Wall clock time and date at job start Tue Mar 31 2020 22:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00108 * 2 1 4 4 C 1.53000 * 109.47185 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47195 * 306.67251 * 4 3 2 6 6 O 1.21289 * 119.99574 * 121.90856 * 5 4 3 7 7 N 1.34773 * 120.00089 * 301.91729 * 5 4 3 8 8 C 1.47017 * 125.65278 * 5.58057 * 7 5 4 9 9 C 1.54318 * 107.27543 * 181.10787 * 8 7 5 10 10 C 1.55159 * 102.94197 * 22.19783 * 9 8 7 11 11 H 1.08999 * 111.01012 * 82.60539 * 10 9 8 12 12 C 1.52996 * 111.00563 * 206.42493 * 10 9 8 13 13 N 1.46503 * 109.46990 * 293.54506 * 12 10 9 14 14 C 1.46498 * 119.99790 * 269.99610 * 13 12 10 15 15 C 1.36931 * 120.00188 * 89.99755 * 13 12 10 16 16 H 1.08000 * 120.00334 * 354.81247 * 15 13 12 17 17 C 1.38812 * 119.99831 * 174.80493 * 15 13 12 18 18 N 1.31612 * 120.00127 * 323.44115 * 17 15 13 19 19 Si 1.86800 * 119.99579 * 143.16706 * 17 15 13 20 20 H 1.48504 * 109.47224 * 180.27720 * 19 17 15 21 21 H 1.48506 * 109.47213 * 300.27436 * 19 17 15 22 22 H 1.48500 * 109.47637 * 60.27548 * 19 17 15 23 23 C 1.47430 * 125.64457 * 185.64227 * 7 5 4 24 24 C 1.52993 * 109.47307 * 66.67780 * 4 3 2 25 25 C 1.53000 * 109.47307 * 179.97438 * 24 4 3 26 26 C 1.52999 * 109.47308 * 299.99843 * 25 24 4 27 27 C 1.53003 * 109.46813 * 59.99712 * 26 25 24 28 28 C 1.53000 * 109.47419 * 300.00220 * 27 26 25 29 29 H 1.09003 * 109.46643 * 59.99766 * 1 2 3 30 30 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47030 * 300.00402 * 1 2 3 32 32 H 1.09004 * 109.47279 * 59.99779 * 3 2 1 33 33 H 1.09002 * 109.47330 * 299.99516 * 3 2 1 34 34 H 1.09009 * 109.88035 * 61.69008 * 8 7 5 35 35 H 1.09002 * 109.88281 * 300.53297 * 8 7 5 36 36 H 1.08996 * 110.72441 * 263.83505 * 9 8 7 37 37 H 1.09003 * 110.72013 * 140.55910 * 9 8 7 38 38 H 1.08995 * 109.47389 * 173.54443 * 12 10 9 39 39 H 1.09001 * 109.47245 * 53.53902 * 12 10 9 40 40 H 1.08997 * 109.47459 * 268.47370 * 14 13 12 41 41 H 1.09007 * 109.47225 * 28.47089 * 14 13 12 42 42 H 1.09002 * 109.47381 * 148.46448 * 14 13 12 43 43 H 0.96997 * 120.00133 * 354.62037 * 18 17 15 44 44 H 1.08995 * 110.36918 * 36.98002 * 23 7 5 45 45 H 1.09001 * 110.36460 * 274.65595 * 23 7 5 46 46 H 1.08999 * 109.46995 * 299.99840 * 24 4 3 47 47 H 1.08998 * 109.47418 * 59.99862 * 24 4 3 48 48 H 1.09008 * 109.47171 * 179.97438 * 25 24 4 49 49 H 1.08998 * 109.47329 * 60.00032 * 25 24 4 50 50 H 1.08998 * 109.47080 * 300.00341 * 26 25 24 51 51 H 1.08999 * 109.47066 * 179.97438 * 26 25 24 52 52 H 1.08996 * 109.46538 * 180.02562 * 27 26 25 53 53 H 1.08998 * 109.46784 * 60.00448 * 27 26 25 54 54 H 1.09008 * 109.46883 * 300.00213 * 28 27 26 55 55 H 1.08997 * 109.47129 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9688 0.2992 1.1406 6 8 4.6175 -0.7013 0.9185 7 7 3.6353 0.6190 2.4066 8 6 2.7606 1.7305 2.8077 9 6 2.6908 1.7255 4.3492 10 6 3.9801 0.9627 4.7530 11 1 4.8436 1.6278 4.7542 12 6 3.8124 0.2842 6.1140 13 7 3.6812 1.3056 7.1560 14 6 4.8747 1.8185 7.8333 15 6 2.4431 1.7809 7.4969 16 1 1.5720 1.4657 6.9417 17 6 2.3076 2.6677 8.5562 18 7 3.0647 2.5370 9.6248 19 14 1.0560 4.0511 8.4617 20 1 1.1127 4.8560 9.7084 21 1 1.3651 4.9196 7.2973 22 1 -0.3048 3.4778 8.3041 23 6 4.0884 -0.0871 3.6189 24 6 3.9994 0.5748 -1.3236 25 6 5.5246 0.4546 -1.3232 26 6 6.1456 1.8428 -1.1558 27 6 5.6817 2.4527 0.1685 28 6 4.1564 2.5729 0.1681 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 1.7637 1.5866 2.3909 35 1 3.1777 2.6751 2.4585 36 1 1.8040 1.1933 4.6934 37 1 2.7067 2.7432 4.7393 38 1 4.6846 -0.3359 6.3209 39 1 2.9182 -0.3391 6.1016 40 1 5.0681 1.2258 8.7274 41 1 5.7305 1.7522 7.1614 42 1 4.7137 2.8592 8.1149 43 1 3.6616 1.7768 9.7063 44 1 5.1213 -0.4153 3.5031 45 1 3.4401 -0.9383 3.8267 46 1 3.5566 -0.4140 -1.4431 47 1 3.6860 1.2152 -2.1481 48 1 5.8551 0.0197 -2.2666 49 1 5.8384 -0.1856 -0.4988 50 1 5.8318 2.4830 -1.9803 51 1 7.2322 1.7571 -1.1551 52 1 6.1238 3.4418 0.2875 53 1 5.9955 1.8125 0.9929 54 1 3.8427 3.2131 -0.6565 55 1 3.8260 3.0078 1.1114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753352357.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:02 Heat of formation + Delta-G solvation = -73.723783 kcal Electronic energy + Delta-G solvation = -32377.510553 eV Core-core repulsion = 28414.495964 eV Total energy + Delta-G solvation = -3963.014589 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.12567 -39.65198 -38.64180 -37.88324 -37.31704 -34.30136 -33.16314 -32.01091 -31.45074 -30.35489 -28.22827 -28.04889 -27.02451 -26.05869 -25.01980 -23.65477 -22.97639 -22.53723 -21.58916 -21.09764 -19.73747 -19.48696 -17.78536 -17.52132 -17.20427 -16.77278 -16.59150 -16.31579 -16.05280 -15.85138 -15.43530 -15.28054 -15.16216 -14.90294 -14.71907 -14.58588 -14.40891 -14.13166 -13.69744 -13.59002 -13.51066 -13.33830 -13.03165 -12.92949 -12.80872 -12.74603 -12.57657 -12.50737 -12.37994 -12.16873 -12.06498 -11.98787 -11.86577 -11.77667 -11.64117 -11.51125 -11.43040 -11.09497 -10.95801 -10.57554 -10.40583 -10.27035 -9.57964 -9.00383 -8.25841 -5.11874 1.62815 1.68007 1.69245 1.87649 1.99567 2.71573 2.73978 3.17173 3.32520 3.46879 3.70039 3.70964 3.74597 3.87009 3.92730 4.07750 4.12321 4.18420 4.27563 4.31704 4.32414 4.44073 4.46143 4.50125 4.52315 4.54964 4.58521 4.60530 4.63611 4.64836 4.70437 4.79676 4.84145 4.85688 4.85892 4.90154 5.01575 5.03351 5.10432 5.15852 5.19512 5.20627 5.25103 5.27418 5.34711 5.37506 5.43031 5.46754 5.62123 5.88454 6.19181 6.42498 6.59779 7.05135 7.21395 7.88452 8.25224 9.05516 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.003196 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.546884 B = 8757.506393 C = 9368.961805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.054 3.946 4 C -0.066 4.066 5 C 0.548 3.452 6 O -0.577 6.577 7 N -0.614 5.614 8 C 0.094 3.906 9 C -0.103 4.103 10 C -0.101 4.101 11 H 0.070 0.930 12 C 0.166 3.834 13 N -0.619 5.619 14 C 0.143 3.857 15 C -0.350 4.350 16 H 0.068 0.932 17 C -0.074 4.074 18 N -0.943 5.943 19 Si 1.094 2.906 20 H -0.301 1.301 21 H -0.277 1.277 22 H -0.278 1.278 23 C 0.119 3.881 24 C -0.084 4.084 25 C -0.136 4.136 26 C -0.113 4.113 27 C -0.121 4.121 28 C -0.111 4.111 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.043 0.957 40 H -0.010 1.010 41 H 0.044 0.956 42 H 0.033 0.967 43 H 0.257 0.743 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.091 0.909 48 H 0.064 0.936 49 H 0.057 0.943 50 H 0.082 0.918 51 H 0.059 0.941 52 H 0.083 0.917 53 H 0.031 0.969 54 H 0.106 0.894 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 2.080 -25.279 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.334 6.334 3 C -0.022 4.022 4 C -0.069 4.069 5 C 0.338 3.662 6 O -0.457 6.457 7 N -0.347 5.347 8 C -0.028 4.028 9 C -0.141 4.141 10 C -0.123 4.123 11 H 0.088 0.912 12 C 0.039 3.961 13 N -0.343 5.343 14 C -0.003 4.003 15 C -0.479 4.479 16 H 0.086 0.914 17 C -0.271 4.271 18 N -0.586 5.586 19 Si 0.920 3.080 20 H -0.228 1.228 21 H -0.203 1.203 22 H -0.204 1.204 23 C -0.005 4.005 24 C -0.122 4.122 25 C -0.173 4.173 26 C -0.151 4.151 27 C -0.158 4.158 28 C -0.148 4.148 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.008 0.992 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.109 0.891 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.101 0.899 51 H 0.078 0.922 52 H 0.102 0.898 53 H 0.050 0.950 54 H 0.125 0.875 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.247 2.685 -24.682 24.859 hybrid contribution 0.543 -1.767 0.056 1.849 sum -0.704 0.918 -24.626 24.653 Atomic orbital electron populations 1.22883 0.79456 1.03411 1.01097 1.87926 1.21413 1.28416 1.95628 1.22990 0.90673 0.85369 1.03179 1.20900 0.95378 0.96648 0.93949 1.20502 0.77935 0.85155 0.82585 1.90575 1.42371 1.28907 1.83854 1.48526 1.48927 1.32059 1.05143 1.22656 0.94458 0.90020 0.95625 1.22417 0.97469 1.01594 0.92616 1.22774 0.98455 0.96680 0.94357 0.91198 1.20660 0.99057 0.89573 0.86763 1.44173 1.02783 1.45785 1.41514 1.20901 0.88087 0.97323 0.93993 1.20115 0.86481 1.26485 1.14839 0.91429 1.26706 1.04771 1.04220 0.91383 1.70930 1.28785 1.33630 1.25264 0.83139 0.74220 0.75093 0.75516 1.22796 1.20330 1.20391 1.22078 0.99357 0.95149 0.83871 1.21286 0.95992 1.00519 0.94374 1.21782 0.95343 0.98051 1.02164 1.21521 0.99961 0.96013 0.97558 1.21530 0.95455 1.01293 0.97542 1.21774 0.95424 0.93001 1.04647 0.92123 0.89578 0.93479 0.90830 0.89648 0.89940 0.89097 0.91897 0.90552 0.93643 0.93853 0.99182 0.93701 0.94855 0.93299 0.91861 0.92302 0.93308 0.89069 0.91694 0.92396 0.89936 0.92203 0.89844 0.95043 0.87512 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -9.44 9.74 -148.98 -1.45 -10.89 16 3 C 0.05 0.95 4.36 71.98 0.31 1.26 16 4 C -0.07 -1.35 0.34 -52.93 -0.02 -1.37 16 5 C 0.55 15.94 4.57 87.66 0.40 16.34 16 6 O -0.58 -21.21 13.89 -3.06 -0.04 -21.25 16 7 N -0.61 -17.22 3.31 -811.78 -2.69 -19.91 16 8 C 0.09 2.21 5.18 86.73 0.45 2.66 16 9 C -0.10 -3.10 5.34 31.78 0.17 -2.93 16 10 C -0.10 -3.26 3.29 -9.40 -0.03 -3.30 16 11 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 12 C 0.17 6.40 5.20 86.38 0.45 6.84 16 13 N -0.62 -29.28 2.87 -726.95 -2.09 -31.37 16 14 C 0.14 6.70 8.93 127.77 1.14 7.84 16 15 C -0.35 -18.28 8.63 84.03 0.73 -17.56 16 16 H 0.07 3.47 7.51 -2.91 -0.02 3.45 16 17 C -0.07 -4.07 4.60 84.86 0.39 -3.68 16 18 N -0.94 -56.28 12.31 21.65 0.27 -56.01 16 19 Si 1.09 48.71 30.04 68.60 2.06 50.77 16 20 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 21 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 23 C 0.12 3.65 6.36 86.86 0.55 4.20 16 24 C -0.08 -1.73 4.29 30.59 0.13 -1.60 16 25 C -0.14 -2.97 5.63 30.59 0.17 -2.80 16 26 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 27 C -0.12 -2.20 5.70 30.60 0.17 -2.03 16 28 C -0.11 -1.75 4.59 30.60 0.14 -1.61 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 1.17 4.54 -2.38 -0.01 1.16 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.72 5.75 -2.38 -0.01 1.71 16 35 H 0.09 1.78 5.29 -2.39 -0.01 1.77 16 36 H 0.06 2.04 7.58 -2.39 -0.02 2.02 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.05 1.66 8.07 -2.39 -0.02 1.64 16 39 H 0.04 1.71 8.00 -2.39 -0.02 1.69 16 40 H -0.01 -0.49 6.95 -2.39 -0.02 -0.51 16 41 H 0.04 1.79 8.06 -2.38 -0.02 1.77 16 42 H 0.03 1.72 6.55 -2.39 -0.02 1.70 16 43 H 0.26 15.59 6.13 -92.71 -0.57 15.02 16 44 H 0.06 2.02 8.09 -2.39 -0.02 2.00 16 45 H 0.06 1.86 8.04 -2.39 -0.02 1.84 16 46 H 0.05 1.25 7.85 -2.39 -0.02 1.23 16 47 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 49 H 0.06 1.72 5.44 -2.39 -0.01 1.70 16 50 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 53 H 0.03 0.77 7.22 -2.39 -0.02 0.75 16 54 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 55 H 0.08 1.24 4.84 -2.39 -0.01 1.23 16 Total: -1.00 -69.48 401.07 3.70 -65.78 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 1.05 Total: 20.67 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 6.59 Total: 2.21 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -4.51 Total: -107.30 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.49 Total: -32.14 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 2.06 Total: 50.77 kcal Total: -69.48 3.70 -65.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753352357.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.939 kcal (2) G-P(sol) polarization free energy of solvation -69.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds