Wall clock time and date at job start Tue Mar 31 2020 22:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00083 * 2 1 4 4 C 1.50702 * 119.99956 * 180.02562 * 2 1 3 5 5 H 1.08994 * 109.46869 * 354.99915 * 4 2 1 6 6 C 1.53000 * 109.47330 * 115.00190 * 4 2 1 7 7 C 1.50695 * 109.47252 * 184.99860 * 6 4 2 8 8 O 1.21277 * 119.99949 * 359.97438 * 7 6 4 9 9 N 1.34781 * 119.99806 * 179.97438 * 7 6 4 10 10 C 1.46507 * 119.99553 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47143 * 324.99880 * 10 9 7 12 12 C 1.53002 * 109.46951 * 85.00026 * 10 9 7 13 13 C 1.52998 * 109.46795 * 204.99872 * 10 9 7 14 14 C 1.53042 * 109.46138 * 300.06911 * 13 10 9 15 15 C 1.53191 * 109.31081 * 178.61427 * 14 13 10 16 16 N 1.46923 * 108.77837 * 54.63480 * 15 14 13 17 17 C 1.36935 * 120.63195 * 126.40686 * 16 15 14 18 18 H 1.07993 * 120.00336 * 331.82318 * 17 16 15 19 19 C 1.38811 * 119.99741 * 151.81118 * 17 16 15 20 20 N 1.31621 * 120.00463 * 343.08198 * 19 17 16 21 21 Si 1.86804 * 119.99834 * 163.08094 * 19 17 16 22 22 H 1.48504 * 109.46980 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47163 * 120.00434 * 21 19 17 24 24 H 1.48508 * 109.47063 * 240.00518 * 21 19 17 25 25 C 1.46932 * 118.73892 * 306.39309 * 16 15 14 26 26 C 1.53037 * 109.45876 * 180.02562 * 13 10 9 27 27 O 1.42899 * 109.46990 * 234.99917 * 4 2 1 28 28 C 1.42899 * 113.99760 * 89.99860 * 27 4 2 29 29 C 1.53005 * 109.47090 * 179.97438 * 28 27 4 30 30 H 1.08003 * 120.00032 * 0.02562 * 1 2 3 31 31 H 1.07994 * 120.00199 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47511 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47313 * 300.00652 * 3 2 1 34 34 H 1.09010 * 109.46689 * 60.00025 * 3 2 1 35 35 H 1.09006 * 109.46690 * 305.00122 * 6 4 2 36 36 H 1.09002 * 109.47345 * 64.99434 * 6 4 2 37 37 H 0.96999 * 119.99940 * 359.97438 * 9 7 6 38 38 H 1.09001 * 109.46307 * 179.97438 * 12 10 9 39 39 H 1.09001 * 109.47348 * 299.99630 * 12 10 9 40 40 H 1.09007 * 109.46957 * 59.99955 * 12 10 9 41 41 H 1.09000 * 109.46119 * 60.02916 * 13 10 9 42 42 H 1.08995 * 109.49656 * 298.56467 * 14 13 10 43 43 H 1.09005 * 109.49429 * 58.66525 * 14 13 10 44 44 H 1.09003 * 109.59052 * 294.84600 * 15 14 13 45 45 H 1.08998 * 109.70217 * 174.49740 * 15 14 13 46 46 H 0.96995 * 119.99973 * 179.97438 * 20 19 17 47 47 H 1.09001 * 109.58032 * 293.82168 * 25 16 15 48 48 H 1.08996 * 109.58566 * 173.39192 * 25 16 15 49 49 H 1.08999 * 109.49645 * 301.33653 * 26 13 10 50 50 H 1.09001 * 109.49726 * 61.40441 * 26 13 10 51 51 H 1.08999 * 109.47079 * 60.00472 * 28 27 4 52 52 H 1.08997 * 109.47506 * 299.99636 * 28 27 4 53 53 H 1.08995 * 109.47413 * 300.00648 * 29 28 27 54 54 H 1.08999 * 109.46638 * 60.00369 * 29 28 27 55 55 H 1.08997 * 109.47346 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3586 -2.1316 0.0886 6 6 2.8465 -1.4414 -1.3080 7 6 3.5009 -2.7978 -1.3625 8 8 3.3558 -3.5784 -0.4458 9 7 4.2475 -3.1433 -2.4301 10 6 4.8832 -4.4622 -2.4833 11 1 5.1923 -4.7573 -1.4806 12 6 3.8879 -5.4863 -3.0323 13 6 6.1086 -4.4011 -3.3975 14 6 5.6745 -3.9851 -4.8048 15 6 6.9080 -3.8914 -5.7085 16 7 7.6328 -5.1682 -5.6533 17 6 7.9433 -5.8445 -6.8027 18 1 7.3199 -5.7366 -7.6779 19 6 9.0596 -6.6686 -6.8431 20 7 9.9950 -6.5552 -5.9241 21 14 9.2343 -7.9386 -8.2018 22 1 8.0557 -7.8654 -9.1024 23 1 10.4697 -7.6653 -8.9790 24 1 9.3158 -9.2955 -7.6036 25 6 8.0184 -5.7055 -4.3412 26 6 6.7721 -5.7790 -3.4534 27 8 2.9709 -1.3317 1.1030 28 6 2.4138 -1.8775 2.3004 29 6 3.4682 -1.8570 3.4090 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9352 -0.0004 32 1 3.1352 1.1060 0.0005 33 1 1.8001 1.8767 -0.8899 34 1 1.8001 1.8766 0.8901 35 1 2.1657 -1.3322 -2.1522 36 1 3.6117 -0.6666 -1.3557 37 1 4.3633 -2.5191 -3.1635 38 1 4.3611 -6.4674 -3.0723 39 1 3.0149 -5.5299 -2.3811 40 1 3.5788 -5.1912 -4.0351 41 1 6.8177 -3.6718 -3.0059 42 1 4.9845 -4.7269 -5.2069 43 1 5.1809 -3.0142 -4.7612 44 1 7.5565 -3.0877 -5.3595 45 1 6.5979 -3.6912 -6.7340 46 1 10.7748 -7.1313 -5.9521 47 1 8.7574 -5.0497 -3.8807 48 1 8.4387 -6.7036 -4.4643 49 1 7.0599 -6.0853 -2.4477 50 1 6.0713 -6.5037 -3.8680 51 1 2.0981 -2.9049 2.1188 52 1 1.5537 -1.2816 2.6056 53 1 4.3281 -2.4531 3.1036 54 1 3.7843 -0.8298 3.5907 55 1 3.0432 -2.2729 4.3224 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734584081.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:24 Heat of formation + Delta-G solvation = -80.962624 kcal Electronic energy + Delta-G solvation = -30553.203495 eV Core-core repulsion = 26589.875007 eV Total energy + Delta-G solvation = -3963.328488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.18601 -39.88015 -38.97452 -36.74045 -36.07548 -34.43517 -33.06384 -32.42619 -31.49810 -30.99949 -29.99076 -28.21264 -27.14589 -25.58862 -24.47702 -23.82634 -23.65279 -22.16336 -21.19569 -20.13758 -19.76440 -18.61607 -17.97484 -17.83854 -17.14411 -16.67763 -16.60124 -16.14812 -15.68686 -15.64844 -15.42069 -15.28475 -15.06525 -14.78280 -14.60647 -14.41514 -14.12296 -14.07442 -13.94635 -13.66304 -13.38322 -13.15283 -13.03499 -12.96459 -12.88500 -12.77641 -12.61818 -12.58810 -12.46987 -12.42272 -12.12763 -11.95612 -11.92375 -11.76901 -11.64628 -11.58339 -11.17878 -10.94938 -10.78090 -10.52394 -10.44274 -10.05990 -9.99777 -8.65349 -7.85783 -5.30938 1.20563 1.45845 1.48140 1.58221 1.75793 2.26698 2.52112 2.82226 3.28741 3.65291 3.71270 3.84224 3.89877 3.94189 3.95407 4.07914 4.16312 4.23564 4.35546 4.39695 4.44461 4.47738 4.50464 4.55984 4.62539 4.65228 4.74026 4.75218 4.81342 4.85139 4.86986 4.94405 4.95049 4.99033 5.03013 5.05904 5.08865 5.19200 5.19508 5.24543 5.24856 5.29821 5.34721 5.44935 5.59170 5.61060 5.65612 5.68680 5.81605 5.83262 6.36254 6.41350 6.66299 7.16935 7.36646 7.89488 8.40789 9.20504 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023051 B = 0.002108 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.417242 B =13282.423557 C =13727.512377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.156 4.156 3 C -0.112 4.112 4 C 0.140 3.860 5 H 0.058 0.942 6 C -0.132 4.132 7 C 0.512 3.488 8 O -0.576 6.576 9 N -0.716 5.716 10 C 0.159 3.841 11 H 0.064 0.936 12 C -0.155 4.155 13 C -0.074 4.074 14 C -0.114 4.114 15 C 0.139 3.861 16 N -0.610 5.610 17 C -0.257 4.257 18 H 0.068 0.932 19 C -0.054 4.054 20 N -0.937 5.937 21 Si 0.964 3.036 22 H -0.265 1.265 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.178 3.822 26 C -0.122 4.122 27 O -0.386 6.386 28 C 0.062 3.938 29 C -0.146 4.146 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.411 0.589 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.012 0.988 45 H 0.055 0.945 46 H 0.248 0.752 47 H -0.008 1.008 48 H 0.050 0.950 49 H 0.059 0.941 50 H 0.060 0.940 51 H 0.036 0.964 52 H 0.054 0.946 53 H 0.046 0.954 54 H 0.064 0.936 55 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.569 14.934 12.962 28.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.168 4.168 4 C 0.082 3.918 5 H 0.076 0.924 6 C -0.171 4.171 7 C 0.300 3.700 8 O -0.456 6.456 9 N -0.368 5.368 10 C 0.054 3.946 11 H 0.082 0.918 12 C -0.213 4.213 13 C -0.093 4.093 14 C -0.153 4.153 15 C 0.014 3.986 16 N -0.334 5.334 17 C -0.387 4.387 18 H 0.085 0.915 19 C -0.249 4.249 20 N -0.583 5.583 21 Si 0.793 3.207 22 H -0.189 1.189 23 H -0.221 1.221 24 H -0.219 1.219 25 C 0.052 3.948 26 C -0.161 4.161 27 O -0.306 6.306 28 C -0.014 4.014 29 C -0.203 4.203 30 H 0.135 0.865 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.151 0.849 36 H 0.134 0.866 37 H 0.249 0.751 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.030 0.970 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.010 0.990 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.079 0.921 51 H 0.054 0.946 52 H 0.073 0.927 53 H 0.065 0.935 54 H 0.083 0.917 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.341 14.374 13.589 28.373 hybrid contribution 0.686 -0.879 -0.881 1.421 sum -19.654 13.494 12.708 27.016 Atomic orbital electron populations 1.23917 0.94838 1.02938 0.99748 1.22242 0.95742 0.96141 1.01505 1.20733 1.00028 0.93578 1.02487 1.20799 0.90604 0.94221 0.86172 0.92363 1.21862 1.02049 0.94233 0.98984 1.21040 0.78346 0.89485 0.81145 1.90669 1.62376 1.54345 1.38191 1.46108 1.51212 1.17548 1.21982 1.20740 0.92103 0.83109 0.98669 0.91820 1.22147 0.98738 0.99069 1.01309 1.21150 0.95316 0.97391 0.95445 1.21965 0.97688 1.01471 0.94164 1.21084 0.92419 0.86901 0.98229 1.44325 1.65975 1.21015 1.02060 1.19550 1.04943 1.21740 0.92481 0.91461 1.25802 0.94927 1.03642 1.00568 1.70195 1.09348 1.40552 1.38247 0.85248 0.77494 0.78917 0.79048 1.18931 1.22069 1.21883 1.20550 0.92334 0.97662 0.84228 1.22049 0.98306 0.96771 0.99010 1.87877 1.39383 1.83336 1.19982 1.22452 0.96868 0.96801 0.85277 1.21713 0.98713 1.02685 0.97175 0.86538 0.88310 0.92301 0.90232 0.91516 0.84915 0.86622 0.75103 0.91848 0.93382 0.91275 0.91936 0.91787 0.89634 0.97043 0.92661 0.94249 0.99013 0.93109 0.92273 0.92100 0.94566 0.92734 0.93528 0.91687 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 13.95 67.78 0.95 -1.12 16 2 C -0.16 -2.20 5.05 -16.49 -0.08 -2.28 16 3 C -0.11 -1.34 9.69 71.24 0.69 -0.65 16 4 C 0.14 2.62 1.78 29.85 0.05 2.67 16 5 H 0.06 1.22 7.25 -2.39 -0.02 1.20 16 6 C -0.13 -2.14 5.24 29.85 0.16 -1.98 16 7 C 0.51 12.20 7.67 87.65 0.67 12.87 16 8 O -0.58 -18.53 15.08 10.78 0.16 -18.37 16 9 N -0.72 -15.55 5.00 -442.53 -2.21 -17.77 16 10 C 0.16 4.25 2.40 44.99 0.11 4.36 16 11 H 0.06 1.99 7.58 -2.39 -0.02 1.98 16 12 C -0.15 -4.01 8.78 71.98 0.63 -3.38 16 13 C -0.07 -2.24 2.14 -10.77 -0.02 -2.26 16 14 C -0.11 -3.32 4.81 30.67 0.15 -3.17 16 15 C 0.14 5.42 6.52 86.36 0.56 5.98 16 16 N -0.61 -30.14 2.99 -699.09 -2.09 -32.23 16 17 C -0.26 -14.01 9.58 84.03 0.81 -13.21 16 18 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 19 C -0.05 -3.05 4.92 84.86 0.42 -2.63 16 20 N -0.94 -56.00 11.20 21.65 0.24 -55.75 16 21 Si 0.96 45.00 29.59 68.60 2.03 47.03 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 C 0.18 8.61 5.30 86.36 0.46 9.07 16 26 C -0.12 -4.50 4.96 30.67 0.15 -4.35 16 27 O -0.39 -8.97 9.01 -135.18 -1.22 -10.18 16 28 C 0.06 1.27 6.46 71.98 0.46 1.74 16 29 C -0.15 -2.60 10.28 71.98 0.74 -1.86 16 30 H 0.12 1.00 8.05 -2.91 -0.02 0.98 16 31 H 0.10 1.12 7.84 -2.91 -0.02 1.10 16 32 H 0.06 0.82 7.50 -2.39 -0.02 0.80 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.12 1.61 7.66 -2.39 -0.02 1.59 16 37 H 0.41 6.75 6.84 -92.71 -0.63 6.12 16 38 H 0.06 1.73 6.46 -2.39 -0.02 1.71 16 39 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.66 6.46 -2.38 -0.02 1.65 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 1.93 6.51 -2.39 -0.02 1.91 16 43 H 0.09 1.82 6.46 -2.38 -0.02 1.80 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 46 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 47 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 48 H 0.05 2.81 6.06 -2.39 -0.01 2.80 16 49 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 50 H 0.06 2.26 6.51 -2.39 -0.02 2.24 16 51 H 0.04 0.83 8.08 -2.39 -0.02 0.81 16 52 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 53 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 54 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 55 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -70.36 424.83 4.03 -66.34 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.21 Total: 21.13 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 6.90 Total: -0.20 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -4.06 Total: -105.75 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -1.06 Total: -28.55 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -70.36 4.03 -66.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734584081.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.625 kcal (2) G-P(sol) polarization free energy of solvation -70.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds