Wall clock time and date at job start Tue Mar 31 2020 22:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 114.00040 * 2 1 4 4 C 1.53002 * 109.47117 * 184.92674 * 3 2 1 5 5 C 1.52997 * 109.47085 * 184.52007 * 4 3 2 6 6 C 1.50697 * 110.43680 * 294.55677 * 5 4 3 7 7 O 1.21282 * 120.00267 * 114.57428 * 6 5 4 8 8 N 1.34774 * 119.99887 * 294.57340 * 6 5 4 9 9 C 1.46924 * 120.63354 * 5.15809 * 8 6 5 10 10 C 1.53190 * 108.77951 * 233.63214 * 9 8 6 11 11 C 1.53040 * 109.31176 * 305.36219 * 10 9 8 12 12 C 1.53040 * 109.53812 * 61.36413 * 11 10 9 13 13 C 1.46930 * 120.63178 * 185.18066 * 8 6 5 14 14 H 1.09005 * 109.58674 * 246.15664 * 13 8 6 15 15 C 1.52999 * 109.58368 * 6.58408 * 13 8 6 16 16 N 1.46500 * 109.47126 * 287.31487 * 15 13 8 17 17 C 1.36940 * 120.00159 * 185.51509 * 16 15 13 18 18 H 1.07998 * 119.99574 * 359.97438 * 17 16 15 19 19 C 1.38806 * 119.99880 * 180.02562 * 17 16 15 20 20 N 1.31615 * 120.00549 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99636 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47470 * 89.99691 * 21 19 17 23 23 H 1.48510 * 109.47073 * 209.99665 * 21 19 17 24 24 H 1.48502 * 109.47303 * 329.99410 * 21 19 17 25 25 C 1.54892 * 110.59929 * 57.17611 * 5 4 3 26 26 C 1.54883 * 102.75187 * 156.67656 * 25 5 4 27 27 C 1.54274 * 104.19561 * 322.05785 * 26 25 5 28 28 C 1.53874 * 106.59542 * 23.60613 * 27 26 25 29 29 H 1.09002 * 109.46999 * 304.93025 * 1 2 3 30 30 H 1.08994 * 109.46868 * 64.93314 * 1 2 3 31 31 H 1.08999 * 109.47050 * 184.93099 * 1 2 3 32 32 H 1.08997 * 109.47556 * 64.92360 * 3 2 1 33 33 H 1.09000 * 109.46861 * 304.92414 * 3 2 1 34 34 H 1.09003 * 109.47273 * 64.51977 * 4 3 2 35 35 H 1.08999 * 109.47095 * 304.51861 * 4 3 2 36 36 H 1.09007 * 109.58371 * 353.42043 * 9 8 6 37 37 H 1.09002 * 109.59036 * 113.69498 * 9 8 6 38 38 H 1.09001 * 109.49863 * 185.41205 * 10 9 8 39 39 H 1.08999 * 109.49565 * 65.31427 * 10 9 8 40 40 H 1.09003 * 109.46079 * 301.34383 * 11 10 9 41 41 H 1.08996 * 109.45929 * 181.38503 * 11 10 9 42 42 H 1.09005 * 109.49782 * 58.58294 * 12 11 10 43 43 H 1.09002 * 109.50074 * 178.68244 * 12 11 10 44 44 H 1.08991 * 109.47249 * 47.31689 * 15 13 8 45 45 H 1.09007 * 109.46763 * 167.31732 * 15 13 8 46 46 H 0.96997 * 120.00183 * 5.51072 * 16 15 13 47 47 H 0.96994 * 120.00283 * 180.02562 * 20 19 17 48 48 H 1.09004 * 110.75053 * 274.98949 * 25 5 4 49 49 H 1.08992 * 110.75835 * 38.35476 * 25 5 4 50 50 H 1.08995 * 110.48955 * 203.37959 * 26 25 5 51 51 H 1.09007 * 110.49011 * 80.72988 * 26 25 5 52 52 H 1.08998 * 110.02838 * 264.32375 * 27 26 25 53 53 H 1.08991 * 110.07486 * 142.91687 * 27 26 25 54 54 H 1.08998 * 110.03324 * 240.71462 * 28 27 26 55 55 H 1.09005 * 110.02773 * 119.28655 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5307 1.1868 -0.1239 5 6 4.1615 2.5760 -0.0108 6 6 3.7531 3.4361 -1.1789 7 8 3.0646 4.4179 -0.9976 8 7 4.1531 3.1142 -2.4250 9 6 4.8913 1.8689 -2.6761 10 6 6.1880 2.2056 -3.4191 11 6 5.8553 3.0044 -4.6813 12 6 5.1677 4.3149 -4.2914 13 6 3.8595 4.0021 -3.5583 14 1 3.1677 3.5076 -4.2403 15 6 3.2365 5.3013 -3.0438 16 7 1.8642 5.0430 -2.6008 17 6 1.0657 6.0822 -2.2038 18 1 1.4478 7.0923 -2.2169 19 6 -0.2344 5.8373 -1.7836 20 7 -0.6999 4.6064 -1.7671 21 14 -1.3233 7.2549 -1.2413 22 1 -2.0660 7.7849 -2.4129 23 1 -2.2881 6.7752 -0.2193 24 1 -0.4815 8.3317 -0.6605 25 6 3.7601 3.2497 1.3250 26 6 4.8974 4.2778 1.5447 27 6 6.1662 3.5484 1.0567 28 6 5.6983 2.4664 0.0678 29 1 -0.3633 0.5884 0.8426 30 1 -0.3633 0.4354 -0.9308 31 1 -0.3633 -1.0239 0.0883 32 1 1.7602 1.8145 0.9308 33 1 1.6206 1.8766 -0.8426 34 1 3.7835 0.7505 -1.0903 35 1 3.9115 0.5488 0.6736 36 1 5.1282 1.3870 -1.7275 37 1 4.2827 1.1994 -3.2839 38 1 6.6985 1.2833 -3.6962 39 1 6.8340 2.7995 -2.7725 40 1 5.1893 2.4198 -5.3160 41 1 6.7742 3.2241 -5.2248 42 1 5.8234 4.8889 -3.6365 43 1 4.9521 4.8939 -5.1894 44 1 3.8234 5.6792 -2.2068 45 1 3.2267 6.0414 -3.8441 46 1 1.5211 4.1358 -2.5888 47 1 -1.6084 4.4353 -1.4738 48 1 2.7977 3.7527 1.2299 49 1 3.7373 2.5199 2.1342 50 1 4.9849 4.5299 2.6015 51 1 4.7209 5.1748 0.9509 52 1 6.6791 3.0866 1.9004 53 1 6.8316 4.2506 0.5546 54 1 5.9841 1.4794 0.4315 55 1 6.1360 2.6440 -0.9145 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752832696.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:49 Heat of formation + Delta-G solvation = -59.342804 kcal Electronic energy + Delta-G solvation = -33780.411782 eV Core-core repulsion = 29818.020799 eV Total energy + Delta-G solvation = -3962.390983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.12497 -39.43728 -38.54370 -37.79330 -36.12298 -34.25452 -33.56774 -32.95345 -31.53369 -29.61363 -28.85043 -27.67361 -26.74615 -25.84740 -24.38506 -23.94223 -23.41213 -22.11814 -21.31840 -20.98101 -19.56069 -18.75899 -17.50505 -17.47160 -16.98739 -16.82874 -16.69111 -16.22076 -15.98049 -15.74872 -15.59530 -15.31426 -15.25727 -14.99620 -14.84848 -14.47309 -14.11209 -13.97238 -13.78333 -13.57982 -13.45989 -13.24341 -13.04753 -12.83696 -12.69570 -12.53109 -12.26894 -12.21860 -12.18166 -12.12957 -12.02290 -11.87943 -11.83072 -11.70439 -11.68699 -11.54579 -11.34815 -11.27170 -11.13350 -10.83333 -10.66988 -9.69324 -9.31268 -8.59188 -7.82764 -4.99841 1.39796 1.42237 1.49940 2.09220 2.22056 2.60049 2.70593 3.48956 3.50195 3.63587 3.69463 3.86497 3.90729 3.98545 4.06653 4.13346 4.16764 4.27687 4.35747 4.36885 4.41743 4.45059 4.51358 4.53130 4.55771 4.56467 4.58687 4.66319 4.70002 4.75972 4.80337 4.85098 4.88673 4.96965 5.00924 5.02732 5.07165 5.09413 5.10216 5.12309 5.18519 5.20619 5.26954 5.28174 5.37024 5.41176 5.50333 5.52637 5.57731 5.92715 6.09570 6.37329 6.79001 7.44254 7.73238 8.25932 8.49377 9.41459 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008477 B = 0.005615 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3302.171966 B = 4985.638845 C = 6073.034783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.399 6.399 3 C 0.070 3.930 4 C -0.099 4.099 5 C -0.072 4.072 6 C 0.485 3.515 7 O -0.501 6.501 8 N -0.611 5.611 9 C 0.088 3.912 10 C -0.128 4.128 11 C -0.113 4.113 12 C -0.118 4.118 13 C 0.147 3.853 14 H 0.050 0.950 15 C 0.168 3.832 16 N -0.697 5.697 17 C -0.206 4.206 18 H 0.057 0.943 19 C -0.082 4.082 20 N -0.968 5.968 21 Si 0.961 3.039 22 H -0.288 1.288 23 H -0.298 1.298 24 H -0.281 1.281 25 C -0.104 4.104 26 C -0.122 4.122 27 C -0.114 4.114 28 C -0.113 4.113 29 H 0.036 0.964 30 H 0.025 0.975 31 H 0.115 0.885 32 H 0.038 0.962 33 H 0.013 0.987 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.015 0.985 45 H 0.010 0.990 46 H 0.366 0.634 47 H 0.242 0.758 48 H 0.034 0.966 49 H 0.090 0.910 50 H 0.074 0.926 51 H 0.032 0.968 52 H 0.089 0.911 53 H 0.061 0.939 54 H 0.105 0.895 55 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.463 -12.272 1.163 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.318 6.318 3 C -0.007 4.007 4 C -0.136 4.136 5 C -0.075 4.075 6 C 0.271 3.729 7 O -0.373 6.373 8 N -0.348 5.348 9 C -0.034 4.034 10 C -0.166 4.166 11 C -0.150 4.150 12 C -0.156 4.156 13 C 0.043 3.957 14 H 0.068 0.932 15 C 0.041 3.959 16 N -0.337 5.337 17 C -0.339 4.339 18 H 0.075 0.925 19 C -0.273 4.273 20 N -0.621 5.621 21 Si 0.792 3.208 22 H -0.215 1.215 23 H -0.225 1.225 24 H -0.206 1.206 25 C -0.141 4.141 26 C -0.160 4.160 27 C -0.152 4.152 28 C -0.150 4.150 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.133 0.867 32 H 0.056 0.944 33 H 0.031 0.969 34 H 0.109 0.891 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.033 0.967 45 H 0.028 0.972 46 H 0.198 0.802 47 H 0.050 0.950 48 H 0.053 0.947 49 H 0.108 0.892 50 H 0.093 0.907 51 H 0.051 0.949 52 H 0.108 0.892 53 H 0.080 0.920 54 H 0.124 0.876 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 19.176 -11.684 1.305 22.493 hybrid contribution -2.065 1.281 0.277 2.446 sum 17.111 -10.403 1.582 20.087 Atomic orbital electron populations 1.22815 0.80231 1.03686 0.99688 1.87707 1.20661 1.27973 1.95478 1.22436 0.95488 0.83814 0.98973 1.21788 0.91355 0.95263 1.05183 1.21552 0.98450 0.94093 0.93436 1.20943 0.80113 0.87281 0.84561 1.91197 1.34049 1.27982 1.84080 1.47968 1.57907 1.22834 1.06059 1.22330 0.93255 0.85237 1.02540 1.21950 0.96163 1.01782 0.96694 1.21489 1.00914 0.94820 0.97802 1.21842 0.94708 0.99258 0.99836 1.21281 0.96664 0.90103 0.87684 0.93151 1.20814 0.86264 0.94437 0.94338 1.42225 1.09011 1.05599 1.76889 1.19424 0.93202 0.88764 1.32499 0.92495 1.25256 0.98910 0.98263 1.04868 1.69816 1.15842 1.19371 1.57102 0.85296 0.78830 0.79275 0.77409 1.21507 1.22531 1.20624 1.22395 0.98211 0.98057 0.95473 1.22279 0.95280 0.97510 1.00901 1.22097 0.96394 0.97287 0.99375 1.22504 0.89983 1.01341 1.01149 0.94535 0.95600 0.86683 0.94394 0.96867 0.89148 0.87611 0.87066 0.91997 0.87978 0.91146 0.91840 0.89653 0.91884 0.90600 0.96712 0.97250 0.80187 0.94957 0.94712 0.89156 0.90690 0.94891 0.89196 0.92042 0.87619 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 11.01 113.37 1.25 2.24 16 2 O -0.40 -13.27 10.70 -148.98 -1.59 -14.86 16 3 C 0.07 2.47 5.52 71.98 0.40 2.87 16 4 C -0.10 -2.57 4.22 30.59 0.13 -2.44 16 5 C -0.07 -2.00 0.27 -51.85 -0.01 -2.01 16 6 C 0.48 17.84 5.03 87.66 0.44 18.28 16 7 O -0.50 -24.65 9.08 -3.03 -0.03 -24.67 16 8 N -0.61 -19.00 2.89 -795.01 -2.30 -21.30 16 9 C 0.09 1.83 4.09 86.36 0.35 2.19 16 10 C -0.13 -1.92 5.85 30.67 0.18 -1.74 16 11 C -0.11 -1.94 5.88 30.62 0.18 -1.76 16 12 C -0.12 -2.90 5.34 30.67 0.16 -2.73 16 13 C 0.15 5.05 2.91 44.97 0.13 5.18 16 14 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 15 C 0.17 7.66 4.89 86.38 0.42 8.08 16 16 N -0.70 -39.20 3.18 -343.46 -1.09 -40.29 16 17 C -0.21 -12.77 9.73 84.03 0.82 -11.95 16 18 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 19 C -0.08 -5.14 5.50 84.86 0.47 -4.68 16 20 N -0.97 -63.48 13.06 21.65 0.28 -63.19 16 21 Si 0.96 50.88 29.55 68.60 2.03 52.90 16 22 H -0.29 -14.75 7.11 99.48 0.71 -14.05 16 23 H -0.30 -15.81 7.11 99.48 0.71 -15.11 16 24 H -0.28 -14.42 7.11 99.48 0.71 -13.71 16 25 C -0.10 -3.19 4.28 31.88 0.14 -3.06 16 26 C -0.12 -3.39 6.55 31.67 0.21 -3.18 16 27 C -0.11 -2.26 6.80 31.32 0.21 -2.05 16 28 C -0.11 -2.13 4.60 31.32 0.14 -1.99 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 33 H 0.01 0.59 7.59 -2.39 -0.02 0.57 16 34 H 0.09 2.14 5.18 -2.39 -0.01 2.13 16 35 H 0.11 2.16 8.01 -2.39 -0.02 2.14 16 36 H 0.11 1.95 3.22 -2.38 -0.01 1.94 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.05 7.05 -2.39 -0.02 1.03 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.02 0.75 6.40 -2.39 -0.02 0.73 16 45 H 0.01 0.44 8.10 -2.38 -0.02 0.43 16 46 H 0.37 22.19 7.17 -92.71 -0.66 21.52 16 47 H 0.24 15.44 8.31 -92.71 -0.77 14.67 16 48 H 0.03 1.43 7.06 -2.38 -0.02 1.41 16 49 H 0.09 2.30 8.06 -2.39 -0.02 2.28 16 50 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.03 1.16 7.93 -2.38 -0.02 1.14 16 52 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 53 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 54 H 0.11 1.34 7.75 -2.39 -0.02 1.33 16 55 H 0.08 1.49 4.53 -2.38 -0.01 1.48 16 Total: -1.00 -79.89 399.14 3.11 -76.78 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.20 Total: 33.40 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 5.62 Total: 1.24 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -3.11 Total: -124.79 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -1.62 Total: -39.53 kcal Atomic # 14 Polarization: 50.88 SS G_CDS: 2.03 Total: 52.90 kcal Total: -79.89 3.11 -76.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752832696.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.434 kcal (2) G-P(sol) polarization free energy of solvation -79.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds