Wall clock time and date at job start Tue Mar 31 2020 22:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36935 * 120.00600 * 2 1 4 4 H 1.07997 * 120.00262 * 146.82557 * 3 2 1 5 5 C 1.38819 * 119.99401 * 326.82481 * 3 2 1 6 6 N 1.31617 * 120.00304 * 334.39233 * 5 3 2 7 7 Si 1.86803 * 119.99539 * 154.39162 * 5 3 2 8 8 H 1.48496 * 109.47267 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46895 * 120.00033 * 7 5 3 10 10 H 1.48497 * 109.47107 * 240.00020 * 7 5 3 11 11 C 1.46499 * 119.99775 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47211 * 273.62104 * 11 2 1 13 13 H 1.08999 * 109.58748 * 59.25841 * 12 11 2 14 14 C 1.53192 * 109.58191 * 298.97490 * 12 11 2 15 15 C 1.53072 * 109.29393 * 185.72109 * 14 12 11 16 16 C 1.53038 * 109.66189 * 61.15396 * 15 14 12 17 17 C 1.53195 * 109.31235 * 298.70049 * 16 15 14 18 18 N 1.46927 * 109.58541 * 179.54407 * 12 11 2 19 19 C 1.34770 * 120.63334 * 353.37113 * 18 12 11 20 20 O 1.21282 * 120.00036 * 4.75133 * 19 18 12 21 21 C 1.50701 * 119.99793 * 184.75785 * 19 18 12 22 22 O 1.42907 * 109.46876 * 180.02562 * 21 19 18 23 23 C 1.42903 * 113.99722 * 179.97438 * 22 21 19 24 24 C 1.53007 * 109.46795 * 179.97438 * 23 22 21 25 25 C 1.54258 * 110.03131 * 292.16330 * 24 23 22 26 26 C 1.54888 * 104.19598 * 217.10491 * 25 24 23 27 27 C 1.54894 * 102.74642 * 37.94400 * 26 25 24 28 28 C 1.53874 * 110.03093 * 174.99592 * 24 23 22 29 29 H 1.09007 * 109.46350 * 359.84629 * 1 2 3 30 30 H 1.08991 * 109.47242 * 119.85072 * 1 2 3 31 31 H 1.08996 * 109.46812 * 239.85660 * 1 2 3 32 32 H 0.97000 * 119.99628 * 356.56392 * 6 5 3 33 33 H 1.09004 * 109.47473 * 33.61930 * 11 2 1 34 34 H 1.09002 * 109.47597 * 153.61717 * 11 2 1 35 35 H 1.09005 * 109.49946 * 305.52655 * 14 12 11 36 36 H 1.08999 * 109.50005 * 65.62581 * 14 12 11 37 37 H 1.08996 * 109.34896 * 301.12724 * 15 14 12 38 38 H 1.09006 * 109.44480 * 181.23818 * 15 14 12 39 39 H 1.08997 * 109.50281 * 178.74701 * 16 15 14 40 40 H 1.09000 * 109.52266 * 58.66485 * 16 15 14 41 41 H 1.09002 * 109.58614 * 294.85116 * 17 16 15 42 42 H 1.09002 * 109.70615 * 174.49122 * 17 16 15 43 43 H 1.09005 * 109.46893 * 299.99421 * 21 19 18 44 44 H 1.08989 * 109.47577 * 59.99408 * 21 19 18 45 45 H 1.08997 * 109.46757 * 299.99432 * 23 22 21 46 46 H 1.08991 * 109.47116 * 59.99512 * 23 22 21 47 47 H 1.09000 * 110.01424 * 53.61034 * 24 23 22 48 48 H 1.08995 * 110.49071 * 335.78483 * 25 24 23 49 49 H 1.09005 * 110.48562 * 98.42876 * 25 24 23 50 50 H 1.09005 * 110.75765 * 279.63328 * 26 25 24 51 51 H 1.08999 * 110.75839 * 156.26192 * 26 25 24 52 52 H 1.09001 * 110.48445 * 203.37978 * 27 26 25 53 53 H 1.09001 * 110.59396 * 80.79394 * 27 26 25 54 54 H 1.09000 * 110.03428 * 238.56946 * 28 24 23 55 55 H 1.08998 * 110.02949 * 359.95400 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.0978 1.2620 0.5118 5 6 1.6254 2.2900 -0.6579 6 7 0.7926 2.1229 -1.6633 7 14 2.1018 4.0131 -0.1161 8 1 3.0453 3.9294 1.0276 9 1 2.7546 4.7240 -1.2446 10 1 0.8847 4.7557 0.2990 11 6 2.1975 -1.2687 -0.0006 12 6 2.3736 -1.7566 1.4389 13 1 1.3958 -1.8905 1.9015 14 6 3.1817 -0.7270 2.2348 15 6 3.4763 -1.2840 3.6297 16 6 4.3058 -2.5643 3.5083 17 6 3.5074 -3.6132 2.7278 18 7 3.0984 -3.0347 1.4405 19 6 3.3825 -3.6645 0.2834 20 8 3.1164 -3.1366 -0.7756 21 6 4.0307 -5.0248 0.3054 22 8 4.2295 -5.4795 -1.0347 23 6 4.8422 -6.7672 -1.1267 24 6 5.0046 -7.1507 -2.5990 25 6 3.6211 -7.3866 -3.2392 26 6 3.8489 -8.5720 -4.2098 27 6 4.8332 -9.4732 -3.4236 28 6 5.7752 -8.4773 -2.7162 29 1 -0.3632 1.0278 0.0028 30 1 -0.3633 -0.5115 -0.8912 31 1 -0.3633 -0.5160 0.8887 32 1 0.5840 1.2290 -1.9768 33 1 1.6380 -2.0111 -0.5699 34 1 3.1765 -1.1230 -0.4572 35 1 4.1210 -0.5249 1.7200 36 1 2.6087 0.1961 2.3227 37 1 2.5368 -1.5066 4.1355 38 1 4.0324 -0.5443 4.2058 39 1 4.5330 -2.9465 4.5035 40 1 5.2348 -2.3478 2.9810 41 1 2.6229 -3.8978 3.2978 42 1 4.1278 -4.4921 2.5527 43 1 4.9930 -4.9605 0.8133 44 1 3.3863 -5.7259 0.8356 45 1 5.8212 -6.7387 -0.6483 46 1 4.2147 -7.5047 -0.6265 47 1 5.5347 -6.3624 -3.1336 48 1 2.8885 -7.6528 -2.4773 49 1 3.2983 -6.5014 -3.7873 50 1 4.2997 -8.2279 -5.1407 51 1 2.9140 -9.0979 -4.4034 52 1 5.3950 -10.1107 -4.1062 53 1 4.2980 -10.0780 -2.6915 54 1 6.6789 -8.3331 -3.3085 55 1 6.0343 -8.8475 -1.7243 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001750927728.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:15 Heat of formation + Delta-G solvation = -83.362925 kcal Electronic energy + Delta-G solvation = -31005.956940 eV Core-core repulsion = 27042.524367 eV Total energy + Delta-G solvation = -3963.432573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.62411 -39.79841 -38.66219 -37.68076 -37.54445 -34.13240 -33.79112 -31.92113 -31.39152 -29.61716 -29.01005 -28.16334 -27.36073 -25.60470 -25.16300 -23.94650 -22.27851 -21.92583 -21.56563 -20.71381 -19.98535 -19.26092 -18.17767 -17.59392 -17.42827 -16.82574 -16.55001 -16.37215 -16.05944 -15.84280 -15.58483 -15.43784 -15.33952 -15.01417 -14.73836 -14.49860 -14.39967 -14.22858 -14.11568 -13.86848 -13.42234 -13.22698 -13.02287 -12.82920 -12.74454 -12.49146 -12.40958 -12.16193 -12.06485 -11.99137 -11.93079 -11.89729 -11.87742 -11.71142 -11.60936 -11.52145 -11.50605 -11.37415 -11.32873 -10.63721 -10.44887 -10.24278 -9.54654 -8.87535 -8.25381 -5.45229 1.55202 1.58198 1.64685 1.70737 1.80580 2.64394 2.81698 3.22721 3.51944 3.64993 3.67871 3.71854 3.84666 3.88187 3.90700 4.01880 4.10555 4.13351 4.22651 4.31369 4.34894 4.39413 4.40981 4.49100 4.54902 4.58234 4.62098 4.65817 4.66846 4.73467 4.77028 4.83092 4.83464 4.89926 4.97472 5.01910 5.04988 5.07304 5.07689 5.10426 5.16174 5.23096 5.30539 5.32913 5.33386 5.44969 5.46421 5.48469 5.67248 5.89996 6.13198 6.37732 6.47857 7.05314 7.25156 7.78882 8.23122 8.97242 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012772 B = 0.002696 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.756312 B =10385.141982 C =11892.132838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.139 3.861 2 N -0.620 5.620 3 C -0.347 4.347 4 H 0.051 0.949 5 C -0.081 4.081 6 N -0.942 5.942 7 Si 1.121 2.879 8 H -0.270 1.270 9 H -0.294 1.294 10 H -0.283 1.283 11 C 0.178 3.822 12 C 0.142 3.858 13 H 0.063 0.937 14 C -0.111 4.111 15 C -0.115 4.115 16 C -0.128 4.128 17 C 0.099 3.901 18 N -0.605 5.605 19 C 0.494 3.506 20 O -0.566 6.566 21 C 0.055 3.945 22 O -0.400 6.400 23 C 0.065 3.935 24 C -0.096 4.096 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.120 4.120 28 C -0.111 4.111 29 H 0.045 0.955 30 H -0.006 1.006 31 H 0.027 0.973 32 H 0.250 0.750 33 H 0.032 0.968 34 H 0.021 0.979 35 H 0.033 0.967 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.111 0.889 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.039 0.961 50 H 0.063 0.937 51 H 0.070 0.930 52 H 0.076 0.924 53 H 0.074 0.926 54 H 0.071 0.929 55 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.785 -25.836 11.113 30.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.346 5.346 3 C -0.477 4.477 4 H 0.069 0.931 5 C -0.277 4.277 6 N -0.583 5.583 7 Si 0.945 3.055 8 H -0.194 1.194 9 H -0.221 1.221 10 H -0.209 1.209 11 C 0.052 3.948 12 C 0.036 3.964 13 H 0.081 0.919 14 C -0.150 4.150 15 C -0.153 4.153 16 C -0.166 4.166 17 C -0.022 4.022 18 N -0.340 5.340 19 C 0.282 3.718 20 O -0.444 6.444 21 C -0.024 4.024 22 O -0.320 6.320 23 C -0.011 4.011 24 C -0.115 4.115 25 C -0.156 4.156 26 C -0.165 4.165 27 C -0.158 4.158 28 C -0.149 4.149 29 H 0.064 0.936 30 H 0.012 0.988 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.129 0.871 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.058 0.942 50 H 0.082 0.918 51 H 0.089 0.911 52 H 0.095 0.905 53 H 0.092 0.908 54 H 0.090 0.910 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.356 -23.875 10.125 27.924 hybrid contribution -0.062 -1.099 -0.347 1.154 sum 10.295 -24.973 9.778 28.727 Atomic orbital electron populations 1.20848 0.84281 0.99520 0.95969 1.44401 1.01291 1.02393 1.86506 1.20156 1.07062 0.89925 1.30530 0.93130 1.27426 0.99511 1.07386 0.93355 1.70844 1.40159 1.24433 1.22866 0.82799 0.76060 0.71051 0.75563 1.19442 1.22096 1.20902 1.21153 0.94738 0.85899 0.92963 1.21725 0.93936 0.82666 0.98057 0.91910 1.21761 0.98613 0.98137 0.96474 1.21549 1.00910 0.98057 0.94774 1.21911 0.97997 0.94777 1.01888 1.22169 1.00528 0.96998 0.82462 1.48340 1.56650 1.21992 1.07008 1.21195 0.78961 0.88130 0.83477 1.90833 1.53423 1.67311 1.32881 1.22335 1.02035 0.92070 0.85961 1.88029 1.82344 1.36202 1.25389 1.22924 0.97539 0.83343 0.97247 1.21805 0.96834 0.98370 0.94456 1.22361 0.96651 0.97964 0.98667 1.22543 0.99935 0.95994 0.98027 1.22360 0.96976 0.97225 0.99200 1.22111 0.98123 0.92687 1.01965 0.93568 0.98752 0.95464 0.94045 0.94964 0.96034 0.94821 0.92145 0.91058 0.91095 0.87089 0.92454 0.89353 0.86722 0.87451 0.87257 0.91327 0.91295 0.92249 0.91731 0.94171 0.91845 0.91089 0.90516 0.90766 0.91007 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.35 9.09 127.77 1.16 8.51 16 2 N -0.62 -34.56 2.43 -726.93 -1.76 -36.32 16 3 C -0.35 -20.61 8.18 84.04 0.69 -19.92 16 4 H 0.05 3.01 6.92 -2.91 -0.02 2.99 16 5 C -0.08 -4.87 4.60 84.86 0.39 -4.48 16 6 N -0.94 -61.40 12.55 21.65 0.27 -61.13 16 7 Si 1.12 53.52 29.99 68.60 2.06 55.58 16 8 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 9 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 C 0.18 9.01 3.64 86.38 0.31 9.32 16 12 C 0.14 5.39 3.19 44.98 0.14 5.53 16 13 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 14 C -0.11 -4.01 4.23 30.68 0.13 -3.88 16 15 C -0.12 -2.72 5.88 30.63 0.18 -2.54 16 16 C -0.13 -2.14 6.08 30.67 0.19 -1.95 16 17 C 0.10 1.65 6.33 86.36 0.55 2.20 16 18 N -0.60 -17.83 2.97 -795.00 -2.36 -20.19 16 19 C 0.49 16.56 7.69 87.66 0.67 17.23 16 20 O -0.57 -26.53 11.90 16.00 0.19 -26.34 16 21 C 0.06 1.19 4.81 71.24 0.34 1.53 16 22 O -0.40 -11.01 9.73 -129.94 -1.26 -12.28 16 23 C 0.07 1.15 4.99 71.98 0.36 1.51 16 24 C -0.10 -1.81 3.19 -10.07 -0.03 -1.84 16 25 C -0.12 -2.49 6.22 31.67 0.20 -2.30 16 26 C -0.13 -2.02 6.91 31.89 0.22 -1.80 16 27 C -0.12 -1.41 6.83 31.67 0.22 -1.19 16 28 C -0.11 -1.38 6.46 31.32 0.20 -1.18 16 29 H 0.05 2.61 6.31 -2.38 -0.02 2.59 16 30 H -0.01 -0.32 8.07 -2.39 -0.02 -0.34 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.25 16.96 7.02 -92.71 -0.65 16.31 16 33 H 0.03 1.76 6.34 -2.38 -0.02 1.75 16 34 H 0.02 1.23 6.96 -2.39 -0.02 1.21 16 35 H 0.03 1.34 8.14 -2.38 -0.02 1.33 16 36 H 0.06 2.56 6.73 -2.39 -0.02 2.54 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.11 1.08 5.96 -2.39 -0.01 1.06 16 43 H 0.11 1.58 7.50 -2.38 -0.02 1.56 16 44 H 0.11 1.58 8.10 -2.39 -0.02 1.56 16 45 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 46 H 0.07 0.94 8.00 -2.39 -0.02 0.92 16 47 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.06 1.34 7.76 -2.39 -0.02 1.32 16 49 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 50 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 51 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 53 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 54 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 55 H 0.08 0.75 7.67 -2.39 -0.02 0.73 16 Total: -1.00 -83.49 412.81 4.00 -79.49 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.95 Total: 16.45 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 5.92 Total: 4.75 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -3.86 Total: -117.65 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -1.07 Total: -38.61 kcal Atomic # 14 Polarization: 53.52 SS G_CDS: 2.06 Total: 55.58 kcal Total: -83.49 4.00 -79.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001750927728.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.871 kcal (2) G-P(sol) polarization free energy of solvation -83.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds