Wall clock time and date at job start Tue Mar 31 2020 22:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00150 * 2 1 4 4 C 1.52999 * 109.47040 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47015 * 299.99620 * 4 3 2 6 6 O 1.21283 * 119.99960 * 240.00280 * 5 4 3 7 7 N 1.34771 * 120.00032 * 60.00210 * 5 4 3 8 8 C 1.46497 * 120.00162 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47393 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.47345 * 180.02562 * 9 8 7 11 11 H 1.08997 * 110.64274 * 303.31438 * 10 9 8 12 12 C 1.55156 * 110.87335 * 180.02562 * 10 9 8 13 13 C 1.54908 * 101.58197 * 206.06318 * 12 10 9 14 14 N 1.47422 * 104.83357 * 37.01425 * 13 12 10 15 15 C 1.36934 * 125.65321 * 155.91756 * 14 13 12 16 16 H 1.07997 * 120.00156 * 179.97438 * 15 14 13 17 17 C 1.38816 * 119.99339 * 359.94052 * 15 14 13 18 18 N 1.31619 * 120.00310 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99553 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47325 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.47031 * 120.00517 * 19 17 15 22 22 H 1.48504 * 109.47085 * 240.00294 * 19 17 15 23 23 C 1.47031 * 108.70136 * 335.86884 * 14 13 12 24 24 C 1.52992 * 109.47326 * 59.99583 * 4 3 2 25 25 C 1.53000 * 109.47275 * 179.97438 * 24 4 3 26 26 C 1.52996 * 109.47659 * 300.00546 * 25 24 4 27 27 C 1.53002 * 109.47180 * 59.99413 * 26 25 24 28 28 C 1.53003 * 109.46728 * 179.97438 * 4 3 2 29 29 H 1.09003 * 109.46572 * 299.99892 * 1 2 3 30 30 H 1.08997 * 109.47417 * 59.99823 * 1 2 3 31 31 H 1.09006 * 109.47002 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47057 * 59.99911 * 3 2 1 33 33 H 1.09000 * 109.46875 * 300.00197 * 3 2 1 34 34 H 0.97001 * 119.99904 * 0.02562 * 7 5 4 35 35 H 1.09007 * 109.46904 * 60.00482 * 8 7 5 36 36 H 1.09000 * 109.47700 * 300.00314 * 8 7 5 37 37 H 1.08998 * 109.47021 * 59.99794 * 9 8 7 38 38 H 1.09005 * 109.47177 * 300.00058 * 9 8 7 39 39 H 1.08999 * 111.00338 * 324.14259 * 12 10 9 40 40 H 1.09000 * 110.99867 * 87.94908 * 12 10 9 41 41 H 1.09000 * 110.36459 * 155.84880 * 13 12 10 42 42 H 1.09001 * 110.36573 * 278.06223 * 13 12 10 43 43 H 0.97000 * 119.99728 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.88059 * 241.64343 * 23 14 13 45 45 H 1.08994 * 109.87878 * 120.47623 * 23 14 13 46 46 H 1.09000 * 109.47545 * 299.99900 * 24 4 3 47 47 H 1.09011 * 109.47223 * 60.00340 * 24 4 3 48 48 H 1.08998 * 109.47432 * 179.97438 * 25 24 4 49 49 H 1.09000 * 109.46871 * 60.00303 * 25 24 4 50 50 H 1.09000 * 109.46781 * 299.99812 * 26 25 24 51 51 H 1.08991 * 109.47732 * 179.97438 * 26 25 24 52 52 H 1.09000 * 109.47503 * 180.02562 * 27 26 25 53 53 H 1.09000 * 109.46938 * 60.00495 * 27 26 25 54 54 H 1.08997 * 109.47185 * 299.99007 * 28 4 3 55 55 H 1.08998 * 109.47386 * 60.00193 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9806 0.4365 1.2296 6 8 4.7226 0.9689 2.0277 7 7 3.5542 -0.8240 1.4429 8 6 3.9874 -1.5514 2.6385 9 6 3.3655 -2.9493 2.6383 10 6 3.8173 -3.7088 3.8873 11 1 4.9052 -3.7549 3.9364 12 6 3.2047 -5.1339 3.9196 13 6 3.1903 -5.4318 5.4397 14 7 2.8575 -4.1432 6.0738 15 6 2.2866 -3.9850 7.3083 16 1 2.0817 -2.9940 7.6856 17 6 1.9707 -5.0986 8.0746 18 7 2.2203 -6.3063 7.6148 19 14 1.1912 -4.8828 9.7585 20 1 1.0148 -3.4356 10.0406 21 1 -0.1323 -5.5561 9.7812 22 1 2.0710 -5.4855 10.7920 23 6 3.2412 -3.0559 5.1615 24 6 3.9864 0.4255 -1.2501 25 6 5.5117 0.3051 -1.2510 26 6 6.1336 1.7030 -1.2513 27 6 5.6827 2.4621 -0.0018 28 6 4.1578 2.5823 -0.0013 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 2.9611 -1.2500 0.8043 35 1 3.6664 -1.0107 3.5289 36 1 5.0739 -1.6376 2.6377 37 1 3.6867 -3.4898 1.7479 38 1 2.2788 -2.8636 2.6390 39 1 2.1938 -5.1339 3.5119 40 1 3.8383 -5.8436 3.3877 41 1 2.4298 -6.1770 5.6730 42 1 4.1711 -5.7761 5.7680 43 1 1.9998 -7.0843 8.1505 44 1 3.9983 -2.4279 5.6310 45 1 2.3656 -2.4582 4.9083 46 1 3.5431 -0.5703 -1.2501 47 1 3.6645 0.9665 -2.1400 48 1 5.8329 -0.2361 -2.1409 49 1 5.8340 -0.2357 -0.3613 50 1 5.8113 2.2438 -2.1411 51 1 7.2202 1.6173 -1.2515 52 1 6.1254 3.4582 -0.0022 53 1 6.0050 1.9213 0.8880 54 1 3.8359 3.1229 -0.8913 55 1 3.8366 3.1235 0.8887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753332007.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:24 Heat of formation + Delta-G solvation = -104.108416 kcal Electronic energy + Delta-G solvation = -31122.290270 eV Core-core repulsion = 27157.958105 eV Total energy + Delta-G solvation = -3964.332165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.84811 -39.56028 -38.74568 -38.00338 -36.35062 -34.76519 -33.31140 -32.35714 -31.55268 -30.62125 -28.15474 -27.97777 -26.63002 -26.04903 -24.36772 -23.54894 -23.01603 -21.93294 -21.65062 -21.04298 -20.07266 -18.90385 -17.60513 -17.39430 -17.21296 -16.98158 -16.69260 -16.54757 -16.27090 -15.88433 -15.55731 -15.43428 -15.12092 -14.84945 -14.56749 -14.37225 -14.28173 -13.78934 -13.54202 -13.48426 -13.35433 -13.14500 -13.06048 -12.96481 -12.94615 -12.82666 -12.73068 -12.69072 -12.23378 -12.16884 -11.98586 -11.94162 -11.78209 -11.66285 -11.50091 -11.41643 -11.24511 -11.07504 -11.00272 -10.76467 -10.62339 -10.39273 -9.91856 -8.89169 -7.78840 -5.23285 1.44149 1.45461 1.56038 1.71114 2.28067 2.48117 2.73239 3.29971 3.63705 3.64338 3.73244 3.75704 3.85581 3.94420 4.03003 4.17092 4.20571 4.27825 4.32765 4.36253 4.39607 4.48931 4.53369 4.58688 4.60709 4.63276 4.64933 4.66747 4.70349 4.72712 4.77541 4.87729 4.93389 4.96016 5.01631 5.06213 5.11696 5.15108 5.18938 5.25187 5.25793 5.30830 5.39356 5.40726 5.42442 5.50204 5.53270 5.68108 5.72684 5.82538 6.16493 6.31207 6.71756 7.10573 7.40248 7.78099 8.42308 9.23113 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.002347 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.690715 B =11926.093290 C =12196.833544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.404 6.404 3 C 0.073 3.927 4 C -0.069 4.069 5 C 0.519 3.481 6 O -0.582 6.582 7 N -0.708 5.708 8 C 0.124 3.876 9 C -0.097 4.097 10 C -0.084 4.084 11 H 0.077 0.923 12 C -0.121 4.121 13 C 0.150 3.850 14 N -0.629 5.629 15 C -0.240 4.240 16 H 0.075 0.925 17 C -0.068 4.068 18 N -0.948 5.948 19 Si 0.981 3.019 20 H -0.269 1.269 21 H -0.287 1.287 22 H -0.291 1.291 23 C 0.136 3.864 24 C -0.096 4.096 25 C -0.124 4.124 26 C -0.115 4.115 27 C -0.134 4.134 28 C -0.089 4.089 29 H 0.036 0.964 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.416 0.584 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.072 0.928 42 H -0.017 1.017 43 H 0.248 0.752 44 H 0.009 0.991 45 H 0.023 0.977 46 H 0.075 0.925 47 H 0.097 0.903 48 H 0.080 0.920 49 H 0.034 0.966 50 H 0.080 0.920 51 H 0.057 0.943 52 H 0.066 0.934 53 H 0.057 0.943 54 H 0.097 0.903 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.335 15.902 -26.906 31.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.324 6.324 3 C -0.004 4.004 4 C -0.073 4.073 5 C 0.306 3.694 6 O -0.463 6.463 7 N -0.361 5.361 8 C 0.000 4.000 9 C -0.135 4.135 10 C -0.103 4.103 11 H 0.096 0.904 12 C -0.159 4.159 13 C 0.025 3.975 14 N -0.355 5.355 15 C -0.370 4.370 16 H 0.093 0.907 17 C -0.260 4.260 18 N -0.598 5.598 19 Si 0.809 3.191 20 H -0.194 1.194 21 H -0.214 1.214 22 H -0.218 1.218 23 C 0.011 3.989 24 C -0.134 4.134 25 C -0.162 4.162 26 C -0.152 4.152 27 C -0.172 4.172 28 C -0.127 4.127 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.255 0.745 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.001 0.999 43 H 0.057 0.943 44 H 0.027 0.973 45 H 0.041 0.959 46 H 0.094 0.906 47 H 0.115 0.885 48 H 0.099 0.901 49 H 0.053 0.947 50 H 0.099 0.901 51 H 0.076 0.924 52 H 0.084 0.916 53 H 0.076 0.924 54 H 0.116 0.884 55 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.877 15.993 -26.169 30.682 hybrid contribution -0.588 -0.117 1.603 1.712 sum 0.289 15.876 -24.566 29.251 Atomic orbital electron populations 1.22877 0.79240 1.03829 1.00667 1.87664 1.21382 1.27779 1.95549 1.22549 0.90481 0.85350 1.01973 1.20973 0.95104 0.97366 0.93812 1.20934 0.79323 0.81702 0.87416 1.90621 1.38159 1.68729 1.48777 1.46071 1.50278 1.14535 1.25186 1.21221 0.98863 0.92384 0.87524 1.21581 1.00954 0.93247 0.97669 1.22008 0.99794 0.95277 0.93251 0.90447 1.22873 1.00755 0.95925 0.96359 1.21755 0.97177 0.89063 0.89505 1.44880 1.71548 1.02599 1.16464 1.19481 1.31817 0.93083 0.92579 0.90681 1.25646 1.02710 0.95009 1.02675 1.70071 1.54478 0.97374 1.37922 0.84974 0.77455 0.77636 0.79049 1.19393 1.21373 1.21812 1.21527 0.95852 0.90839 0.90664 1.21540 0.95452 1.00857 0.95520 1.21589 0.95555 0.97511 1.01533 1.21528 0.99971 0.95607 0.98119 1.21724 0.95464 1.00800 0.99178 1.21312 0.95691 0.92965 1.02748 0.94512 0.92128 0.88684 0.93811 0.89197 0.74502 0.93890 0.92455 0.88710 0.91071 0.91411 0.89515 0.90983 0.99892 0.94270 0.97331 0.95865 0.90593 0.88496 0.90102 0.94666 0.90097 0.92382 0.91566 0.92400 0.88442 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.40 -6.02 7.53 -148.98 -1.12 -7.14 16 3 C 0.07 1.02 4.79 71.98 0.35 1.36 16 4 C -0.07 -1.17 0.52 -52.93 -0.03 -1.19 16 5 C 0.52 13.15 4.96 87.66 0.44 13.58 16 6 O -0.58 -19.55 13.66 -3.04 -0.04 -19.60 16 7 N -0.71 -16.64 5.09 -463.06 -2.36 -19.00 16 8 C 0.12 3.41 5.52 86.38 0.48 3.89 16 9 C -0.10 -2.46 4.73 30.59 0.14 -2.31 16 10 C -0.08 -2.84 2.98 -9.60 -0.03 -2.86 16 11 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 12 C -0.12 -4.43 6.54 31.99 0.21 -4.22 16 13 C 0.15 7.64 5.89 86.86 0.51 8.15 16 14 N -0.63 -34.19 3.39 -691.98 -2.35 -36.54 16 15 C -0.24 -14.19 10.27 84.03 0.86 -13.33 16 16 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 17 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 18 N -0.95 -58.05 10.09 21.65 0.22 -57.83 16 19 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 23 C 0.14 5.98 5.98 86.73 0.52 6.50 16 24 C -0.10 -1.24 4.49 30.59 0.14 -1.10 16 25 C -0.12 -1.87 5.70 30.59 0.17 -1.70 16 26 C -0.11 -1.66 5.92 30.59 0.18 -1.47 16 27 C -0.13 -2.51 5.63 30.58 0.17 -2.34 16 28 C -0.09 -1.45 4.37 30.58 0.13 -1.31 16 29 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.42 8.15 5.85 -92.71 -0.54 7.61 16 35 H 0.04 1.41 7.49 -2.38 -0.02 1.39 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 1.84 8.06 -2.38 -0.02 1.82 16 39 H 0.07 2.39 8.05 -2.39 -0.02 2.37 16 40 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.07 4.15 5.87 -2.39 -0.01 4.14 16 42 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 43 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.02 1.01 7.76 -2.39 -0.02 1.00 16 46 H 0.08 0.99 7.10 -2.39 -0.02 0.97 16 47 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 48 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.03 0.73 7.22 -2.39 -0.02 0.71 16 50 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 52 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 53 H 0.06 1.54 5.51 -2.39 -0.01 1.53 16 54 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 55 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 Total: -1.00 -74.12 411.02 2.64 -71.49 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.30 Total: 19.77 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 5.96 Total: -0.30 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -4.49 Total: -113.37 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -1.16 Total: -26.74 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -74.12 2.64 -71.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753332007.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.622 kcal (2) G-P(sol) polarization free energy of solvation -74.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds