Wall clock time and date at job start Tue Mar 31 2020 22:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00134 * 2 1 4 4 C 1.52997 * 109.47264 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47466 * 59.99856 * 4 3 2 6 6 O 1.21277 * 119.99998 * 119.99726 * 5 4 3 7 7 N 1.34777 * 120.00075 * 300.00543 * 5 4 3 8 8 C 1.46500 * 120.00084 * 180.02562 * 7 5 4 9 9 C 1.53007 * 109.46926 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.46732 * 179.97438 * 9 8 7 11 11 H 1.08999 * 110.88296 * 54.29592 * 10 9 8 12 12 C 1.55153 * 111.00134 * 178.17584 * 10 9 8 13 13 C 1.54321 * 102.94154 * 153.57700 * 12 10 9 14 14 N 1.47020 * 107.26983 * 337.80414 * 13 12 10 15 15 C 1.36938 * 125.64779 * 178.97416 * 14 13 12 16 16 H 1.08005 * 119.99873 * 179.97438 * 15 14 13 17 17 C 1.38818 * 120.00190 * 359.97438 * 15 14 13 18 18 N 1.31620 * 119.99550 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00273 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47202 * 59.99553 * 19 17 15 21 21 H 1.48495 * 109.47281 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47049 * 299.99872 * 19 17 15 23 23 C 1.47471 * 108.72412 * 358.97747 * 14 13 12 24 24 C 1.53002 * 109.46817 * 299.99852 * 4 3 2 25 25 C 1.53002 * 109.47128 * 180.02562 * 24 4 3 26 26 C 1.53006 * 109.47212 * 59.99664 * 25 24 4 27 27 C 1.53002 * 109.47345 * 300.00598 * 26 25 24 28 28 C 1.52996 * 109.47131 * 180.02562 * 4 3 2 29 29 H 1.08994 * 109.46829 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47036 * 300.00109 * 1 2 3 31 31 H 1.09002 * 109.46796 * 60.00253 * 1 2 3 32 32 H 1.09001 * 109.47103 * 300.00246 * 3 2 1 33 33 H 1.09004 * 109.47054 * 59.99750 * 3 2 1 34 34 H 0.97003 * 120.00084 * 359.97438 * 7 5 4 35 35 H 1.09001 * 109.46596 * 299.99345 * 8 7 5 36 36 H 1.08992 * 109.47082 * 59.99593 * 8 7 5 37 37 H 1.08998 * 109.46501 * 299.99161 * 9 8 7 38 38 H 1.08996 * 109.47455 * 59.99162 * 9 8 7 39 39 H 1.09001 * 110.72370 * 271.93812 * 12 10 9 40 40 H 1.09003 * 110.72371 * 35.03154 * 12 10 9 41 41 H 1.08998 * 109.88712 * 97.22727 * 13 12 10 42 42 H 1.09003 * 109.88157 * 218.23459 * 13 12 10 43 43 H 0.97001 * 119.99748 * 180.02562 * 18 17 15 44 44 H 1.08997 * 110.34841 * 265.24984 * 23 14 13 45 45 H 1.08999 * 110.40264 * 142.91157 * 23 14 13 46 46 H 1.08996 * 109.47407 * 299.99780 * 24 4 3 47 47 H 1.09002 * 109.47070 * 60.00180 * 24 4 3 48 48 H 1.09001 * 109.47248 * 300.00553 * 25 24 4 49 49 H 1.08998 * 109.47844 * 179.97438 * 25 24 4 50 50 H 1.08992 * 109.47342 * 179.97438 * 26 25 24 51 51 H 1.09004 * 109.46785 * 60.00293 * 26 25 24 52 52 H 1.09004 * 109.46930 * 299.99606 * 27 26 25 53 53 H 1.08992 * 109.47060 * 179.97438 * 27 26 25 54 54 H 1.09001 * 109.46997 * 299.99574 * 28 4 3 55 55 H 1.09004 * 109.47298 * 59.99717 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9807 0.4366 -1.2294 6 8 4.7226 0.9690 -2.0275 7 7 3.5543 -0.8240 -1.4427 8 6 3.9876 -1.5515 -2.6382 9 6 3.3656 -2.9494 -2.6380 10 6 3.8177 -3.7089 -3.8869 11 1 4.9050 -3.7211 -3.9619 12 6 3.2430 -5.1500 -3.8998 13 6 3.1922 -5.4884 -5.4046 14 7 3.1700 -4.2144 -6.1379 15 6 3.1448 -4.0780 -7.5003 16 1 3.1294 -3.0936 -7.9443 17 6 3.1388 -5.2051 -8.3107 18 7 3.1580 -6.4047 -7.7695 19 14 3.1036 -5.0192 -10.1690 20 1 4.3023 -4.2638 -10.6137 21 1 3.1032 -6.3629 -10.8010 22 1 1.8778 -4.2828 -10.5697 23 6 3.1797 -3.1072 -5.1638 24 6 3.9864 0.4257 1.2503 25 6 5.5116 0.3054 1.2513 26 6 6.1335 1.7034 1.2515 27 6 5.6826 2.4624 0.0020 28 6 4.1578 2.5824 0.0013 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 2.9611 -1.2499 -0.8042 35 1 3.6667 -1.0108 -3.5286 36 1 5.0741 -1.6376 -2.6372 37 1 3.6869 -3.4898 -1.7476 38 1 2.2790 -2.8636 -2.6386 39 1 3.9073 -5.8349 -3.3728 40 1 2.2445 -5.1710 -3.4630 41 1 4.0750 -6.0626 -5.6855 42 1 2.2917 -6.0616 -5.6254 43 1 3.1542 -7.1923 -8.3358 44 1 2.1624 -2.7739 -4.9588 45 1 3.7834 -2.2793 -5.5356 46 1 3.6644 0.9667 2.1400 47 1 3.5430 -0.5701 1.2503 48 1 5.8341 -0.2354 0.3615 49 1 5.8330 -0.2349 2.1417 50 1 7.2201 1.6177 1.2527 51 1 5.8111 2.2442 2.1413 52 1 6.0050 1.9215 -0.8878 53 1 6.1252 3.4584 0.0024 54 1 3.8366 3.1235 -0.8887 55 1 3.8357 3.1231 0.8913 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753332006.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:20 Heat of formation + Delta-G solvation = -105.616554 kcal Electronic energy + Delta-G solvation = -31067.812487 eV Core-core repulsion = 27103.414924 eV Total energy + Delta-G solvation = -3964.397563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.83957 -39.53310 -38.73566 -37.99758 -36.33912 -34.74694 -33.30968 -32.35698 -31.54770 -30.61876 -28.18137 -27.96555 -26.60447 -26.03864 -24.36744 -23.54498 -22.98609 -21.84926 -21.65996 -21.13585 -20.10648 -18.86848 -17.60812 -17.34663 -17.18423 -16.89891 -16.66306 -16.52818 -16.20849 -15.93624 -15.56584 -15.42945 -15.17584 -14.85059 -14.67168 -14.37143 -14.08395 -13.85707 -13.67163 -13.48916 -13.31794 -13.10998 -13.03986 -12.95837 -12.94006 -12.79208 -12.69422 -12.65047 -12.25102 -12.15682 -12.05721 -11.93978 -11.80138 -11.65225 -11.47495 -11.38346 -11.33068 -11.07180 -10.99800 -10.70872 -10.61223 -10.38608 -9.90724 -8.89878 -7.86079 -5.21480 1.42896 1.46827 1.53161 1.72195 2.28855 2.48529 2.74372 3.31261 3.62274 3.64458 3.70040 3.79781 3.86257 3.97960 4.03820 4.15985 4.20872 4.28540 4.33850 4.37943 4.40297 4.49537 4.54252 4.59507 4.60932 4.63546 4.65588 4.67652 4.68766 4.75335 4.77964 4.90086 4.93782 4.97424 4.99753 5.05990 5.12895 5.15343 5.17606 5.24951 5.26001 5.31075 5.39766 5.41006 5.43107 5.51403 5.53972 5.70131 5.73262 5.78636 6.17754 6.20046 6.73043 7.10232 7.41638 7.77985 8.42676 9.24144 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016938 B = 0.002315 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.648689 B =12090.664280 C =12433.927574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.404 6.404 3 C 0.074 3.926 4 C -0.069 4.069 5 C 0.519 3.481 6 O -0.582 6.582 7 N -0.707 5.707 8 C 0.124 3.876 9 C -0.096 4.096 10 C -0.085 4.085 11 H 0.070 0.930 12 C -0.122 4.122 13 C 0.182 3.818 14 N -0.631 5.631 15 C -0.246 4.246 16 H 0.078 0.922 17 C -0.068 4.068 18 N -0.951 5.951 19 Si 0.979 3.021 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.276 1.276 23 C 0.136 3.864 24 C -0.096 4.096 25 C -0.125 4.125 26 C -0.115 4.115 27 C -0.134 4.134 28 C -0.089 4.089 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.416 0.584 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.007 0.993 42 H 0.005 0.995 43 H 0.247 0.753 44 H 0.023 0.977 45 H 0.030 0.970 46 H 0.097 0.903 47 H 0.076 0.924 48 H 0.034 0.966 49 H 0.080 0.920 50 H 0.057 0.943 51 H 0.080 0.920 52 H 0.057 0.943 53 H 0.065 0.935 54 H 0.053 0.947 55 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.467 16.674 27.507 32.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.324 6.324 3 C -0.003 4.003 4 C -0.073 4.073 5 C 0.306 3.694 6 O -0.463 6.463 7 N -0.360 5.360 8 C 0.000 4.000 9 C -0.134 4.134 10 C -0.105 4.105 11 H 0.089 0.911 12 C -0.160 4.160 13 C 0.057 3.943 14 N -0.357 5.357 15 C -0.376 4.376 16 H 0.095 0.905 17 C -0.260 4.260 18 N -0.600 5.600 19 Si 0.807 3.193 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.202 1.202 23 C 0.011 3.989 24 C -0.134 4.134 25 C -0.162 4.162 26 C -0.153 4.153 27 C -0.172 4.172 28 C -0.127 4.127 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.255 0.745 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.026 0.974 42 H 0.023 0.977 43 H 0.056 0.944 44 H 0.041 0.959 45 H 0.048 0.952 46 H 0.115 0.885 47 H 0.095 0.905 48 H 0.053 0.947 49 H 0.099 0.901 50 H 0.075 0.925 51 H 0.099 0.901 52 H 0.076 0.924 53 H 0.084 0.916 54 H 0.072 0.928 55 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.860 16.731 26.759 31.614 hybrid contribution -0.331 -0.272 -1.683 1.737 sum -2.191 16.459 25.076 30.075 Atomic orbital electron populations 1.22878 0.79217 1.03863 1.00661 1.87666 1.21402 1.27734 1.95551 1.22543 0.90402 0.85372 1.01992 1.20969 0.95175 0.97321 0.93791 1.20931 0.79323 0.81739 0.87401 1.90623 1.38141 1.68761 1.48789 1.46066 1.50272 1.14490 1.25212 1.21213 0.98751 0.92468 0.87575 1.21546 1.01244 0.93101 0.97501 1.22145 0.99557 0.95040 0.93736 0.91131 1.22758 1.01380 0.96200 0.95646 1.20930 0.97416 0.87167 0.88796 1.44851 1.86968 1.02408 1.01515 1.19431 1.43140 0.93055 0.81932 0.90460 1.25676 1.02619 0.95029 1.02721 1.70195 1.58245 0.97102 1.34497 0.85143 0.78230 0.76386 0.79530 1.20404 1.21702 1.20240 1.21797 0.96997 0.90519 0.89613 1.21540 0.95374 1.00890 0.95552 1.21593 0.95637 0.97487 1.01497 1.21531 0.99945 0.95636 0.98139 1.21720 0.95539 1.00775 0.99149 1.21308 0.95626 0.93017 1.02761 0.88599 0.92239 0.94438 0.93731 0.89240 0.74459 0.93688 0.92802 0.88867 0.90445 0.89945 0.90542 0.97448 0.97706 0.94365 0.95910 0.95195 0.88499 0.90540 0.94705 0.90137 0.92456 0.90091 0.92430 0.91596 0.92776 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -5.63 7.53 -148.98 -1.12 -6.75 16 3 C 0.07 0.97 4.79 71.98 0.35 1.32 16 4 C -0.07 -1.14 0.52 -52.93 -0.03 -1.17 16 5 C 0.52 12.92 4.96 87.66 0.43 13.36 16 6 O -0.58 -19.43 13.66 -3.02 -0.04 -19.47 16 7 N -0.71 -16.16 5.09 -463.06 -2.36 -18.52 16 8 C 0.12 3.34 5.55 86.38 0.48 3.82 16 9 C -0.10 -2.34 4.84 30.60 0.15 -2.19 16 10 C -0.08 -2.86 3.04 -9.40 -0.03 -2.88 16 11 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 12 C -0.12 -4.39 6.42 31.78 0.20 -4.18 16 13 C 0.18 9.33 5.37 86.73 0.47 9.79 16 14 N -0.63 -34.29 3.40 -691.88 -2.35 -36.64 16 15 C -0.25 -14.62 10.28 84.03 0.86 -13.75 16 16 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 17 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 18 N -0.95 -59.31 10.31 21.65 0.22 -59.09 16 19 Si 0.98 47.58 29.55 68.60 2.03 49.60 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 C 0.14 5.82 6.04 86.84 0.52 6.35 16 24 C -0.10 -1.21 4.49 30.60 0.14 -1.07 16 25 C -0.12 -1.87 5.70 30.60 0.17 -1.70 16 26 C -0.12 -1.67 5.92 30.60 0.18 -1.48 16 27 C -0.13 -2.51 5.63 30.58 0.17 -2.34 16 28 C -0.09 -1.42 4.37 30.58 0.13 -1.29 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.42 7.79 5.85 -92.71 -0.54 7.25 16 35 H 0.04 1.43 7.59 -2.39 -0.02 1.41 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 1.82 8.03 -2.39 -0.02 1.80 16 39 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.08 2.47 8.04 -2.39 -0.02 2.45 16 41 H 0.01 0.42 7.38 -2.39 -0.02 0.40 16 42 H 0.00 0.27 7.51 -2.39 -0.02 0.25 16 43 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 44 H 0.02 0.96 7.96 -2.39 -0.02 0.95 16 45 H 0.03 1.31 8.10 -2.39 -0.02 1.29 16 46 H 0.10 0.78 8.14 -2.39 -0.02 0.77 16 47 H 0.08 0.96 7.10 -2.39 -0.02 0.95 16 48 H 0.03 0.72 7.22 -2.39 -0.02 0.70 16 49 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 52 H 0.06 1.54 5.51 -2.38 -0.01 1.52 16 53 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 54 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 55 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -75.64 411.95 2.60 -73.04 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.30 Total: 17.27 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 5.92 Total: 0.56 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -4.48 Total: -114.25 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -1.16 Total: -26.23 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.60 kcal Total: -75.64 2.60 -73.04 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753332006.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.575 kcal (2) G-P(sol) polarization free energy of solvation -75.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds