Wall clock time and date at job start Tue Mar 31 2020 22:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00141 * 2 1 4 4 C 1.52995 * 109.47368 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47176 * 305.42574 * 4 3 2 6 6 O 1.21287 * 119.99835 * 119.24021 * 5 4 3 7 7 N 1.34776 * 120.00275 * 299.23607 * 5 4 3 8 8 C 1.47029 * 125.64335 * 353.82078 * 7 5 4 9 9 C 1.54371 * 107.28392 * 178.94444 * 8 7 5 10 10 C 1.55154 * 102.92399 * 337.85901 * 9 8 7 11 11 H 1.09004 * 111.00747 * 277.36803 * 10 9 8 12 12 C 1.52992 * 111.00589 * 153.54842 * 10 9 8 13 13 N 1.46503 * 109.47382 * 69.58410 * 12 10 9 14 14 C 1.46493 * 120.00000 * 89.99832 * 13 12 10 15 15 C 1.36937 * 119.99585 * 270.00409 * 13 12 10 16 16 H 1.07994 * 120.00300 * 32.71812 * 15 13 12 17 17 C 1.38819 * 119.99588 * 212.71544 * 15 13 12 18 18 N 1.31621 * 119.99872 * 6.10723 * 17 15 13 19 19 Si 1.86795 * 119.99824 * 186.10872 * 17 15 13 20 20 H 1.48501 * 109.47055 * 89.99943 * 19 17 15 21 21 H 1.48500 * 109.46796 * 209.99661 * 19 17 15 22 22 H 1.48497 * 109.47501 * 329.99945 * 19 17 15 23 23 C 1.47420 * 125.65335 * 173.86223 * 7 5 4 24 24 C 1.53004 * 109.47014 * 65.42049 * 4 3 2 25 25 C 1.53000 * 109.47215 * 179.97438 * 24 4 3 26 26 C 1.52995 * 109.47929 * 300.00649 * 25 24 4 27 27 C 1.53004 * 109.46864 * 59.99173 * 26 25 24 28 28 C 1.52992 * 109.47598 * 300.00851 * 27 26 25 29 29 H 1.09003 * 109.46799 * 299.99114 * 1 2 3 30 30 H 1.08999 * 109.47648 * 59.99502 * 1 2 3 31 31 H 1.08997 * 109.47327 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46673 * 60.00927 * 3 2 1 33 33 H 1.08995 * 109.47488 * 300.00939 * 3 2 1 34 34 H 1.08998 * 109.88083 * 298.38847 * 8 7 5 35 35 H 1.08992 * 109.88032 * 59.40531 * 8 7 5 36 36 H 1.09001 * 110.75152 * 219.49609 * 9 8 7 37 37 H 1.09000 * 110.70274 * 96.20797 * 9 8 7 38 38 H 1.09001 * 109.47392 * 189.58506 * 12 10 9 39 39 H 1.09004 * 109.47337 * 309.58201 * 12 10 9 40 40 H 1.08997 * 109.47121 * 85.17205 * 14 13 12 41 41 H 1.09003 * 109.47476 * 205.17648 * 14 13 12 42 42 H 1.09005 * 109.47542 * 325.17393 * 14 13 12 43 43 H 0.97001 * 119.99764 * 180.02562 * 18 17 15 44 44 H 1.09007 * 110.36699 * 85.25109 * 23 7 5 45 45 H 1.08997 * 110.36338 * 322.93553 * 23 7 5 46 46 H 1.08997 * 109.47342 * 300.00482 * 24 4 3 47 47 H 1.09008 * 109.46534 * 60.00614 * 24 4 3 48 48 H 1.09000 * 109.47283 * 180.02562 * 25 24 4 49 49 H 1.09008 * 109.46483 * 60.01054 * 25 24 4 50 50 H 1.09007 * 109.46929 * 300.00161 * 26 25 24 51 51 H 1.08988 * 109.47480 * 179.97438 * 26 25 24 52 52 H 1.09005 * 109.46809 * 179.97438 * 27 26 25 53 53 H 1.09007 * 109.46541 * 60.00750 * 27 26 25 54 54 H 1.09007 * 109.47092 * 299.99562 * 28 27 26 55 55 H 1.09000 * 109.47359 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9716 0.3237 1.1568 6 8 4.5780 -0.7064 0.9516 7 7 3.6881 0.6986 2.4199 8 6 3.0776 1.9755 2.8182 9 6 2.9197 1.9493 4.3535 10 6 2.9304 0.4321 4.6776 11 1 1.9435 -0.0063 4.5287 12 6 3.4305 0.1788 6.1012 13 7 2.4333 0.6579 7.0616 14 6 1.3793 -0.2431 7.5340 15 6 2.4866 1.9480 7.5176 16 1 2.8467 2.7348 6.8714 17 6 2.0776 2.2445 8.8106 18 7 1.7530 1.2731 9.6373 19 14 1.9880 4.0222 9.3773 20 1 0.6360 4.5655 9.0908 21 1 2.2494 4.0899 10.8376 22 1 3.0072 4.8243 8.6542 23 6 3.9393 -0.1033 3.6312 24 6 3.9959 0.5464 -1.3128 25 6 5.5211 0.4262 -1.3137 26 6 6.1427 1.8176 -1.1776 27 6 5.6821 2.4557 0.1345 28 6 4.1569 2.5760 0.1354 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6886 1.8462 0.8902 33 1 1.6885 1.8464 -0.8898 34 1 3.7245 2.8027 2.5258 35 1 2.1016 2.0832 2.3452 36 1 1.9737 2.4008 4.6523 37 1 3.7578 2.4526 4.8357 38 1 3.5899 -0.8898 6.2456 39 1 4.3693 0.7104 6.2564 40 1 1.7514 -0.8282 8.3750 41 1 0.5164 0.3422 7.8520 42 1 1.0856 -0.9138 6.7265 43 1 1.4669 1.4803 10.5406 44 1 4.9616 0.0452 3.9792 45 1 3.7551 -1.1590 3.4320 46 1 3.5528 -0.4447 -1.4099 47 1 3.6804 1.1692 -2.1500 48 1 5.8492 -0.0280 -2.2487 49 1 5.8370 -0.1964 -0.4765 50 1 5.8267 2.4401 -2.0149 51 1 7.2292 1.7318 -1.1779 52 1 6.1253 3.4469 0.2317 53 1 5.9980 1.8332 0.9717 54 1 3.8410 3.1985 -0.7018 55 1 3.8289 3.0310 1.0700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753352358.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:07 Heat of formation + Delta-G solvation = -79.788890 kcal Electronic energy + Delta-G solvation = -32241.714803 eV Core-core repulsion = 28278.437211 eV Total energy + Delta-G solvation = -3963.277592 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.09812 -39.58040 -38.59383 -37.79669 -37.04627 -34.15184 -33.15490 -32.08658 -31.46268 -30.32299 -28.04834 -27.92242 -27.22099 -26.06588 -25.06220 -23.66543 -23.02735 -22.51896 -21.54668 -21.04830 -19.71333 -18.71088 -17.74487 -17.35355 -17.22289 -16.89261 -16.76066 -16.65540 -15.93364 -15.74575 -15.30320 -15.11751 -15.03833 -14.83829 -14.56362 -14.52425 -14.43761 -14.04394 -13.76046 -13.54206 -13.37316 -13.11826 -13.00610 -12.87950 -12.82271 -12.76996 -12.69564 -12.59763 -12.31161 -12.20661 -12.14135 -12.00490 -11.90248 -11.79701 -11.59413 -11.54091 -11.36301 -11.07572 -10.88178 -10.60686 -10.54695 -10.39748 -9.53383 -8.57918 -7.79660 -5.35619 1.50343 1.51002 1.59669 1.70563 2.03616 2.54386 2.75483 3.34977 3.37130 3.53063 3.73528 3.75708 3.77649 3.90813 3.98242 4.07794 4.19026 4.21814 4.32320 4.33769 4.37867 4.45782 4.50837 4.52295 4.53674 4.59030 4.63286 4.63828 4.70315 4.76832 4.84412 4.88493 4.89461 4.90072 4.92937 5.02128 5.06751 5.12118 5.16298 5.22820 5.27856 5.29385 5.31195 5.37200 5.42105 5.47287 5.51858 5.62591 5.66094 5.74396 6.19931 6.44401 6.63487 7.21846 7.24503 7.90098 8.41591 9.25691 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.002992 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.486674 B = 9357.410372 C = 9776.671546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.414 6.414 3 C 0.060 3.940 4 C -0.066 4.066 5 C 0.547 3.453 6 O -0.578 6.578 7 N -0.615 5.615 8 C 0.093 3.907 9 C -0.107 4.107 10 C -0.102 4.102 11 H 0.064 0.936 12 C 0.162 3.838 13 N -0.612 5.612 14 C 0.176 3.824 15 C -0.254 4.254 16 H 0.080 0.920 17 C -0.052 4.052 18 N -0.942 5.942 19 Si 0.965 3.035 20 H -0.286 1.286 21 H -0.301 1.301 22 H -0.262 1.262 23 C 0.119 3.881 24 C -0.084 4.084 25 C -0.134 4.134 26 C -0.114 4.114 27 C -0.121 4.121 28 C -0.119 4.119 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.038 0.962 39 H 0.048 0.952 40 H -0.007 1.007 41 H 0.025 0.975 42 H 0.020 0.980 43 H 0.246 0.754 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.047 0.953 47 H 0.090 0.910 48 H 0.064 0.936 49 H 0.055 0.945 50 H 0.082 0.918 51 H 0.060 0.940 52 H 0.086 0.914 53 H 0.033 0.967 54 H 0.105 0.895 55 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.621 5.424 -24.810 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.334 6.334 3 C -0.016 4.016 4 C -0.069 4.069 5 C 0.337 3.663 6 O -0.458 6.458 7 N -0.348 5.348 8 C -0.029 4.029 9 C -0.145 4.145 10 C -0.123 4.123 11 H 0.082 0.918 12 C 0.036 3.964 13 N -0.335 5.335 14 C 0.031 3.969 15 C -0.384 4.384 16 H 0.097 0.903 17 C -0.247 4.247 18 N -0.588 5.588 19 Si 0.793 3.207 20 H -0.212 1.212 21 H -0.228 1.228 22 H -0.187 1.187 23 C -0.005 4.005 24 C -0.122 4.122 25 C -0.172 4.172 26 C -0.151 4.151 27 C -0.158 4.158 28 C -0.156 4.156 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.011 0.989 41 H 0.044 0.956 42 H 0.039 0.961 43 H 0.055 0.945 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.109 0.891 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.100 0.900 51 H 0.078 0.922 52 H 0.105 0.895 53 H 0.051 0.949 54 H 0.124 0.876 55 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.015 4.696 -24.827 25.347 hybrid contribution -0.429 0.275 1.222 1.324 sum 1.586 4.972 -23.605 24.175 Atomic orbital electron populations 1.22864 0.79527 1.03373 1.00983 1.87924 1.21346 1.28533 1.95603 1.22886 0.90731 0.85201 1.02777 1.20904 0.95184 0.97068 0.93721 1.20505 0.77420 0.85550 0.82806 1.90585 1.42691 1.27931 1.84610 1.48541 1.61559 1.19311 1.05353 1.22695 0.98802 0.85675 0.95686 1.22513 1.02963 0.95895 0.93168 1.22783 0.97968 0.96435 0.95156 0.91777 1.20720 0.91444 0.96889 0.87373 1.43961 1.29325 1.10189 1.49983 1.20480 0.90804 0.91830 0.93816 1.19554 1.39252 0.85401 0.94228 0.90291 1.26061 1.01655 1.00818 0.96173 1.70191 1.50718 1.31974 1.05922 0.85303 0.78097 0.80590 0.76689 1.21241 1.22832 1.18676 1.22084 0.98947 0.95159 0.84300 1.21280 0.96011 1.00314 0.94579 1.21748 0.95315 0.98083 1.02040 1.21525 0.99970 0.95747 0.97862 1.21538 0.95376 1.01404 0.97517 1.21917 0.95499 0.92877 1.05305 0.93751 0.92031 0.89621 0.91391 0.89582 0.88613 0.90017 0.90496 0.91051 0.94342 0.93396 0.98878 0.95642 0.96143 0.94463 0.91705 0.92507 0.93457 0.89123 0.91752 0.92678 0.89966 0.92160 0.89538 0.94855 0.87627 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -9.89 9.72 -148.98 -1.45 -11.33 16 3 C 0.06 1.08 4.60 71.98 0.33 1.42 16 4 C -0.07 -1.34 0.34 -52.93 -0.02 -1.36 16 5 C 0.55 15.90 4.56 87.66 0.40 16.30 16 6 O -0.58 -21.46 14.00 -3.05 -0.04 -21.50 16 7 N -0.61 -17.07 3.31 -811.69 -2.69 -19.76 16 8 C 0.09 2.08 5.27 86.74 0.46 2.54 16 9 C -0.11 -3.07 5.06 31.80 0.16 -2.91 16 10 C -0.10 -3.32 3.27 -9.40 -0.03 -3.35 16 11 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 12 C 0.16 6.39 5.22 86.38 0.45 6.84 16 13 N -0.61 -29.50 2.86 -726.95 -2.08 -31.58 16 14 C 0.18 8.65 9.00 127.77 1.15 9.80 16 15 C -0.25 -13.07 9.06 84.04 0.76 -12.31 16 16 H 0.08 3.80 6.66 -2.91 -0.02 3.78 16 17 C -0.05 -2.82 5.16 84.86 0.44 -2.38 16 18 N -0.94 -55.25 11.04 21.65 0.24 -55.01 16 19 Si 0.96 43.28 29.56 68.60 2.03 45.30 16 20 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 C 0.12 3.67 6.36 86.86 0.55 4.22 16 24 C -0.08 -1.74 4.27 30.60 0.13 -1.61 16 25 C -0.13 -2.91 5.63 30.59 0.17 -2.74 16 26 C -0.11 -1.85 5.92 30.59 0.18 -1.67 16 27 C -0.12 -2.04 5.70 30.59 0.17 -1.86 16 28 C -0.12 -1.74 4.51 30.59 0.14 -1.60 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.13 4.89 -2.38 -0.01 1.12 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.72 5.67 -2.39 -0.01 1.71 16 35 H 0.08 1.60 5.27 -2.39 -0.01 1.59 16 36 H 0.08 2.35 8.14 -2.39 -0.02 2.34 16 37 H 0.07 2.12 7.63 -2.39 -0.02 2.11 16 38 H 0.04 1.49 8.07 -2.39 -0.02 1.47 16 39 H 0.05 1.90 7.94 -2.39 -0.02 1.88 16 40 H -0.01 -0.38 7.74 -2.39 -0.02 -0.40 16 41 H 0.02 1.33 7.17 -2.39 -0.02 1.31 16 42 H 0.02 0.87 8.11 -2.38 -0.02 0.85 16 43 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.06 1.99 8.04 -2.38 -0.02 1.97 16 45 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 46 H 0.05 1.24 7.78 -2.39 -0.02 1.22 16 47 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 48 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.05 1.62 5.54 -2.38 -0.01 1.61 16 50 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 51 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 53 H 0.03 0.76 7.22 -2.38 -0.02 0.74 16 54 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 55 H 0.09 1.20 4.23 -2.39 -0.01 1.19 16 Total: -1.00 -69.37 402.83 3.56 -65.81 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.85 Total: 17.01 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 6.70 Total: 11.06 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -4.53 Total: -106.35 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -1.49 Total: -32.84 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -69.37 3.56 -65.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753352358.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.979 kcal (2) G-P(sol) polarization free energy of solvation -69.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds