Wall clock time and date at job start Tue Mar 31 2020 22:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00164 * 2 1 4 4 C 1.50698 * 119.99908 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.47062 * 5.00130 * 4 2 1 6 6 C 1.53002 * 109.47331 * 244.99967 * 4 2 1 7 7 C 1.50699 * 109.47461 * 175.00129 * 6 4 2 8 8 O 1.21284 * 119.99484 * 0.27427 * 7 6 4 9 9 N 1.34774 * 119.99913 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99798 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47262 * 325.00067 * 10 9 7 12 12 C 1.53001 * 109.46937 * 84.99978 * 10 9 7 13 13 C 1.53001 * 109.47383 * 204.99989 * 10 9 7 14 14 C 1.53046 * 109.45759 * 300.06962 * 13 10 9 15 15 C 1.53192 * 109.30963 * 178.60871 * 14 13 10 16 16 N 1.46935 * 108.77312 * 54.63827 * 15 14 13 17 17 C 1.36932 * 120.62823 * 126.41022 * 16 15 14 18 18 H 1.08002 * 120.00093 * 332.60409 * 17 16 15 19 19 C 1.38810 * 120.00015 * 152.60792 * 17 16 15 20 20 N 1.31616 * 120.00373 * 159.36458 * 19 17 16 21 21 Si 1.86802 * 119.99864 * 339.35716 * 19 17 16 22 22 H 1.48501 * 109.46981 * 92.91137 * 21 19 17 23 23 H 1.48492 * 109.47496 * 212.91311 * 21 19 17 24 24 H 1.48508 * 109.47102 * 332.91498 * 21 19 17 25 25 C 1.46921 * 118.73922 * 306.39021 * 16 15 14 26 26 C 1.53035 * 109.46282 * 180.02562 * 13 10 9 27 27 O 1.42897 * 109.47254 * 125.00085 * 4 2 1 28 28 C 1.42906 * 113.99829 * 270.00039 * 27 4 2 29 29 C 1.52994 * 109.47178 * 179.97438 * 28 27 4 30 30 H 1.08005 * 120.00258 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.00211 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47145 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46620 * 300.00340 * 3 2 1 34 34 H 1.09003 * 109.47161 * 59.99686 * 3 2 1 35 35 H 1.08998 * 109.46812 * 54.99649 * 6 4 2 36 36 H 1.09000 * 109.46834 * 295.00332 * 6 4 2 37 37 H 0.96994 * 120.00098 * 359.97438 * 9 7 6 38 38 H 1.09001 * 109.47072 * 59.99973 * 12 10 9 39 39 H 1.09001 * 109.47305 * 180.02562 * 12 10 9 40 40 H 1.08997 * 109.47625 * 300.00151 * 12 10 9 41 41 H 1.09000 * 109.45590 * 60.02643 * 13 10 9 42 42 H 1.08993 * 109.49811 * 298.56512 * 14 13 10 43 43 H 1.09005 * 109.49542 * 58.66525 * 14 13 10 44 44 H 1.08996 * 109.59200 * 294.85031 * 15 14 13 45 45 H 1.09001 * 109.70038 * 174.49184 * 15 14 13 46 46 H 0.97000 * 120.00350 * 180.02562 * 20 19 17 47 47 H 1.09002 * 109.58347 * 293.82052 * 25 16 15 48 48 H 1.08993 * 109.58806 * 173.39906 * 25 16 15 49 49 H 1.09005 * 109.49751 * 301.33768 * 26 13 10 50 50 H 1.09004 * 109.50029 * 61.39927 * 26 13 10 51 51 H 1.08997 * 109.46997 * 299.99946 * 28 27 4 52 52 H 1.08996 * 109.47069 * 59.99593 * 28 27 4 53 53 H 1.09000 * 109.47259 * 179.97438 * 29 28 27 54 54 H 1.08997 * 109.47346 * 300.00018 * 29 28 27 55 55 H 1.09005 * 109.47130 * 59.99870 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3585 -2.1316 -0.0905 6 6 2.8464 -1.4426 1.3067 7 6 3.5009 -2.7990 1.3601 8 8 3.3594 -3.5771 0.4405 9 7 4.2482 -3.1451 2.4269 10 6 4.8840 -4.4640 2.4790 11 1 4.2347 -5.1993 2.0037 12 6 6.2235 -4.4139 1.7414 13 6 5.1197 -4.8592 3.9381 14 6 6.0300 -3.8257 4.6056 15 6 6.2356 -4.2058 6.0753 16 7 6.7385 -5.5848 6.1412 17 6 7.8858 -5.8769 6.8293 18 1 8.6509 -5.1240 6.9478 19 6 8.0653 -7.1407 7.3746 20 7 9.2761 -7.5645 7.6692 21 14 6.5885 -8.2401 7.6905 22 1 6.3650 -9.1188 6.5143 23 1 6.8412 -9.0757 8.8916 24 1 5.3851 -7.3998 7.9163 25 6 5.9869 -6.6444 5.4550 26 6 5.7844 -6.2367 3.9923 27 8 2.9709 -1.3308 -1.1042 28 6 2.4138 -1.8756 -2.3021 29 6 3.4677 -1.8530 -3.4109 30 1 -0.5401 0.9353 0.0004 31 1 -0.5401 -0.9353 0.0004 32 1 3.1351 1.1059 -0.0005 33 1 1.8001 1.8766 -0.8900 34 1 1.8002 1.8767 0.8900 35 1 2.1657 -1.3341 2.1510 36 1 3.6116 -0.6678 1.3551 37 1 4.3652 -2.5210 3.1601 38 1 6.8727 -3.6785 2.2166 39 1 6.6963 -5.3952 1.7797 40 1 6.0556 -4.1323 0.7019 41 1 4.1653 -4.8953 4.4633 42 1 6.9935 -3.8067 4.0965 43 1 5.5669 -2.8407 4.5460 44 1 5.2865 -4.1373 6.6068 45 1 6.9595 -3.5307 6.5317 46 1 9.4016 -8.4478 8.0499 47 1 5.0174 -6.7747 5.9359 48 1 6.5476 -7.5779 5.4998 49 1 5.1466 -6.9681 3.4959 50 1 6.7501 -6.1947 3.4884 51 1 2.0980 -2.9030 -2.1214 52 1 1.5537 -1.2794 -2.6067 53 1 3.0430 -2.2689 -4.3245 54 1 3.7832 -0.8254 -3.5915 55 1 4.3282 -2.4490 -3.1065 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734584087.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:29 Heat of formation + Delta-G solvation = -77.423925 kcal Electronic energy + Delta-G solvation = -30652.913704 eV Core-core repulsion = 26689.738666 eV Total energy + Delta-G solvation = -3963.175039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.20958 -39.97923 -39.04946 -36.85476 -36.07795 -34.48274 -33.24089 -32.49676 -31.86917 -31.19550 -30.07028 -28.21725 -27.11714 -25.52176 -24.71729 -23.96052 -23.65486 -22.35224 -21.24436 -20.21048 -19.76851 -18.69624 -18.01658 -17.83325 -17.40999 -16.81835 -16.59594 -16.11964 -15.93738 -15.69648 -15.50439 -15.14082 -15.12841 -14.97515 -14.73100 -14.49793 -14.30427 -14.06321 -13.94519 -13.89589 -13.56763 -13.37493 -13.24935 -13.13717 -12.94320 -12.77857 -12.61225 -12.52179 -12.46864 -12.31977 -12.16125 -12.00936 -11.95674 -11.77189 -11.70014 -11.50925 -11.22286 -11.03506 -10.79956 -10.65990 -10.44471 -10.06963 -10.00084 -8.89949 -8.15294 -5.45760 1.20113 1.30202 1.40897 1.49888 1.75556 2.25558 2.42425 2.81799 3.07579 3.38860 3.64872 3.77209 3.85116 3.93614 3.94671 3.97439 4.15541 4.22764 4.31923 4.35318 4.38071 4.43615 4.49363 4.50598 4.55950 4.58165 4.58784 4.73321 4.73779 4.79035 4.84241 4.86813 4.91326 4.94593 4.98418 5.02728 5.03512 5.08354 5.12152 5.16593 5.18957 5.21333 5.24262 5.29115 5.32712 5.59298 5.65099 5.67333 5.82767 5.89495 6.14627 6.35672 6.65907 6.95019 7.36539 7.65822 8.06333 9.04729 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.002207 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.545083 B =12681.101421 C =13084.825128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.156 4.156 3 C -0.111 4.111 4 C 0.140 3.860 5 H 0.058 0.942 6 C -0.132 4.132 7 C 0.512 3.488 8 O -0.576 6.576 9 N -0.715 5.715 10 C 0.159 3.841 11 H 0.071 0.929 12 C -0.157 4.157 13 C -0.075 4.075 14 C -0.120 4.120 15 C 0.141 3.859 16 N -0.620 5.620 17 C -0.243 4.243 18 H 0.052 0.948 19 C -0.039 4.039 20 N -0.959 5.959 21 Si 0.946 3.054 22 H -0.277 1.277 23 H -0.313 1.313 24 H -0.260 1.260 25 C 0.120 3.880 26 C -0.122 4.122 27 O -0.385 6.385 28 C 0.063 3.937 29 C -0.145 4.145 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.132 0.868 36 H 0.117 0.883 37 H 0.412 0.588 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.090 0.910 44 H 0.036 0.964 45 H 0.054 0.946 46 H 0.260 0.740 47 H 0.032 0.968 48 H 0.045 0.955 49 H 0.074 0.926 50 H 0.060 0.940 51 H 0.036 0.964 52 H 0.053 0.947 53 H 0.086 0.914 54 H 0.064 0.936 55 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.739 18.038 -18.157 32.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.168 4.168 4 C 0.082 3.918 5 H 0.076 0.924 6 C -0.171 4.171 7 C 0.300 3.700 8 O -0.455 6.455 9 N -0.368 5.368 10 C 0.054 3.946 11 H 0.089 0.911 12 C -0.216 4.216 13 C -0.094 4.094 14 C -0.158 4.158 15 C 0.017 3.983 16 N -0.345 5.345 17 C -0.373 4.373 18 H 0.070 0.930 19 C -0.233 4.233 20 N -0.605 5.605 21 Si 0.776 3.224 22 H -0.204 1.204 23 H -0.243 1.243 24 H -0.185 1.185 25 C -0.004 4.004 26 C -0.161 4.161 27 O -0.305 6.305 28 C -0.014 4.014 29 C -0.203 4.203 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.150 0.850 36 H 0.135 0.865 37 H 0.250 0.750 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.109 0.891 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.050 0.950 48 H 0.063 0.937 49 H 0.092 0.908 50 H 0.079 0.921 51 H 0.054 0.946 52 H 0.072 0.928 53 H 0.104 0.896 54 H 0.083 0.917 55 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.560 17.463 -18.727 32.222 hybrid contribution -0.124 -1.027 0.816 1.318 sum -19.684 16.436 -17.911 31.279 Atomic orbital electron populations 1.23919 0.94895 1.02907 0.99817 1.22248 0.95719 0.96200 1.01444 1.20730 1.00064 0.93550 1.02464 1.20797 0.90627 0.94157 0.86241 0.92428 1.21859 1.02078 0.94318 0.98887 1.21020 0.78127 0.89481 0.81344 1.90676 1.62874 1.54231 1.37720 1.46084 1.51005 1.17658 1.22093 1.20732 0.93693 0.84875 0.95253 0.91106 1.22165 0.97196 1.02594 0.99603 1.21191 0.99242 0.95010 0.93997 1.22001 0.99617 0.98369 0.95844 1.21136 0.97257 0.84358 0.95555 1.44500 1.26933 1.04553 1.58527 1.18877 0.93583 0.98033 1.26828 0.93002 1.25907 0.98414 0.99385 0.99594 1.69968 1.22117 1.19619 1.48828 0.85912 0.81491 0.78753 0.76253 1.20411 1.24263 1.18460 1.21368 0.94551 0.91712 0.92814 1.21974 1.00840 0.97010 0.96295 1.87874 1.39314 1.83367 1.19905 1.22446 0.96862 0.96795 0.85290 1.21709 0.98716 1.02686 0.97141 0.86598 0.88351 0.92197 0.91561 0.90262 0.85013 0.86502 0.75029 0.91720 0.91857 0.93722 0.90234 0.92406 0.89140 0.94618 0.92698 0.93096 0.95016 0.93653 0.90774 0.92117 0.94566 0.92839 0.89562 0.91679 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 13.95 67.78 0.95 -1.04 16 2 C -0.16 -2.07 5.05 -16.49 -0.08 -2.15 16 3 C -0.11 -1.23 9.69 71.24 0.69 -0.54 16 4 C 0.14 2.46 1.78 29.85 0.05 2.51 16 5 H 0.06 1.15 7.25 -2.39 -0.02 1.13 16 6 C -0.13 -1.95 5.24 29.85 0.16 -1.79 16 7 C 0.51 11.24 7.68 87.66 0.67 11.91 16 8 O -0.58 -17.47 15.08 10.87 0.16 -17.30 16 9 N -0.72 -13.83 5.00 -442.53 -2.21 -16.04 16 10 C 0.16 3.82 2.40 44.99 0.11 3.93 16 11 H 0.07 1.93 7.58 -2.39 -0.02 1.91 16 12 C -0.16 -4.02 8.78 71.98 0.63 -3.39 16 13 C -0.08 -1.95 2.14 -10.77 -0.02 -1.97 16 14 C -0.12 -3.16 4.81 30.67 0.15 -3.01 16 15 C 0.14 4.97 6.52 86.36 0.56 5.54 16 16 N -0.62 -28.23 2.77 -699.10 -1.94 -30.17 16 17 C -0.24 -13.68 10.03 84.03 0.84 -12.84 16 18 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 19 C -0.04 -2.26 5.23 84.86 0.44 -1.82 16 20 N -0.96 -60.65 13.97 21.65 0.30 -60.34 16 21 Si 0.95 46.81 24.34 68.60 1.67 48.48 16 22 H -0.28 -13.04 6.62 99.48 0.66 -12.38 16 23 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 24 H -0.26 -12.21 6.64 99.48 0.66 -11.55 16 25 C 0.12 4.97 4.20 86.36 0.36 5.33 16 26 C -0.12 -3.92 4.96 30.67 0.15 -3.77 16 27 O -0.39 -8.43 9.00 -135.07 -1.22 -9.65 16 28 C 0.06 1.21 6.46 71.98 0.46 1.67 16 29 C -0.15 -2.43 10.28 71.98 0.74 -1.69 16 30 H 0.12 0.95 8.05 -2.91 -0.02 0.93 16 31 H 0.10 1.07 7.84 -2.91 -0.02 1.05 16 32 H 0.06 0.76 7.50 -2.39 -0.02 0.74 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.12 1.43 7.66 -2.39 -0.02 1.41 16 37 H 0.41 5.73 6.84 -92.71 -0.63 5.09 16 38 H 0.06 1.60 6.46 -2.39 -0.02 1.58 16 39 H 0.06 1.69 6.46 -2.39 -0.02 1.67 16 40 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.06 1.71 6.51 -2.39 -0.02 1.69 16 43 H 0.09 1.67 6.46 -2.38 -0.02 1.66 16 44 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 46 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 47 H 0.03 1.26 7.08 -2.39 -0.02 1.25 16 48 H 0.05 2.12 4.50 -2.39 -0.01 2.10 16 49 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 50 H 0.06 2.09 6.51 -2.38 -0.02 2.08 16 51 H 0.04 0.80 8.08 -2.39 -0.02 0.78 16 52 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 54 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 55 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -73.16 418.39 3.77 -69.39 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.12 Total: 18.74 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 6.87 Total: -3.12 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -3.85 Total: -106.55 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -1.05 Total: -26.95 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.67 Total: 48.48 kcal Total: -73.16 3.77 -69.39 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734584087.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.033 kcal (2) G-P(sol) polarization free energy of solvation -73.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds