Wall clock time and date at job start Tue Mar 31 2020 22:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00133 * 2 1 4 4 C 1.52999 * 109.47104 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47024 * 300.00111 * 4 3 2 6 6 O 1.21287 * 120.00013 * 240.00404 * 5 4 3 7 7 N 1.34773 * 120.00462 * 59.99582 * 5 4 3 8 8 C 1.46504 * 120.00372 * 180.02562 * 7 5 4 9 9 H 1.08999 * 110.43348 * 32.46088 * 8 7 5 10 10 C 1.54888 * 110.48478 * 269.77867 * 8 7 5 11 11 C 1.54888 * 102.74928 * 203.37942 * 10 8 7 12 12 C 1.54259 * 104.19544 * 37.94077 * 11 10 8 13 13 H 1.09008 * 110.07356 * 95.69737 * 12 11 10 14 14 C 1.53004 * 110.03578 * 217.10740 * 12 11 10 15 15 N 1.46504 * 109.46932 * 292.17092 * 14 12 11 16 16 C 1.36934 * 119.99567 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00537 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99798 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00134 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00229 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 299.99987 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00079 * 20 18 16 24 24 C 1.53874 * 106.59928 * 336.39367 * 12 11 10 25 25 C 1.52998 * 109.47271 * 59.99928 * 4 3 2 26 26 C 1.52999 * 109.47271 * 180.02562 * 25 4 3 27 27 C 1.53000 * 109.46969 * 300.00171 * 26 25 4 28 28 C 1.52998 * 109.47264 * 59.99824 * 27 26 25 29 29 C 1.52999 * 109.47271 * 299.99991 * 28 27 26 30 30 H 1.09002 * 109.46923 * 59.99944 * 1 2 3 31 31 H 1.09003 * 109.47320 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47279 * 300.00161 * 1 2 3 33 33 H 1.09002 * 109.47184 * 59.99759 * 3 2 1 34 34 H 1.09003 * 109.46923 * 300.00260 * 3 2 1 35 35 H 0.97000 * 119.99984 * 0.02562 * 7 5 4 36 36 H 1.08998 * 110.75755 * 321.69589 * 10 8 7 37 37 H 1.09001 * 110.75547 * 85.06350 * 10 8 7 38 38 H 1.09003 * 110.48415 * 279.26482 * 11 10 8 39 39 H 1.08999 * 110.48837 * 156.62306 * 11 10 8 40 40 H 1.08998 * 109.47524 * 172.16737 * 14 12 11 41 41 H 1.08997 * 109.47093 * 52.16637 * 14 12 11 42 42 H 0.97000 * 119.99825 * 359.97438 * 15 14 12 43 43 H 0.97005 * 119.99717 * 0.02562 * 19 18 16 44 44 H 1.09005 * 110.03346 * 119.28655 * 24 12 11 45 45 H 1.09008 * 110.03077 * 240.66550 * 24 12 11 46 46 H 1.09005 * 109.47196 * 300.00362 * 25 4 3 47 47 H 1.09003 * 109.46885 * 59.99672 * 25 4 3 48 48 H 1.09002 * 109.47306 * 179.97438 * 26 25 4 49 49 H 1.09002 * 109.46692 * 60.00011 * 26 25 4 50 50 H 1.09004 * 109.46786 * 299.99620 * 27 26 25 51 51 H 1.08998 * 109.46774 * 180.02562 * 27 26 25 52 52 H 1.08997 * 109.47176 * 179.97438 * 28 27 26 53 53 H 1.09003 * 109.46885 * 60.00319 * 28 27 26 54 54 H 1.09004 * 109.47056 * 300.00374 * 29 28 27 55 55 H 1.08992 * 109.47123 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9806 0.4365 1.2295 6 8 4.7225 0.9689 2.0277 7 7 3.5542 -0.8241 1.4428 8 6 3.9865 -1.5511 2.6390 9 1 4.1268 -0.8630 3.4726 10 6 5.2913 -2.3357 2.3544 11 6 5.2566 -3.4559 3.4235 12 6 3.7687 -3.8543 3.5059 13 1 3.5770 -4.7185 2.8698 14 6 3.3914 -4.1755 4.9534 15 7 4.0767 -5.3993 5.3766 16 6 3.8910 -5.8847 6.6435 17 1 3.2397 -5.3652 7.3309 18 6 4.5399 -7.0445 7.0444 19 7 5.3333 -7.6779 6.2066 20 14 4.2873 -7.7064 8.7729 21 1 5.0849 -8.9464 8.9496 22 1 4.7270 -6.6892 9.7615 23 1 2.8487 -8.0099 8.9813 24 6 2.9611 -2.6433 3.0070 25 6 3.9864 0.4255 -1.2502 26 6 5.5116 0.3041 -1.2505 27 6 6.1344 1.7016 -1.2501 28 6 5.6834 2.4607 -0.0006 29 6 4.1583 2.5821 -0.0003 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 2.9610 -1.2500 0.8043 36 1 5.2761 -2.7594 1.3503 37 1 6.1638 -1.6971 2.4922 38 1 5.6038 -3.0768 4.3847 39 1 5.8619 -4.3050 3.1061 40 1 2.3133 -4.3197 5.0246 41 1 3.6908 -3.3497 5.5987 42 1 4.6619 -5.8656 4.7594 43 1 5.4648 -7.3339 5.3092 44 1 2.3781 -2.9195 2.1283 45 1 2.2997 -2.2849 3.7959 46 1 3.5430 -0.5703 -1.2502 47 1 3.6644 0.9666 -2.1399 48 1 5.8328 -0.2370 -2.1405 49 1 5.8331 -0.2372 -0.3607 50 1 5.8128 2.2429 -2.1400 51 1 7.2210 1.6151 -1.2508 52 1 6.1275 3.4561 -0.0002 53 1 6.0051 1.9194 0.8891 54 1 3.8367 3.1234 -0.8901 55 1 3.8371 3.1232 0.8896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734474313.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:40 Heat of formation + Delta-G solvation = -124.280352 kcal Electronic energy + Delta-G solvation = -31320.093174 eV Core-core repulsion = 27354.886288 eV Total energy + Delta-G solvation = -3965.206886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.94143 -39.89433 -38.65374 -37.88036 -36.69387 -34.93271 -33.32188 -32.65285 -31.58851 -30.11242 -28.86497 -27.98579 -26.09300 -26.03334 -24.30814 -23.92882 -23.55613 -21.87745 -21.45117 -20.95118 -20.29815 -19.30200 -17.70152 -17.64609 -17.16241 -16.96655 -16.86444 -16.51548 -15.87652 -15.72260 -15.68942 -15.38724 -15.18463 -14.98355 -14.87205 -14.83694 -14.49711 -14.27302 -13.69078 -13.49101 -13.20637 -13.10657 -12.96963 -12.89138 -12.83523 -12.69951 -12.61632 -12.47773 -12.18295 -12.12613 -11.96765 -11.87545 -11.84318 -11.78296 -11.60916 -11.52254 -11.20961 -11.09398 -11.02417 -10.92644 -10.63078 -10.38742 -9.91059 -9.12035 -8.42111 -5.35105 1.56914 1.67390 1.69087 1.84009 2.23539 2.70315 2.72317 3.37619 3.50032 3.52508 3.62041 3.65700 3.77977 3.84506 3.97318 4.01799 4.18430 4.26263 4.30952 4.36818 4.40563 4.43688 4.47075 4.51828 4.53161 4.56823 4.59584 4.62694 4.63483 4.64636 4.65675 4.74911 4.83069 4.91292 4.94058 4.95277 4.99679 5.02602 5.06414 5.12753 5.19012 5.23279 5.27973 5.29108 5.37549 5.38653 5.42153 5.56059 5.56999 5.73738 6.16049 6.48291 6.70535 7.08693 7.39344 7.99496 8.10662 9.10311 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018816 B = 0.002325 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.739939 B =12038.780520 C =12795.542229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.405 6.405 3 C 0.074 3.926 4 C -0.070 4.070 5 C 0.523 3.477 6 O -0.580 6.580 7 N -0.700 5.700 8 C 0.146 3.854 9 H 0.069 0.931 10 C -0.118 4.118 11 C -0.109 4.109 12 C -0.087 4.087 13 H 0.074 0.926 14 C 0.164 3.836 15 N -0.755 5.755 16 C -0.337 4.337 17 H 0.064 0.936 18 C -0.105 4.105 19 N -0.974 5.974 20 Si 1.129 2.871 21 H -0.291 1.291 22 H -0.279 1.279 23 H -0.276 1.276 24 C -0.105 4.105 25 C -0.096 4.096 26 C -0.125 4.125 27 C -0.115 4.115 28 C -0.134 4.134 29 C -0.089 4.089 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.040 0.960 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.415 0.585 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.019 0.981 41 H 0.012 0.988 42 H 0.362 0.638 43 H 0.244 0.756 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.077 0.923 49 H 0.035 0.965 50 H 0.080 0.920 51 H 0.055 0.945 52 H 0.065 0.935 53 H 0.058 0.942 54 H 0.096 0.904 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.600 23.262 -22.712 33.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.324 6.324 3 C -0.003 4.003 4 C -0.073 4.073 5 C 0.310 3.690 6 O -0.460 6.460 7 N -0.352 5.352 8 C 0.041 3.959 9 H 0.087 0.913 10 C -0.157 4.157 11 C -0.147 4.147 12 C -0.106 4.106 13 H 0.092 0.908 14 C 0.038 3.962 15 N -0.400 5.400 16 C -0.469 4.469 17 H 0.082 0.918 18 C -0.296 4.296 19 N -0.622 5.622 20 Si 0.953 3.047 21 H -0.217 1.217 22 H -0.205 1.205 23 H -0.202 1.202 24 C -0.144 4.144 25 C -0.134 4.134 26 C -0.163 4.163 27 C -0.153 4.153 28 C -0.171 4.171 29 C -0.126 4.126 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.255 0.745 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.030 0.970 42 H 0.194 0.806 43 H 0.054 0.946 44 H 0.111 0.889 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.114 0.886 48 H 0.096 0.904 49 H 0.054 0.946 50 H 0.099 0.901 51 H 0.074 0.926 52 H 0.084 0.916 53 H 0.077 0.923 54 H 0.115 0.885 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.762 22.395 -20.943 31.629 hybrid contribution -0.348 0.873 -0.920 1.315 sum -8.110 23.268 -21.862 32.942 Atomic orbital electron populations 1.22878 0.79185 1.03811 1.00737 1.87670 1.21440 1.27776 1.95560 1.22538 0.90295 0.85348 1.02072 1.20974 0.95274 0.97314 0.93725 1.20898 0.79155 0.81617 0.87283 1.90623 1.37900 1.68884 1.48590 1.46100 1.50108 1.14348 1.24666 1.21612 0.93776 0.92598 0.87924 0.91296 1.22745 0.97446 0.96269 0.99208 1.22227 0.95966 0.98052 0.98478 1.21788 0.95314 0.98298 0.95238 0.90803 1.20883 0.94452 0.87308 0.93583 1.42570 1.56050 1.28493 1.12892 1.20410 1.25871 1.09055 0.91552 0.91823 1.27266 0.97271 0.95642 1.09417 1.70992 1.41313 1.42765 1.07166 0.82623 0.76354 0.75543 0.70170 1.21667 1.20529 1.20189 1.22245 0.97058 0.93046 1.02038 1.21533 0.95305 1.00832 0.95704 1.21593 0.95710 0.97521 1.01459 1.21525 0.99881 0.95599 0.98248 1.21725 0.95606 1.00746 0.99063 1.21310 0.95516 0.92979 1.02832 0.92376 0.88701 0.94159 0.93441 0.89366 0.74540 0.90021 0.92543 0.93377 0.92296 0.96310 0.97019 0.80625 0.94563 0.88913 0.90986 0.90719 0.88562 0.90411 0.94621 0.90142 0.92582 0.91591 0.92337 0.88531 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -5.21 7.53 -148.98 -1.12 -6.33 16 3 C 0.07 0.89 4.80 71.98 0.35 1.24 16 4 C -0.07 -1.08 0.52 -52.93 -0.03 -1.11 16 5 C 0.52 12.32 4.96 87.66 0.43 12.75 16 6 O -0.58 -18.35 13.30 -3.05 -0.04 -18.39 16 7 N -0.70 -15.30 4.69 -437.46 -2.05 -17.35 16 8 C 0.15 3.85 3.22 46.06 0.15 4.00 16 9 H 0.07 2.17 7.55 -2.39 -0.02 2.15 16 10 C -0.12 -3.25 6.58 31.88 0.21 -3.04 16 11 C -0.11 -3.61 6.08 31.67 0.19 -3.41 16 12 C -0.09 -2.85 2.96 -10.07 -0.03 -2.88 16 13 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 14 C 0.16 6.93 5.32 86.38 0.46 7.39 16 15 N -0.76 -40.02 5.45 -343.44 -1.87 -41.89 16 16 C -0.34 -19.87 9.99 84.03 0.84 -19.03 16 17 H 0.06 3.67 7.83 -2.91 -0.02 3.64 16 18 C -0.10 -6.30 5.50 84.86 0.47 -5.83 16 19 N -0.97 -62.60 13.70 21.65 0.30 -62.31 16 20 Si 1.13 53.35 29.92 68.60 2.05 55.41 16 21 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 24 C -0.11 -2.68 6.19 31.32 0.19 -2.48 16 25 C -0.10 -1.21 4.49 30.59 0.14 -1.07 16 26 C -0.13 -1.93 5.70 30.59 0.17 -1.75 16 27 C -0.12 -1.68 5.92 30.59 0.18 -1.50 16 28 C -0.13 -2.44 5.63 30.59 0.17 -2.27 16 29 C -0.09 -1.34 4.37 30.59 0.13 -1.20 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.41 7.60 5.75 -92.71 -0.53 7.06 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.05 1.81 7.76 -2.39 -0.02 1.79 16 39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.01 0.52 8.00 -2.39 -0.02 0.50 16 42 H 0.36 19.65 6.38 -92.71 -0.59 19.06 16 43 H 0.24 15.61 6.77 -92.70 -0.63 14.98 16 44 H 0.09 1.92 7.73 -2.38 -0.02 1.90 16 45 H 0.07 1.86 7.67 -2.38 -0.02 1.84 16 46 H 0.07 0.96 7.10 -2.38 -0.02 0.95 16 47 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.03 0.75 7.22 -2.39 -0.02 0.73 16 50 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.06 1.52 5.51 -2.39 -0.01 1.51 16 54 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 55 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 Total: -1.00 -74.37 412.80 2.42 -71.95 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: -0.12 Total: 37.61 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 5.28 Total: -18.69 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -3.63 Total: -121.55 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -1.16 Total: -24.72 kcal Atomic # 14 Polarization: 53.35 SS G_CDS: 2.05 Total: 55.41 kcal Total: -74.37 2.42 -71.95 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734474313.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.330 kcal (2) G-P(sol) polarization free energy of solvation -74.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds