Wall clock time and date at job start Tue Mar 31 2020 22:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 113.99593 * 2 1 4 4 C 1.53007 * 109.46790 * 179.97438 * 3 2 1 5 5 C 1.50699 * 110.43118 * 305.49420 * 4 3 2 6 6 O 1.21282 * 119.99612 * 122.17322 * 5 4 3 7 7 N 1.34771 * 120.00612 * 302.17189 * 5 4 3 8 8 C 1.46925 * 120.62808 * 354.55965 * 7 5 4 9 9 C 1.53201 * 108.77584 * 233.62898 * 8 7 5 10 10 C 1.53048 * 109.30807 * 305.36530 * 9 8 7 11 11 C 1.53043 * 109.54065 * 61.36354 * 10 9 8 12 12 H 1.08997 * 109.52017 * 58.59882 * 11 10 9 13 13 C 1.52993 * 109.49430 * 178.68184 * 11 10 9 14 14 C 1.52995 * 109.47413 * 294.83640 * 13 11 10 15 15 N 1.46502 * 109.47299 * 180.02562 * 14 13 11 16 16 C 1.36932 * 120.00367 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00528 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99366 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00317 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47141 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47083 * 120.00006 * 20 18 16 23 23 H 1.48500 * 109.47147 * 240.00082 * 20 18 16 24 24 C 1.46923 * 120.63478 * 174.57681 * 7 5 4 25 25 C 1.54889 * 110.60207 * 68.11686 * 4 3 2 26 26 C 1.54881 * 102.74633 * 156.67617 * 25 4 3 27 27 C 1.54261 * 104.20167 * 322.05630 * 26 25 4 28 28 C 1.53880 * 106.59683 * 23.60939 * 27 26 25 29 29 H 1.08994 * 109.46772 * 60.00472 * 1 2 3 30 30 H 1.09000 * 109.46792 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47658 * 300.00496 * 1 2 3 32 32 H 1.09000 * 109.47545 * 59.99775 * 3 2 1 33 33 H 1.09001 * 109.47019 * 299.99336 * 3 2 1 34 34 H 1.09002 * 109.59082 * 353.40995 * 8 7 5 35 35 H 1.09000 * 109.59166 * 113.69626 * 8 7 5 36 36 H 1.09000 * 109.49912 * 65.30985 * 9 8 7 37 37 H 1.08994 * 109.49541 * 185.38074 * 9 8 7 38 38 H 1.09007 * 109.45813 * 301.34162 * 10 9 8 39 39 H 1.08992 * 109.45703 * 181.38623 * 10 9 8 40 40 H 1.09007 * 109.46561 * 174.83643 * 13 11 10 41 41 H 1.09001 * 109.47181 * 54.84387 * 13 11 10 42 42 H 1.08998 * 109.47172 * 60.00254 * 14 13 11 43 43 H 1.08993 * 109.47247 * 300.00512 * 14 13 11 44 44 H 0.97006 * 120.00008 * 359.97438 * 15 14 13 45 45 H 0.97005 * 119.99237 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.58684 * 6.58221 * 24 7 5 47 47 H 1.09003 * 109.70677 * 246.23139 * 24 7 5 48 48 H 1.09000 * 110.75069 * 274.98907 * 25 4 3 49 49 H 1.09001 * 110.75227 * 38.35658 * 25 4 3 50 50 H 1.09010 * 110.48111 * 203.37799 * 26 25 4 51 51 H 1.09003 * 110.60006 * 80.79535 * 26 25 4 52 52 H 1.09005 * 110.03507 * 264.33579 * 27 26 25 53 53 H 1.08994 * 110.03747 * 142.89389 * 27 26 25 54 54 H 1.09000 * 110.03677 * 240.71898 * 28 27 26 55 55 H 1.09001 * 110.03042 * 119.28195 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9947 0.3260 1.1508 6 8 4.6540 -0.6696 0.9386 7 7 3.6728 0.6643 2.4150 8 6 2.9780 1.9276 2.6980 9 6 3.7760 2.7043 3.7502 10 6 3.9920 1.8168 4.9783 11 6 4.7967 0.5777 4.5792 12 1 5.7531 0.8851 4.1564 13 6 5.0401 -0.2924 5.8139 14 6 5.9308 0.4628 6.8025 15 7 6.1644 -0.3707 7.9845 16 6 6.9384 0.0994 9.0116 17 1 7.3771 1.0844 8.9501 18 6 7.1594 -0.6901 10.1318 19 7 6.6252 -1.8907 10.2064 20 14 8.2147 -0.0485 11.5331 21 1 8.6933 1.3188 11.2066 22 1 7.4093 -0.0059 12.7800 23 1 9.3801 -0.9483 11.7272 24 6 4.0102 -0.2229 3.5364 25 6 4.0367 0.6028 -1.3444 26 6 5.4997 1.1066 -1.4107 27 6 5.4366 2.5311 -0.8221 28 6 4.1875 2.5809 0.0753 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6885 1.8465 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 2.9066 2.5181 1.7845 35 1 1.9777 1.7178 3.0765 36 1 4.7419 2.9921 3.3350 37 1 3.2233 3.5981 4.0393 38 1 3.0258 1.5091 5.3783 39 1 4.5383 2.3753 5.7383 40 1 5.5325 -1.2178 5.5148 41 1 4.0867 -0.5251 6.2882 42 1 5.4384 1.3881 7.1015 43 1 6.8841 0.6954 6.3282 44 1 5.7701 -1.2552 8.0399 45 1 6.7793 -2.4422 10.9894 46 1 4.6198 -1.0516 3.1761 47 1 3.0962 -0.6104 3.9864 48 1 4.0035 -0.4866 -1.3301 49 1 3.4541 0.9973 -2.1769 50 1 5.8467 1.1356 -2.4437 51 1 6.1511 0.4734 -0.8082 52 1 5.3488 3.2633 -1.6249 53 1 6.3297 2.7305 -0.2302 54 1 3.4937 3.3371 -0.2920 55 1 4.4747 2.8044 1.1027 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753547410.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:34 Heat of formation + Delta-G solvation = -104.776756 kcal Electronic energy + Delta-G solvation = -31324.174976 eV Core-core repulsion = 27359.813830 eV Total energy + Delta-G solvation = -3964.361147 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.07311 -39.58485 -38.58765 -37.68609 -36.98049 -35.08779 -33.22466 -32.58801 -31.70519 -29.80503 -28.96651 -27.59517 -26.77570 -25.86825 -25.22714 -23.72599 -23.23420 -22.17786 -21.44184 -20.96327 -19.63435 -19.11640 -18.07417 -17.40392 -16.96077 -16.79702 -16.66963 -16.47648 -16.09616 -15.92336 -15.80978 -15.49262 -15.24899 -15.00111 -14.84652 -14.57640 -14.29010 -14.14725 -14.06178 -13.88978 -13.42615 -13.18340 -12.94913 -12.90081 -12.56815 -12.46825 -12.42708 -12.39324 -12.23887 -12.10048 -12.02075 -11.98135 -11.92436 -11.79649 -11.72748 -11.66142 -11.43051 -11.32794 -11.26027 -10.93688 -10.72450 -10.39767 -9.59830 -9.02399 -7.97491 -5.27180 1.45557 1.47294 1.57454 1.66886 1.97824 2.54488 2.74905 3.32339 3.36084 3.56816 3.62427 3.69844 3.78900 3.86170 3.98833 4.00421 4.12112 4.21975 4.26974 4.32600 4.37485 4.46778 4.48755 4.51214 4.53108 4.55728 4.57571 4.60069 4.64706 4.70824 4.74339 4.77131 4.83860 4.85819 4.87741 4.88649 4.90883 5.00095 5.06482 5.08578 5.15145 5.21546 5.24042 5.31657 5.33497 5.42481 5.46314 5.48357 5.50952 5.56603 6.22863 6.25135 6.47167 7.22086 7.30452 8.06602 8.29883 9.26661 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019036 B = 0.002256 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.575379 B =12409.655265 C =12792.441720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.064 3.936 4 C -0.081 4.081 5 C 0.531 3.469 6 O -0.587 6.587 7 N -0.606 5.606 8 C 0.090 3.910 9 C -0.129 4.129 10 C -0.116 4.116 11 C -0.081 4.081 12 H 0.060 0.940 13 C -0.108 4.108 14 C 0.156 3.844 15 N -0.750 5.750 16 C -0.246 4.246 17 H 0.076 0.924 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.977 3.023 21 H -0.264 1.264 22 H -0.290 1.290 23 H -0.293 1.293 24 C 0.122 3.878 25 C -0.093 4.093 26 C -0.129 4.129 27 C -0.121 4.121 28 C -0.116 4.116 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.032 0.968 43 H 0.010 0.990 44 H 0.372 0.628 45 H 0.252 0.748 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.046 0.954 49 H 0.097 0.903 50 H 0.080 0.920 51 H 0.036 0.964 52 H 0.093 0.907 53 H 0.057 0.943 54 H 0.115 0.885 55 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.057 15.648 -27.856 35.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C -0.012 4.012 4 C -0.084 4.084 5 C 0.321 3.679 6 O -0.467 6.467 7 N -0.338 5.338 8 C -0.031 4.031 9 C -0.167 4.167 10 C -0.153 4.153 11 C -0.101 4.101 12 H 0.079 0.921 13 C -0.146 4.146 14 C 0.030 3.970 15 N -0.393 5.393 16 C -0.378 4.378 17 H 0.094 0.906 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.806 3.194 21 H -0.189 1.189 22 H -0.217 1.217 23 H -0.220 1.220 24 C -0.001 4.001 25 C -0.131 4.131 26 C -0.167 4.167 27 C -0.159 4.159 28 C -0.153 4.153 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.050 0.950 43 H 0.028 0.972 44 H 0.204 0.796 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.091 0.909 48 H 0.065 0.935 49 H 0.115 0.885 50 H 0.098 0.902 51 H 0.055 0.945 52 H 0.111 0.889 53 H 0.075 0.925 54 H 0.133 0.867 55 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.506 15.120 -27.895 34.888 hybrid contribution 0.612 -0.885 1.283 1.674 sum -13.894 14.235 -26.612 33.225 Atomic orbital electron populations 1.22879 0.79372 1.03324 1.01241 1.87951 1.21494 1.28646 1.95645 1.23012 0.89665 0.85251 1.03273 1.21735 0.95786 0.97027 0.93853 1.20823 0.77889 0.85041 0.84181 1.90641 1.41136 1.30018 1.84898 1.48063 1.58306 1.21987 1.05435 1.22435 0.95900 0.83735 1.01035 1.21944 1.01224 0.98771 0.94737 1.21625 1.00201 0.95198 0.98301 1.21275 0.98913 0.96156 0.93770 0.92127 1.21559 0.99695 0.98263 0.95104 1.20798 0.95843 0.93749 0.86603 1.42660 1.60517 1.18121 1.17978 1.19695 1.22190 0.99720 0.96195 0.90593 1.25650 1.03099 0.96892 1.01485 1.69843 1.50733 1.11054 1.30625 0.85017 0.77726 0.77799 0.78883 1.18874 1.21695 1.22029 1.21457 0.99459 0.92723 0.86429 1.22331 0.96145 0.99982 0.94646 1.22368 0.96426 0.96588 1.01274 1.22143 0.97428 0.96788 0.99496 1.22467 0.97991 0.93204 1.01643 0.92223 0.89919 0.92975 0.90396 0.89441 0.86505 0.90101 0.91725 0.87683 0.91160 0.91649 0.93306 0.91596 0.95048 0.97229 0.79602 0.93936 0.92012 0.90888 0.93466 0.88488 0.90158 0.94465 0.88867 0.92451 0.86654 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.42 -7.88 10.09 -148.98 -1.50 -9.39 16 3 C 0.06 0.79 4.38 71.98 0.32 1.11 16 4 C -0.08 -1.37 0.35 -51.85 -0.02 -1.39 16 5 C 0.53 13.92 5.82 87.66 0.51 14.43 16 6 O -0.59 -21.36 14.50 -3.03 -0.04 -21.41 16 7 N -0.61 -13.72 2.96 -818.90 -2.43 -16.15 16 8 C 0.09 1.24 3.96 86.37 0.34 1.58 16 9 C -0.13 -1.83 5.95 30.68 0.18 -1.65 16 10 C -0.12 -2.46 4.96 30.62 0.15 -2.31 16 11 C -0.08 -2.20 2.34 -10.72 -0.03 -2.22 16 12 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 13 C -0.11 -3.68 4.80 30.59 0.15 -3.53 16 14 C 0.16 6.52 6.02 86.38 0.52 7.04 16 15 N -0.75 -40.24 5.60 -343.47 -1.92 -42.17 16 16 C -0.25 -14.29 9.99 84.03 0.84 -13.46 16 17 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 18 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 19 N -0.97 -61.39 13.06 21.65 0.28 -61.11 16 20 Si 0.98 47.16 29.55 68.60 2.03 49.19 16 21 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 24 C 0.12 3.31 5.72 86.36 0.49 3.81 16 25 C -0.09 -1.73 5.40 31.88 0.17 -1.56 16 26 C -0.13 -2.33 6.52 31.66 0.21 -2.12 16 27 C -0.12 -1.54 6.80 31.32 0.21 -1.33 16 28 C -0.12 -1.26 4.57 31.32 0.14 -1.11 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.08 0.68 5.15 -2.39 -0.01 0.66 16 33 H 0.09 0.61 8.07 -2.39 -0.02 0.59 16 34 H 0.12 1.02 3.12 -2.39 -0.01 1.01 16 35 H 0.08 0.94 8.11 -2.39 -0.02 0.92 16 36 H 0.06 0.99 7.73 -2.39 -0.02 0.97 16 37 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.06 1.54 6.51 -2.39 -0.02 1.52 16 40 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.03 1.26 6.54 -2.39 -0.02 1.25 16 43 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.37 21.24 7.67 -92.70 -0.71 20.53 16 45 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 46 H 0.06 2.04 7.00 -2.38 -0.02 2.03 16 47 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.05 1.22 7.42 -2.39 -0.02 1.20 16 49 H 0.10 1.25 8.01 -2.39 -0.02 1.24 16 50 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 51 H 0.04 0.93 7.63 -2.39 -0.02 0.92 16 52 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 53 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 54 H 0.12 0.44 7.84 -2.39 -0.02 0.42 16 55 H 0.08 0.91 5.44 -2.39 -0.01 0.89 16 Total: -1.00 -78.94 409.40 2.47 -76.46 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.15 Total: 29.93 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 5.91 Total: -5.37 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -4.07 Total: -119.42 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.55 Total: -30.79 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -78.94 2.47 -76.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753547410.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.312 kcal (2) G-P(sol) polarization free energy of solvation -78.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds