Wall clock time and date at job start Tue Mar 31 2020 22:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00084 * 2 1 4 4 C 1.52998 * 109.47254 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47064 * 185.02781 * 4 3 2 6 6 C 1.50697 * 110.43696 * 304.88074 * 5 4 3 7 7 O 1.21278 * 120.00357 * 109.52393 * 6 5 4 8 8 N 1.34777 * 119.99693 * 289.52350 * 6 5 4 9 9 C 1.46930 * 120.62899 * 4.92168 * 8 6 5 10 10 C 1.53195 * 108.76334 * 126.36155 * 9 8 6 11 11 C 1.53039 * 109.31612 * 54.65116 * 10 9 8 12 12 C 1.53041 * 109.52745 * 298.61904 * 11 10 9 13 13 C 1.46925 * 120.63082 * 184.89482 * 8 6 5 14 14 H 1.09001 * 109.58601 * 113.84956 * 13 8 6 15 15 C 1.52992 * 109.70435 * 353.49342 * 13 8 6 16 16 N 1.46498 * 109.47400 * 66.66461 * 15 13 8 17 17 C 1.36936 * 119.99981 * 184.51806 * 16 15 13 18 18 H 1.07994 * 120.00430 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99672 * 179.97438 * 17 16 15 20 20 N 1.31616 * 120.00520 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99968 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46977 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47230 * 119.99812 * 21 19 17 24 24 H 1.48497 * 109.47192 * 240.00293 * 21 19 17 25 25 C 1.54891 * 110.59821 * 67.49441 * 5 4 3 26 26 C 1.54895 * 102.74960 * 156.67320 * 25 5 4 27 27 C 1.54269 * 104.19373 * 322.06117 * 26 25 5 28 28 C 1.53868 * 106.59920 * 23.60858 * 27 26 25 29 29 H 1.09000 * 109.47074 * 60.00436 * 1 2 3 30 30 H 1.08999 * 109.47158 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46867 * 300.00520 * 1 2 3 32 32 H 1.08994 * 109.47412 * 59.99299 * 3 2 1 33 33 H 1.09010 * 109.46963 * 299.99598 * 3 2 1 34 34 H 1.09001 * 109.47210 * 65.02948 * 4 3 2 35 35 H 1.08996 * 109.46900 * 305.02811 * 4 3 2 36 36 H 1.09000 * 109.58945 * 246.14997 * 9 8 6 37 37 H 1.08999 * 109.59022 * 6.58074 * 9 8 6 38 38 H 1.09005 * 109.50599 * 294.69472 * 10 9 8 39 39 H 1.09002 * 109.48724 * 174.59805 * 10 9 8 40 40 H 1.08996 * 109.46185 * 178.59538 * 11 10 9 41 41 H 1.09004 * 109.45367 * 58.63161 * 11 10 9 42 42 H 1.09001 * 109.49325 * 181.32291 * 12 11 10 43 43 H 1.09000 * 109.49440 * 301.41562 * 12 11 10 44 44 H 1.09003 * 109.47058 * 186.66524 * 15 13 8 45 45 H 1.09001 * 109.46872 * 306.66187 * 15 13 8 46 46 H 0.96996 * 119.99743 * 4.52341 * 16 15 13 47 47 H 0.97001 * 120.00767 * 179.97438 * 20 19 17 48 48 H 1.08999 * 110.75951 * 274.99482 * 25 5 4 49 49 H 1.09005 * 110.75763 * 38.36161 * 25 5 4 50 50 H 1.09002 * 110.48725 * 203.38120 * 26 25 5 51 51 H 1.09002 * 110.59231 * 80.79186 * 26 25 5 52 52 H 1.08997 * 110.02945 * 264.32120 * 27 26 25 53 53 H 1.09004 * 110.06732 * 142.91664 * 27 26 25 54 54 H 1.09007 * 110.02893 * 240.71182 * 28 27 26 55 55 H 1.08997 * 110.07240 * 119.31267 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1574 2.5768 0.1258 6 6 3.6410 3.4845 -0.9607 7 8 2.8846 4.3915 -0.6848 8 7 4.0197 3.2882 -2.2392 9 6 4.8481 2.1313 -2.6054 10 6 4.1550 1.3678 -3.7383 11 6 3.8699 2.3278 -4.8955 12 6 2.9326 3.4397 -4.4186 13 6 3.6116 4.2268 -3.2934 14 1 4.4895 4.7406 -3.6851 15 6 2.6308 5.2516 -2.7201 16 7 3.3233 6.0985 -1.7458 17 6 2.6228 7.0328 -1.0305 18 1 1.5598 7.1450 -1.1844 19 6 3.2789 7.8348 -0.1069 20 7 4.5744 7.6978 0.0810 21 14 2.3235 9.1098 0.8683 22 1 0.8927 9.0648 0.4735 23 1 2.4456 8.8170 2.3190 24 1 2.8725 10.4608 0.5881 25 6 3.8631 3.1804 1.5216 26 6 5.0030 4.2149 1.6939 27 6 6.2341 3.5293 1.0659 28 6 5.6964 2.4879 0.0689 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.8630 0.7237 -0.9325 35 1 3.8514 0.5678 0.8406 36 1 5.8268 2.4742 -2.9410 37 1 4.9643 1.4770 -1.7414 38 1 3.2171 0.9484 -3.3740 39 1 4.8036 0.5631 -4.0846 40 1 3.3992 1.7817 -5.7129 41 1 4.8057 2.7658 -5.2428 42 1 2.7112 4.1100 -5.2492 43 1 2.0064 3.0007 -4.0479 44 1 2.2398 5.8713 -3.5272 45 1 1.8077 4.7319 -2.2297 46 1 4.2780 5.9975 -1.6074 47 1 5.0330 8.2585 0.7261 48 1 2.8903 3.6720 1.5326 49 1 3.9179 2.4130 2.2937 50 1 5.1772 4.4182 2.7506 51 1 4.7675 5.1370 1.1626 52 1 6.8222 3.0363 1.8399 53 1 6.8461 4.2649 0.5439 54 1 6.0237 1.4895 0.3591 55 1 6.0468 2.7176 -0.9373 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752832695.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:45 Heat of formation + Delta-G solvation = -53.294107 kcal Electronic energy + Delta-G solvation = -34006.756962 eV Core-core repulsion = 30044.628270 eV Total energy + Delta-G solvation = -3962.128691 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.07258 -39.38869 -38.54359 -37.72702 -36.08886 -34.10195 -33.54155 -33.00402 -31.47656 -29.53761 -28.83491 -27.63822 -26.70546 -25.85590 -24.28585 -23.73235 -23.50011 -22.20470 -21.24110 -20.97424 -19.54608 -18.65332 -17.48921 -17.31221 -16.99686 -16.75264 -16.61431 -16.32387 -15.94640 -15.79333 -15.44532 -15.33089 -15.18949 -14.95762 -14.73209 -14.53606 -14.12338 -13.91034 -13.74246 -13.63435 -13.45277 -13.09174 -12.95906 -12.84716 -12.72877 -12.58213 -12.21361 -12.18576 -12.16066 -12.02802 -11.99205 -11.84408 -11.78520 -11.72773 -11.59825 -11.54037 -11.29584 -11.23603 -11.07787 -10.77561 -10.64646 -9.59146 -9.31915 -8.44222 -7.76340 -4.92717 1.41586 1.43008 1.51155 2.17689 2.29933 2.63636 2.72512 3.54531 3.56127 3.64601 3.78963 3.87621 3.91260 3.99364 4.09823 4.14380 4.18950 4.27573 4.37240 4.41074 4.43617 4.47713 4.51903 4.54014 4.55871 4.60215 4.61715 4.66877 4.77101 4.79864 4.80160 4.91564 4.93220 4.98769 5.00098 5.06691 5.08123 5.11680 5.12155 5.13118 5.18500 5.24359 5.28606 5.35350 5.41819 5.47746 5.54959 5.58204 5.74109 5.97363 6.13782 6.42779 6.85965 7.50501 7.81658 8.27608 8.52684 9.46859 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009650 B = 0.005315 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.783877 B = 5267.019857 C = 5964.784555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.069 3.931 4 C -0.095 4.095 5 C -0.069 4.069 6 C 0.484 3.516 7 O -0.491 6.491 8 N -0.614 5.614 9 C 0.092 3.908 10 C -0.130 4.130 11 C -0.111 4.111 12 C -0.119 4.119 13 C 0.148 3.852 14 H 0.057 0.943 15 C 0.167 3.833 16 N -0.693 5.693 17 C -0.191 4.191 18 H 0.051 0.949 19 C -0.073 4.073 20 N -0.959 5.959 21 Si 0.950 3.050 22 H -0.279 1.279 23 H -0.302 1.302 24 H -0.296 1.296 25 C -0.094 4.094 26 C -0.131 4.131 27 C -0.113 4.113 28 C -0.112 4.112 29 H 0.038 0.962 30 H 0.109 0.891 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.028 0.972 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.003 0.997 45 H 0.021 0.979 46 H 0.368 0.632 47 H 0.240 0.760 48 H 0.040 0.960 49 H 0.090 0.910 50 H 0.054 0.946 51 H 0.043 0.957 52 H 0.083 0.917 53 H 0.041 0.959 54 H 0.107 0.893 55 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.462 -21.887 -5.753 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.007 4.007 4 C -0.132 4.132 5 C -0.072 4.072 6 C 0.270 3.730 7 O -0.362 6.362 8 N -0.351 5.351 9 C -0.030 4.030 10 C -0.168 4.168 11 C -0.149 4.149 12 C -0.158 4.158 13 C 0.044 3.956 14 H 0.075 0.925 15 C 0.040 3.960 16 N -0.334 5.334 17 C -0.325 4.325 18 H 0.069 0.931 19 C -0.265 4.265 20 N -0.613 5.613 21 Si 0.782 3.218 22 H -0.204 1.204 23 H -0.230 1.230 24 H -0.223 1.223 25 C -0.131 4.131 26 C -0.169 4.169 27 C -0.151 4.151 28 C -0.149 4.149 29 H 0.057 0.943 30 H 0.127 0.873 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.021 0.979 45 H 0.039 0.961 46 H 0.199 0.801 47 H 0.049 0.951 48 H 0.059 0.941 49 H 0.109 0.891 50 H 0.073 0.927 51 H 0.062 0.938 52 H 0.102 0.898 53 H 0.060 0.940 54 H 0.125 0.875 55 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.954 -21.443 -5.555 22.172 hybrid contribution -0.653 1.965 0.926 2.268 sum 0.302 -19.478 -4.628 20.023 Atomic orbital electron populations 1.22898 0.80005 1.03963 1.00130 1.87773 1.20969 1.27815 1.95480 1.22420 0.95036 0.84055 0.99215 1.21674 0.92039 0.94249 1.05208 1.21483 0.97370 0.94369 0.94007 1.20708 0.83629 0.85194 0.83476 1.91140 1.34088 1.28893 1.82058 1.47881 1.54036 1.26867 1.06294 1.22316 0.93684 0.87164 0.99827 1.21938 1.01350 0.98290 0.95206 1.21474 0.99440 0.95882 0.98084 1.21840 0.98834 0.98265 0.96824 1.21263 0.96572 0.89476 0.88302 0.92531 1.20836 0.94894 0.90565 0.89660 1.42216 1.06913 1.39794 1.44467 1.19249 0.91550 1.08073 1.13581 0.93112 1.25080 0.96626 1.02863 1.01917 1.69770 1.08058 1.43700 1.39740 0.85378 0.78108 0.79747 0.78519 1.20397 1.23020 1.22337 1.22326 0.98005 0.97637 0.95158 1.22313 0.95866 0.98919 0.99788 1.22020 0.96866 0.97501 0.98678 1.22497 0.91147 1.00814 1.00429 0.94322 0.87284 0.94127 0.94443 0.95387 0.88592 0.88313 0.91185 0.87475 0.92320 0.88155 0.90064 0.91325 0.90459 0.92600 0.97908 0.96119 0.80059 0.95060 0.94077 0.89146 0.92732 0.93818 0.89809 0.94034 0.87498 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.40 -10.12 10.70 -148.98 -1.59 -11.71 16 3 C 0.07 1.92 5.44 71.98 0.39 2.31 16 4 C -0.09 -2.18 4.29 30.59 0.13 -2.05 16 5 C -0.07 -2.00 0.27 -51.85 -0.01 -2.01 16 6 C 0.48 17.78 4.42 87.66 0.39 18.16 16 7 O -0.49 -23.64 8.93 -3.02 -0.03 -23.67 16 8 N -0.61 -18.87 2.90 -795.04 -2.30 -21.17 16 9 C 0.09 1.90 4.03 86.36 0.35 2.25 16 10 C -0.13 -2.13 6.08 30.67 0.19 -1.94 16 11 C -0.11 -1.96 5.88 30.62 0.18 -1.78 16 12 C -0.12 -2.94 5.37 30.67 0.16 -2.77 16 13 C 0.15 4.94 2.93 44.97 0.13 5.07 16 14 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 15 C 0.17 7.42 4.87 86.38 0.42 7.84 16 16 N -0.69 -37.56 3.19 -343.47 -1.09 -38.66 16 17 C -0.19 -11.57 9.10 84.03 0.77 -10.81 16 18 H 0.05 3.11 7.83 -2.91 -0.02 3.09 16 19 C -0.07 -4.50 5.50 84.86 0.47 -4.03 16 20 N -0.96 -60.82 13.06 21.65 0.28 -60.53 16 21 Si 0.95 50.37 29.55 68.60 2.03 52.39 16 22 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.30 -16.15 7.11 99.48 0.71 -15.44 16 24 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 25 C -0.09 -3.17 4.78 31.89 0.15 -3.02 16 26 C -0.13 -5.04 6.60 31.67 0.21 -4.84 16 27 C -0.11 -3.41 6.80 31.32 0.21 -3.19 16 28 C -0.11 -2.73 4.63 31.32 0.15 -2.58 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 1.15 7.22 -2.39 -0.02 1.13 16 33 H 0.03 0.89 7.34 -2.38 -0.02 0.88 16 34 H 0.10 1.87 5.52 -2.39 -0.01 1.85 16 35 H 0.10 1.92 8.08 -2.39 -0.02 1.90 16 36 H 0.07 1.36 7.85 -2.39 -0.02 1.34 16 37 H 0.11 1.93 3.03 -2.39 -0.01 1.92 16 38 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.02 1.01 6.56 -2.39 -0.02 1.00 16 46 H 0.37 21.26 7.29 -92.71 -0.68 20.59 16 47 H 0.24 14.99 8.31 -92.71 -0.77 14.21 16 48 H 0.04 1.70 7.03 -2.39 -0.02 1.69 16 49 H 0.09 2.46 8.02 -2.38 -0.02 2.45 16 50 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 52 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 53 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 54 H 0.11 1.79 7.84 -2.38 -0.02 1.77 16 55 H 0.08 1.86 5.14 -2.39 -0.01 1.85 16 Total: -1.00 -75.62 400.86 3.00 -72.61 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.18 Total: 32.35 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 5.53 Total: -1.61 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -3.12 Total: -120.36 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -1.62 Total: -35.38 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 2.03 Total: 52.39 kcal Total: -75.62 3.00 -72.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752832695.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.318 kcal (2) G-P(sol) polarization free energy of solvation -75.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds