.47562 * 180.02562 * 27 26 25 52 52 H 1.09000 * 109.47191 * 180.02562 * 28 27 26 53 53 H 1.09004 * 109.46864 * 60.00452 * 28 27 26 54 54 H 1.09004 * 109.47097 * 300.00261 * 29 4 3 55 55 H 1.09001 * 109.47245 * 59.99979 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 6 3.9796 0.4371 1.2314 6 8 4.7210 0.9697 2.0299 7 7 3.5531 -0.8235 1.4446 8 6 3.9854 -1.5505 2.6409 9 1 4.9925 -1.2489 2.9285 10 6 2.9944 -1.3138 3.8084 11 6 3.2241 -2.5528 4.7092 12 6 3.4420 -3.7099 3.7125 13 1 2.5049 -4.2414 3.5468 14 6 4.5023 -4.6732 4.2499 15 7 3.9820 -5.3612 5.4340 16 6 4.7596 -6.2773 6.0905 17 1 5.7568 -6.4924 5.7357 18 6 4.2664 -6.9296 7.2122 19 7 3.0514 -6.6671 7.6449 20 14 5.3275 -8.1788 8.1083 21 1 6.1179 -7.4922 9.1614 22 1 4.4589 -9.2084 8.7334 23 1 6.2492 -8.8289 7.1423 24 6 3.9262 -3.0728 2.3982 25 6 3.9874 0.4253 -1.2483 26 6 5.5126 0.3041 -1.2474 27 6 6.1353 1.7016 -1.2471 28 6 5.6833 2.4611 0.0018 29 6 4.1577 2.5825 0.0013 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 2.9600 -1.2494 0.8062 36 1 1.9677 -1.2868 3.4433 37 1 3.2364 -0.3963 4.3445 38 1 2.3471 -2.7424 5.3280 39 1 4.1073 -2.4150 5.3328 40 1 4.7491 -5.4068 3.4825 41 1 5.3983 -4.1137 4.5192 42 1 3.0868 -5.1672 5.7533 43 1 2.7066 -7.1232 8.4285 44 1 4.9170 -3.4492 2.1437 45 1 3.2246 -3.2958 1.5945 46 1 3.5441 -0.5704 -1.2483 47 1 3.6662 0.9661 -2.1385 48 1 5.8345 -0.2374 -2.1370 49 1 5.8336 -0.2369 -0.3573 50 1 5.8143 2.2426 -2.1373 51 1 7.2219 1.6153 -1.2469 52 1 6.1266 3.4569 0.0019 53 1 6.0043 1.9201 0.8920 54 1 3.8364 3.1237 -0.8887 55 1 3.8356 3.1232 0.8913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734474312.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:36 Heat of formation + Delta-G solvation = -123.431277 kcal Electronic energy + Delta-G solvation = -31253.819366 eV Core-core repulsion = 27288.649299 eV Total energy + Delta-G solvation = -3965.170067 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.90332 -39.80937 -38.61808 -37.82780 -36.40037 -34.80159 -33.29187 -32.70460 -31.56463 -30.14834 -28.89379 -27.96524 -26.26180 -26.03849 -24.08369 -23.81994 -23.53166 -21.78960 -21.45129 -20.89281 -20.24462 -19.05436 -17.65335 -17.62134 -17.13872 -16.84249 -16.64990 -16.48637 -15.99731 -15.82821 -15.42424 -15.30852 -15.18052 -14.92525 -14.78237 -14.58368 -14.41647 -14.17484 -13.61759 -13.46860 -13.23262 -13.08773 -12.99055 -12.96452 -12.83472 -12.78101 -12.69700 -12.41762 -12.16452 -12.14707 -12.11721 -11.94413 -11.77013 -11.75059 -11.56776 -11.55008 -11.35407 -11.07122 -11.00069 -10.91784 -10.61249 -10.38699 -9.84351 -8.99003 -7.95349 -5.23691 1.46169 1.48372 1.56729 1.72545 2.27850 2.55983 2.74796 3.37805 3.57576 3.61581 3.64601 3.69341 3.84651 3.91030 4.04713 4.16595 4.20763 4.28563 4.36557 4.42171 4.48829 4.49376 4.51471 4.54924 4.59551 4.61236 4.63266 4.65437 4.67648 4.71021 4.75487 4.77429 4.90970 4.93580 4.97222 5.03641 5.05072 5.09473 5.14183 5.15619 5.25278 5.27122 5.31273 5.37875 5.40045 5.40775 5.47667 5.54340 5.60240 5.77435 6.18189 6.27463 6.74608 7.33551 7.43150 8.10469 8.34451 9.28410 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.002315 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.554773 B =12094.429606 C =12817.960703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.404 6.404 3 C 0.074 3.926 4 C -0.070 4.070 5 C 0.523 3.477 6 O -0.580 6.580 7 N -0.699 5.699 8 C 0.146 3.854 9 H 0.070 0.930 10 C -0.118 4.118 11 C -0.108 4.108 12 C -0.086 4.086 13 H 0.073 0.927 14 C 0.158 3.842 15 N -0.744 5.744 16 C -0.246 4.246 17 H 0.073 0.927 18 C -0.076 4.076 19 N -0.970 5.970 20 Si 0.974 3.026 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.269 1.269 24 C -0.107 4.107 25 C -0.096 4.096 26 C -0.125 4.125 27 C -0.115 4.115 28 C -0.134 4.134 29 C -0.089 4.089 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.415 0.585 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.021 0.979 41 H 0.014 0.986 42 H 0.375 0.625 43 H 0.251 0.749 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.096 0.904 48 H 0.078 0.922 49 H 0.034 0.966 50 H 0.080 0.920 51 H 0.056 0.944 52 H 0.065 0.935 53 H 0.058 0.942 54 H 0.096 0.904 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.929 20.996 -25.705 33.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.323 6.323 3 C -0.002 4.002 4 C -0.073 4.073 5 C 0.310 3.690 6 O -0.460 6.460 7 N -0.352 5.352 8 C 0.040 3.960 9 H 0.088 0.912 10 C -0.156 4.156 11 C -0.146 4.146 12 C -0.105 4.105 13 H 0.092 0.908 14 C 0.031 3.969 15 N -0.386 5.386 16 C -0.378 4.378 17 H 0.091 0.909 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.803 3.197 21 H -0.215 1.215 22 H -0.220 1.220 23 H -0.194 1.194 24 C -0.146 4.146 25 C -0.134 4.134 26 C -0.162 4.162 27 C -0.153 4.153 28 C -0.171 4.171 29 C -0.127 4.127 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.254 0.746 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.039 0.961 41 H 0.032 0.968 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.110 0.890 46 H 0.094 0.906 47 H 0.114 0.886 48 H 0.097 0.903 49 H 0.053 0.947 50 H 0.098 0.902 51 H 0.075 0.925 52 H 0.084 0.916 53 H 0.077 0.923 54 H 0.114 0.886 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.144 21.076 -25.149 32.963 hybrid contribution -0.182 -0.762 1.243 1.469 sum -3.326 20.314 -23.906 31.547 Atomic orbital electron populations 1.22871 0.79238 1.03785 1.00699 1.87671 1.21378 1.27742 1.95550 1.22535 0.90358 0.85353 1.02000 1.20974 0.95219 0.97317 0.93800 1.20880 0.79098 0.81773 0.87210 1.90620 1.38086 1.68531 1.48795 1.46103 1.50051 1.14393 1.24643 1.21636 0.97731 0.91465 0.85126 0.91197 1.22745 0.99891 0.96997 0.96009 1.22216 1.00997 0.94211 0.97198 1.21757 0.98508 0.95403 0.94821 0.90840 1.20959 0.94993 0.92851 0.88048 1.42561 1.16895 1.47978 1.31200 1.19648 0.97247 1.14266 1.06640 0.90891 1.25574 0.98143 1.03127 1.00017 1.69817 1.17698 1.47412 1.27128 0.85135 0.77655 0.78455 0.78496 1.21510 1.21951 1.19419 1.22267 1.02684 0.92622 0.96994 1.21535 0.95326 1.00861 0.95675 1.21590 0.95684 0.97495 1.01467 1.21527 0.99907 0.95611 0.98217 1.21736 0.95563 1.00739 0.99108 1.21319 0.95560 0.93005 1.02771 0.94227 0.92373 0.88734 0.93542 0.89406 0.74553 0.90254 0.92728 0.92398 0.93261 0.96120 0.96836 0.79341 0.93978 0.90801 0.89030 0.90641 0.88596 0.90319 0.94664 0.90167 0.92517 0.91621 0.92305 0.88578 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.40 -5.32 7.53 -148.98 -1.12 -6.44 16 3 C 0.07 0.91 4.79 71.98 0.35 1.26 16 4 C -0.07 -1.09 0.52 -52.93 -0.03 -1.12 16 5 C 0.52 12.36 4.96 87.66 0.43 12.79 16 6 O -0.58 -18.39 13.30 -3.03 -0.04 -18.43 16 7 N -0.70 -15.34 4.70 -437.33 -2.05 -17.39 16 8 C 0.15 3.84 3.22 46.09 0.15 3.98 16 9 H 0.07 2.18 7.56 -2.39 -0.02 2.17 16 10 C -0.12 -3.28 6.58 31.91 0.21 -3.07 16 11 C -0.11 -3.59 6.09 31.67 0.19 -3.40 16 12 C -0.09 -2.79 2.96 -10.07 -0.03 -2.82 16 13 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 14 C 0.16 6.55 5.32 86.38 0.46 7.01 16 15 N -0.74 -39.15 5.45 -343.45 -1.87 -41.02 16 16 C -0.25 -14.23 9.99 84.04 0.84 -13.39 16 17 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 18 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 19 N -0.97 -60.62 13.06 21.65 0.28 -60.33 16 20 Si 0.97 47.24 29.55 68.60 2.03 49.27 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 C -0.11 -2.70 6.19 31.32 0.19 -2.51 16 25 C -0.10 -1.20 4.49 30.60 0.14 -1.06 16 26 C -0.12 -1.89 5.70 30.59 0.17 -1.71 16 27 C -0.12 -1.66 5.92 30.59 0.18 -1.48 16 28 C -0.13 -2.43 5.63 30.61 0.17 -2.26 16 29 C -0.09 -1.35 4.38 30.61 0.13 -1.21 16 30 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.41 7.62 5.75 -92.71 -0.53 7.09 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.05 1.85 7.76 -2.39 -0.02 1.83 16 40 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.01 0.59 8.01 -2.38 -0.02 0.57 16 42 H 0.37 20.79 7.55 -92.70 -0.70 20.09 16 43 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.07 1.87 7.67 -2.39 -0.02 1.85 16 45 H 0.09 1.88 7.73 -2.39 -0.02 1.86 16 46 H 0.07 0.96 7.10 -2.39 -0.02 0.94 16 47 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 49 H 0.03 0.73 7.22 -2.39 -0.02 0.71 16 50 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 51 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 53 H 0.06 1.52 5.51 -2.38 -0.01 1.51 16 54 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 55 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 Total: -1.00 -71.31 414.52 2.13 -69.18 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -0.38 Total: 36.68 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 5.28 Total: -11.51 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -3.64 Total: -118.74 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -1.16 Total: -24.87 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -71.31 2.13 -69.18 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734474312.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.247 kcal (2) G-P(sol) polarization free energy of solvation -71.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds