Wall clock time and date at job start Tue Mar 31 2020 22:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 114.00046 * 2 1 4 4 C 1.52999 * 109.46905 * 150.00134 * 3 2 1 5 5 C 1.53003 * 109.47480 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.46826 * 300.00298 * 5 4 3 7 7 C 1.52996 * 109.47141 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47159 * 174.99728 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 7 6 11 11 C 1.46931 * 120.63086 * 0.02562 * 10 8 7 12 12 C 1.53622 * 108.54424 * 126.36867 * 11 10 8 13 13 C 1.53036 * 109.24613 * 54.85288 * 12 11 10 14 14 C 1.53046 * 109.53689 * 298.51382 * 13 12 11 15 15 H 1.08997 * 109.49431 * 301.40868 * 14 13 12 16 16 C 1.52997 * 109.52033 * 181.33097 * 14 13 12 17 17 N 1.46501 * 109.47252 * 65.14707 * 16 14 13 18 18 C 1.36937 * 120.00054 * 179.97438 * 17 16 14 19 19 H 1.08011 * 120.00178 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00065 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00034 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00082 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47143 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47606 * 119.99808 * 22 20 18 25 25 H 1.48501 * 109.47371 * 240.00202 * 22 20 18 26 26 C 1.46925 * 120.62933 * 180.27723 * 10 8 7 27 27 C 1.52999 * 109.47335 * 59.99613 * 6 5 4 28 28 C 1.52997 * 109.47423 * 270.00446 * 3 2 1 29 29 H 1.09006 * 109.46447 * 299.99662 * 1 2 3 30 30 H 1.08998 * 109.46897 * 59.99429 * 1 2 3 31 31 H 1.08991 * 109.46999 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46853 * 30.00850 * 3 2 1 33 33 H 1.08999 * 109.46806 * 60.00118 * 4 3 2 34 34 H 1.09005 * 109.47435 * 300.00562 * 4 3 2 35 35 H 1.09000 * 109.47504 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.46481 * 59.99686 * 5 4 3 37 37 H 1.09000 * 109.47436 * 299.99708 * 6 5 4 38 38 H 1.09004 * 109.47066 * 54.99931 * 7 6 5 39 39 H 1.08994 * 109.47405 * 294.99761 * 7 6 5 40 40 H 1.09000 * 109.58052 * 246.19939 * 11 10 8 41 41 H 1.08995 * 109.58699 * 6.62138 * 11 10 8 42 42 H 1.09003 * 109.63253 * 294.86246 * 12 11 10 43 43 H 1.08998 * 109.43170 * 174.72646 * 12 11 10 44 44 H 1.08995 * 109.46232 * 178.49380 * 13 12 11 45 45 H 1.08996 * 109.44694 * 58.52287 * 13 12 11 46 46 H 1.09007 * 109.47374 * 185.14667 * 16 14 13 47 47 H 1.09003 * 109.47772 * 305.14192 * 16 14 13 48 48 H 0.96994 * 120.00113 * 359.97438 * 17 16 14 49 49 H 0.97006 * 120.00198 * 179.97438 * 21 20 18 50 50 H 1.08994 * 109.58707 * 353.37218 * 26 10 8 51 51 H 1.09003 * 109.58629 * 113.80427 * 26 10 8 52 52 H 1.09007 * 109.47141 * 60.00277 * 27 6 5 53 53 H 1.09005 * 109.47435 * 179.97438 * 27 6 5 54 54 H 1.09000 * 109.46626 * 299.99607 * 28 3 2 55 55 H 1.09000 * 109.47103 * 60.00065 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3590 1.2632 0.7212 5 6 3.9811 2.6610 0.7219 6 6 4.1884 3.1275 -0.7204 7 6 4.8100 4.5256 -0.7199 8 6 5.1274 4.9348 -2.1351 9 8 4.8803 4.1825 -3.0538 10 7 5.6802 6.1392 -2.3804 11 6 5.9797 7.0639 -1.2786 12 6 7.4563 7.4767 -1.3748 13 6 7.7303 8.0492 -2.7674 14 6 7.4607 6.9756 -3.8243 15 1 8.0958 6.1104 -3.6341 16 6 7.7665 7.5381 -5.2139 17 7 9.1985 7.8290 -5.3187 18 6 9.7094 8.3437 -6.4803 19 1 9.0565 8.5354 -7.3191 20 6 11.0661 8.6199 -6.5794 21 7 11.8616 8.3867 -5.5571 22 14 11.7629 9.3226 -8.1637 23 1 10.6689 9.4917 -9.1535 24 1 12.3882 10.6409 -7.8878 25 1 12.7855 8.3942 -8.7094 26 6 5.9897 6.5547 -3.7553 27 6 2.8398 3.1698 -1.4416 28 6 2.2177 1.7715 -1.4424 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.3451 1.9993 0.5140 33 1 4.0242 0.5693 0.2073 34 1 3.2113 0.9311 1.7489 35 1 4.9422 2.6308 1.2353 36 1 3.3157 3.3545 1.2360 37 1 4.8538 2.4340 -1.2346 38 1 5.7268 4.5154 -0.1303 39 1 4.1065 5.2358 -0.2854 40 1 5.3448 7.9462 -1.3593 41 1 5.7990 6.5671 -0.3254 42 1 8.0914 6.6067 -1.2078 43 1 7.6709 8.2344 -0.6212 44 1 8.7706 8.3680 -2.8307 45 1 7.0772 8.9039 -2.9432 46 1 7.4882 6.8056 -5.9717 47 1 7.1972 8.4547 -5.3683 48 1 9.7847 7.6572 -4.5653 49 1 12.8098 8.5793 -5.6265 50 1 5.8158 5.7219 -4.4366 51 1 5.3557 7.3964 -4.0342 52 1 2.1744 3.8635 -0.9275 53 1 2.9874 3.5026 -2.4691 54 1 2.8830 1.0776 -1.9563 55 1 1.2568 1.8016 -1.9562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752813872.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:56 Heat of formation + Delta-G solvation = -122.067623 kcal Electronic energy + Delta-G solvation = -30089.290325 eV Core-core repulsion = 26124.179390 eV Total energy + Delta-G solvation = -3965.110935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.43996 -40.14823 -38.90670 -37.44208 -36.58564 -34.46043 -32.96022 -32.89849 -31.69771 -31.59664 -28.61579 -27.31921 -26.87415 -25.89099 -24.49843 -23.64243 -23.09566 -22.44264 -21.20511 -20.79184 -19.72076 -19.21716 -18.04106 -17.56229 -17.03775 -16.76049 -16.53235 -16.38708 -16.02800 -15.74724 -15.53370 -15.32935 -15.09414 -14.97411 -14.84716 -14.70080 -14.24036 -14.12841 -13.79505 -13.70321 -13.54243 -13.28835 -13.21598 -12.91330 -12.82763 -12.82286 -12.70974 -12.42850 -12.14085 -12.07696 -12.03030 -11.94711 -11.75450 -11.71981 -11.59241 -11.47922 -11.45695 -11.33250 -11.16407 -10.95301 -10.65209 -10.28834 -9.57670 -9.01884 -7.97466 -5.26296 1.45718 1.46741 1.56918 1.70235 2.05361 2.54525 2.83880 3.35941 3.53895 3.74812 3.78278 3.78874 3.82200 3.92087 3.97098 4.07540 4.15523 4.29374 4.30649 4.34546 4.41972 4.46215 4.47400 4.50994 4.54055 4.57661 4.59233 4.61565 4.67856 4.71247 4.79904 4.80883 4.84502 4.87612 4.89355 4.95948 4.99008 5.06619 5.15907 5.16667 5.20810 5.25041 5.25193 5.30669 5.40840 5.46409 5.50198 5.51477 5.57222 5.59584 6.24824 6.32038 6.51606 7.26199 7.31266 8.06260 8.30778 9.26235 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025366 B = 0.001830 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.561258 B =15295.423391 C =15765.715744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.089 3.911 4 C -0.115 4.115 5 C -0.102 4.102 6 C -0.072 4.072 7 C -0.127 4.127 8 C 0.504 3.496 9 O -0.584 6.584 10 N -0.612 5.612 11 C 0.107 3.893 12 C -0.129 4.129 13 C -0.108 4.108 14 C -0.093 4.093 15 H 0.048 0.952 16 C 0.158 3.842 17 N -0.741 5.741 18 C -0.248 4.248 19 H 0.074 0.926 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.975 3.025 23 H -0.267 1.267 24 H -0.290 1.290 25 H -0.294 1.294 26 C 0.128 3.872 27 C -0.112 4.112 28 C -0.135 4.135 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.056 0.944 43 H 0.098 0.902 44 H 0.044 0.956 45 H 0.069 0.931 46 H 0.010 0.990 47 H 0.028 0.972 48 H 0.374 0.626 49 H 0.252 0.748 50 H 0.067 0.933 51 H 0.080 0.920 52 H 0.075 0.925 53 H 0.056 0.944 54 H 0.046 0.954 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.955 -8.937 20.900 33.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.032 3.968 4 C -0.153 4.153 5 C -0.139 4.139 6 C -0.091 4.091 7 C -0.167 4.167 8 C 0.295 3.705 9 O -0.465 6.465 10 N -0.344 5.344 11 C -0.015 4.015 12 C -0.167 4.167 13 C -0.146 4.146 14 C -0.112 4.112 15 H 0.067 0.933 16 C 0.031 3.969 17 N -0.384 5.384 18 C -0.379 4.379 19 H 0.092 0.908 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.804 3.196 23 H -0.192 1.192 24 H -0.217 1.217 25 H -0.221 1.221 26 C 0.004 3.996 27 C -0.149 4.149 28 C -0.173 4.173 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.134 0.866 39 H 0.143 0.857 40 H 0.106 0.894 41 H 0.137 0.863 42 H 0.075 0.925 43 H 0.116 0.884 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.028 0.972 47 H 0.046 0.954 48 H 0.207 0.793 49 H 0.060 0.940 50 H 0.086 0.914 51 H 0.098 0.902 52 H 0.093 0.907 53 H 0.074 0.926 54 H 0.065 0.935 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.018 -9.429 20.251 32.801 hybrid contribution 1.038 0.318 -1.420 1.787 sum -22.980 -9.111 18.831 31.076 Atomic orbital electron populations 1.22936 0.79983 1.03551 1.00647 1.87882 1.21105 1.29106 1.95183 1.22266 0.95484 0.84000 0.95048 1.21583 0.94764 0.98204 1.00757 1.21529 1.02179 0.95405 0.94831 1.20919 0.96374 0.95043 0.96802 1.21833 1.04410 0.98744 0.91680 1.21508 0.76022 0.80073 0.92940 1.90661 1.54683 1.52761 1.48389 1.48291 1.61211 1.17051 1.07837 1.22144 0.95574 0.93873 0.89888 1.21985 0.96644 1.01533 0.96535 1.21460 1.01259 0.97299 0.94535 1.21462 0.96246 0.98324 0.95194 0.93312 1.20731 0.84953 0.96569 0.94671 1.42526 1.04115 1.77096 1.14697 1.19686 0.92183 1.33154 0.92909 0.90794 1.25570 0.96620 1.03463 1.01046 1.69820 1.04023 1.56108 1.31954 0.85055 0.78078 0.77260 0.79242 1.19173 1.21684 1.22092 1.21320 0.94182 1.00106 0.83991 1.21597 0.96055 0.95995 1.01283 1.21963 1.00581 0.97346 0.97432 0.92713 0.93909 0.88893 0.90623 0.92822 0.90292 0.89812 0.89467 0.93154 0.86569 0.85731 0.89400 0.86273 0.92500 0.88361 0.93763 0.91229 0.97163 0.95419 0.79319 0.93959 0.91422 0.90198 0.90659 0.92559 0.93517 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.52 16 2 O -0.41 -7.65 10.35 -148.98 -1.54 -9.19 16 3 C 0.09 1.37 2.61 30.59 0.08 1.45 16 4 C -0.12 -1.59 5.57 30.60 0.17 -1.42 16 5 C -0.10 -1.04 5.20 30.59 0.16 -0.89 16 6 C -0.07 -1.15 1.84 -10.80 -0.02 -1.17 16 7 C -0.13 -1.70 3.52 29.85 0.11 -1.59 16 8 C 0.50 11.89 7.42 87.66 0.65 12.54 16 9 O -0.58 -19.23 13.38 -3.04 -0.04 -19.27 16 10 N -0.61 -13.66 2.97 -818.13 -2.43 -16.09 16 11 C 0.11 1.54 6.37 86.51 0.55 2.09 16 12 C -0.13 -2.51 6.10 30.82 0.19 -2.32 16 13 C -0.11 -3.09 5.06 30.62 0.15 -2.94 16 14 C -0.09 -3.07 2.37 -10.73 -0.03 -3.10 16 15 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 16 C 0.16 6.56 5.65 86.38 0.49 7.05 16 17 N -0.74 -38.82 5.32 -343.43 -1.83 -40.64 16 18 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 19 H 0.07 4.10 7.83 -2.90 -0.02 4.08 16 20 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 21 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 22 Si 0.97 46.91 29.55 68.60 2.03 48.94 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 26 C 0.13 3.60 5.71 86.35 0.49 4.10 16 27 C -0.11 -2.00 4.94 30.61 0.15 -1.85 16 28 C -0.14 -2.51 5.54 30.61 0.17 -2.34 16 29 H 0.05 0.48 8.09 -2.38 -0.02 0.46 16 30 H 0.04 0.48 7.87 -2.39 -0.02 0.46 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.89 7.79 -2.39 -0.02 0.88 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.05 1.12 7.96 -2.39 -0.02 1.10 16 38 H 0.12 1.09 7.70 -2.38 -0.02 1.08 16 39 H 0.12 0.90 7.93 -2.39 -0.02 0.88 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.12 0.89 5.94 -2.39 -0.01 0.88 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.04 1.58 7.16 -2.39 -0.02 1.56 16 45 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 47 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.37 20.71 6.86 -92.71 -0.64 20.08 16 49 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 50 H 0.07 2.24 7.00 -2.39 -0.02 2.22 16 51 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 52 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 53 H 0.06 1.39 5.95 -2.38 -0.01 1.38 16 54 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 55 H 0.06 1.07 7.87 -2.39 -0.02 1.05 16 Total: -1.00 -75.39 416.54 2.53 -72.86 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.21 Total: 29.22 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 5.85 Total: -6.14 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -3.97 Total: -116.43 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -1.58 Total: -28.46 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -75.39 2.53 -72.86 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752813872.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.204 kcal (2) G-P(sol) polarization free energy of solvation -75.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds