Wall clock time and date at job start Tue Mar 31 2020 22:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 113.99817 * 2 1 4 4 C 1.53004 * 109.46944 * 150.00015 * 3 2 1 5 5 C 1.52997 * 109.46979 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47083 * 299.99927 * 5 4 3 7 7 C 1.52997 * 109.47083 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47337 * 174.99896 * 7 6 5 9 9 O 1.21284 * 120.00119 * 0.02562 * 8 7 6 10 10 N 1.34783 * 120.00028 * 179.97438 * 8 7 6 11 11 C 1.46919 * 120.63144 * 0.02562 * 10 8 7 12 12 C 1.53195 * 108.89273 * 233.55709 * 11 10 8 13 13 C 1.53070 * 109.29524 * 305.57804 * 12 11 10 14 14 C 1.53039 * 109.65812 * 61.15209 * 13 12 11 15 15 H 1.09001 * 109.49731 * 58.65147 * 14 13 12 16 16 C 1.53005 * 109.49929 * 178.74923 * 14 13 12 17 17 N 1.46498 * 109.47023 * 294.83908 * 16 14 13 18 18 C 1.36941 * 120.00218 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99617 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99826 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00168 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99516 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47373 * 90.00213 * 22 20 18 24 24 H 1.48502 * 109.47252 * 210.00198 * 22 20 18 25 25 H 1.48503 * 109.47358 * 330.00008 * 22 20 18 26 26 C 1.46928 * 120.62874 * 180.02562 * 10 8 7 27 27 C 1.53004 * 109.47154 * 60.00180 * 6 5 4 28 28 C 1.52997 * 109.46979 * 299.99884 * 27 6 5 29 29 H 1.09000 * 109.47665 * 59.99938 * 1 2 3 30 30 H 1.08994 * 109.47148 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47129 * 300.00062 * 1 2 3 32 32 H 1.08993 * 109.47166 * 30.00508 * 3 2 1 33 33 H 1.09005 * 109.47112 * 60.00044 * 4 3 2 34 34 H 1.09000 * 109.47212 * 300.00153 * 4 3 2 35 35 H 1.09004 * 109.47015 * 180.02562 * 5 4 3 36 36 H 1.08993 * 109.47184 * 60.00461 * 5 4 3 37 37 H 1.08997 * 109.47333 * 299.99847 * 6 5 4 38 38 H 1.09005 * 109.47293 * 54.99900 * 7 6 5 39 39 H 1.09006 * 109.47471 * 295.00303 * 7 6 5 40 40 H 1.09002 * 109.58751 * 353.41659 * 11 10 8 41 41 H 1.08996 * 109.58750 * 113.69843 * 11 10 8 42 42 H 1.08997 * 109.50046 * 65.38734 * 12 11 10 43 43 H 1.09003 * 109.49733 * 185.48713 * 12 11 10 44 44 H 1.09007 * 109.35101 * 301.12962 * 13 12 11 45 45 H 1.09000 * 109.44413 * 181.23506 * 13 12 11 46 46 H 1.08994 * 109.47050 * 54.83581 * 16 14 13 47 47 H 1.08997 * 109.47189 * 174.84362 * 16 14 13 48 48 H 0.97001 * 119.99831 * 0.02562 * 17 16 14 49 49 H 0.96998 * 119.99371 * 179.97438 * 21 20 18 50 50 H 1.08998 * 109.58787 * 246.16207 * 26 10 8 51 51 H 1.08999 * 109.58470 * 6.58560 * 26 10 8 52 52 H 1.09001 * 109.46626 * 59.99920 * 27 6 5 53 53 H 1.09000 * 109.47212 * 179.97438 * 27 6 5 54 54 H 1.08997 * 109.46911 * 299.99967 * 28 27 6 55 55 H 1.08994 * 109.46997 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.3588 1.2633 0.7213 5 6 3.9808 2.6612 0.7218 6 6 4.1882 3.1277 -0.7205 7 6 4.8107 4.5253 -0.7199 8 6 5.1281 4.9344 -2.1351 9 8 4.8803 4.1824 -3.0539 10 7 5.6864 6.1365 -2.3800 11 6 5.9919 7.0585 -1.2777 12 6 5.3423 8.4146 -1.5708 13 6 5.7950 8.9051 -2.9483 14 6 5.3483 7.9099 -4.0216 15 1 4.2638 7.8053 -3.9920 16 6 5.7754 8.4192 -5.3998 17 7 5.0595 9.6603 -5.7051 18 6 5.2813 10.3042 -6.8932 19 1 5.9837 9.8967 -7.6053 20 6 4.6024 11.4799 -7.1827 21 7 3.7453 11.9755 -6.3156 22 14 4.9045 12.3578 -8.8037 23 1 3.9548 11.8499 -9.8261 24 1 4.7016 13.8175 -8.6214 25 1 6.2972 12.1038 -9.2522 26 6 6.0011 6.5497 -3.7544 27 6 2.8395 3.1699 -1.4418 28 6 2.2175 1.7720 -1.4423 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.3449 1.9994 0.5139 33 1 4.0241 0.5694 0.2074 34 1 3.2111 0.9313 1.7489 35 1 4.9419 2.6310 1.2353 36 1 3.3155 3.3547 1.2360 37 1 4.8536 2.4342 -1.2346 38 1 5.7276 4.5144 -0.1306 39 1 4.1078 5.2360 -0.2852 40 1 5.5952 6.6572 -0.3451 41 1 7.0716 7.1813 -1.1926 42 1 4.2576 8.3076 -1.5633 43 1 5.6427 9.1341 -0.8091 44 1 6.8817 8.9906 -2.9620 45 1 5.3515 9.8802 -3.1500 46 1 6.8487 8.6094 -5.4002 47 1 5.5391 7.6685 -6.1538 48 1 4.4289 10.0264 -5.0654 49 1 3.2713 12.7973 -6.5178 50 1 7.0814 6.6330 -3.8727 51 1 5.6104 5.8127 -4.4560 52 1 2.1741 3.8635 -0.9276 53 1 2.9871 3.5027 -2.4692 54 1 2.8829 1.0785 -1.9564 55 1 1.2565 1.8022 -1.9557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752813873.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:00 Heat of formation + Delta-G solvation = -122.096582 kcal Electronic energy + Delta-G solvation = -30198.131761 eV Core-core repulsion = 26233.019570 eV Total energy + Delta-G solvation = -3965.112191 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.44298 -40.15461 -38.90976 -37.44812 -36.58996 -34.45969 -32.96332 -32.91496 -31.70749 -31.60351 -28.62316 -27.32473 -26.88056 -25.89486 -24.49994 -23.65039 -23.09691 -22.44880 -21.22537 -20.75777 -19.74117 -19.21616 -18.04188 -17.56605 -17.02679 -16.81965 -16.53042 -16.29378 -16.04903 -15.76362 -15.57561 -15.35082 -15.09898 -14.95253 -14.86015 -14.70999 -14.34507 -13.98678 -13.76102 -13.72868 -13.59805 -13.29339 -13.21994 -12.92554 -12.82331 -12.80100 -12.73913 -12.41971 -12.17771 -12.07430 -12.05155 -11.94900 -11.75689 -11.71642 -11.59292 -11.48527 -11.44045 -11.33199 -11.17484 -10.94615 -10.65828 -10.30330 -9.57742 -9.02055 -7.97477 -5.26298 1.45426 1.47523 1.55915 1.69988 2.05538 2.54482 2.82573 3.35684 3.53948 3.74430 3.77567 3.78535 3.81687 3.91973 3.96710 4.07958 4.14804 4.28856 4.30005 4.34182 4.41783 4.46103 4.46548 4.49874 4.53567 4.56388 4.59348 4.61564 4.68042 4.70202 4.79046 4.82074 4.84374 4.87063 4.89273 4.95549 4.98621 5.06315 5.15785 5.16184 5.20644 5.24424 5.25071 5.30525 5.40439 5.46122 5.49908 5.50673 5.56536 5.59309 6.24814 6.30051 6.51582 7.26141 7.31170 8.06178 8.30741 9.26062 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018142 B = 0.001976 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.997864 B =14164.387284 C =14970.464857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.088 3.912 4 C -0.114 4.114 5 C -0.102 4.102 6 C -0.070 4.070 7 C -0.128 4.128 8 C 0.504 3.496 9 O -0.584 6.584 10 N -0.612 5.612 11 C 0.106 3.894 12 C -0.129 4.129 13 C -0.108 4.108 14 C -0.092 4.092 15 H 0.049 0.951 16 C 0.158 3.842 17 N -0.741 5.741 18 C -0.248 4.248 19 H 0.074 0.926 20 C -0.076 4.076 21 N -0.968 5.968 22 Si 0.975 3.025 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.269 1.269 26 C 0.127 3.873 27 C -0.115 4.115 28 C -0.135 4.135 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.044 0.956 46 H 0.028 0.972 47 H 0.011 0.989 48 H 0.375 0.625 49 H 0.252 0.748 50 H 0.079 0.921 51 H 0.067 0.933 52 H 0.067 0.933 53 H 0.053 0.947 54 H 0.051 0.949 55 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.811 -19.914 23.259 30.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C 0.031 3.969 4 C -0.151 4.151 5 C -0.139 4.139 6 C -0.089 4.089 7 C -0.167 4.167 8 C 0.295 3.705 9 O -0.465 6.465 10 N -0.344 5.344 11 C -0.015 4.015 12 C -0.167 4.167 13 C -0.146 4.146 14 C -0.111 4.111 15 H 0.068 0.932 16 C 0.031 3.969 17 N -0.384 5.384 18 C -0.380 4.380 19 H 0.092 0.908 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.804 3.196 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.194 1.194 26 C 0.004 3.996 27 C -0.153 4.153 28 C -0.172 4.172 29 H 0.058 0.942 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.143 0.857 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.028 0.972 48 H 0.207 0.793 49 H 0.061 0.939 50 H 0.098 0.902 51 H 0.086 0.914 52 H 0.086 0.914 53 H 0.071 0.929 54 H 0.070 0.930 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.894 -20.460 22.631 30.522 hybrid contribution -0.682 1.091 -1.611 2.061 sum 0.212 -19.370 21.021 28.585 Atomic orbital electron populations 1.22929 0.80081 1.03588 1.00530 1.87870 1.20985 1.29006 1.95169 1.22275 0.95714 0.83947 0.94960 1.21576 0.94520 0.98266 1.00761 1.21535 1.02346 0.95306 0.94761 1.20911 0.96021 0.95156 0.96806 1.21840 1.04588 0.98548 0.91728 1.21512 0.75671 0.80390 0.92969 1.90661 1.54374 1.53063 1.48375 1.48286 1.61404 1.16938 1.07754 1.22041 1.01551 0.88487 0.89435 1.21916 1.00642 0.97486 0.96621 1.21467 1.01153 0.97555 0.94415 1.21465 0.99406 0.95365 0.94913 0.93248 1.20730 0.94950 0.87267 0.93987 1.42521 1.50571 1.25722 1.19613 1.19645 1.19106 1.03680 0.95523 0.90820 1.25581 0.99739 0.99477 1.01987 1.69813 1.31699 1.23057 1.37340 0.85118 0.77992 0.77278 0.79231 1.21583 1.21875 1.19397 1.21338 0.99907 0.94487 0.83908 1.21605 0.96491 0.95984 1.01181 1.21944 1.00479 0.97272 0.97554 0.94163 0.88703 0.92806 0.91076 0.92332 0.90219 0.89181 0.90000 0.92386 0.85666 0.86620 0.86287 0.89501 0.92488 0.88287 0.91292 0.93740 0.95455 0.97154 0.79305 0.93940 0.90248 0.91407 0.91407 0.92868 0.93036 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.55 16 2 O -0.41 -7.86 10.35 -148.98 -1.54 -9.40 16 3 C 0.09 1.44 2.61 30.60 0.08 1.52 16 4 C -0.11 -1.52 5.57 30.59 0.17 -1.35 16 5 C -0.10 -1.01 5.20 30.59 0.16 -0.85 16 6 C -0.07 -1.10 1.84 -10.79 -0.02 -1.12 16 7 C -0.13 -1.70 3.52 29.85 0.11 -1.59 16 8 C 0.50 11.89 7.42 87.65 0.65 12.54 16 9 O -0.58 -19.22 13.38 -3.04 -0.04 -19.26 16 10 N -0.61 -13.69 2.97 -818.85 -2.44 -16.13 16 11 C 0.11 1.54 6.34 86.36 0.55 2.09 16 12 C -0.13 -2.48 6.09 30.68 0.19 -2.30 16 13 C -0.11 -3.10 5.05 30.63 0.15 -2.94 16 14 C -0.09 -3.04 2.38 -10.70 -0.03 -3.06 16 15 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 16 C 0.16 6.56 5.65 86.38 0.49 7.04 16 17 N -0.74 -38.75 5.32 -343.45 -1.83 -40.58 16 18 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 19 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 21 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 22 Si 0.98 46.86 29.55 68.60 2.03 48.88 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 C 0.13 3.60 5.72 86.37 0.49 4.09 16 27 C -0.12 -2.29 4.95 30.59 0.15 -2.14 16 28 C -0.13 -2.68 5.54 30.59 0.17 -2.51 16 29 H 0.04 0.53 7.87 -2.39 -0.02 0.51 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.55 8.09 -2.39 -0.02 0.53 16 32 H 0.07 0.97 7.79 -2.39 -0.02 0.95 16 33 H 0.06 0.93 8.14 -2.38 -0.02 0.92 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 35 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.06 1.19 7.95 -2.39 -0.02 1.17 16 38 H 0.13 0.91 7.94 -2.38 -0.02 0.89 16 39 H 0.12 1.08 7.69 -2.38 -0.02 1.06 16 40 H 0.12 0.89 5.93 -2.39 -0.01 0.88 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 45 H 0.04 1.58 7.16 -2.39 -0.02 1.57 16 46 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 48 H 0.37 20.67 6.86 -92.71 -0.64 20.03 16 49 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 50 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.07 2.25 7.00 -2.39 -0.02 2.23 16 52 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.05 1.46 5.95 -2.39 -0.01 1.44 16 54 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 55 H 0.05 1.11 7.87 -2.39 -0.02 1.09 16 Total: -1.00 -75.01 416.52 2.52 -72.50 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.21 Total: 29.96 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 5.84 Total: -6.36 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -3.98 Total: -116.33 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -1.58 Total: -28.66 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -75.01 2.52 -72.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752813873.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.599 kcal (2) G-P(sol) polarization free energy of solvation -75.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds