Wall clock time and date at job start Tue Mar 31 2020 22:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00442 * 2 1 4 4 C 1.53000 * 109.46975 * 180.02562 * 3 2 1 5 5 C 1.50702 * 110.43522 * 296.45508 * 4 3 2 6 6 O 1.21275 * 119.99859 * 117.69119 * 5 4 3 7 7 N 1.34774 * 119.99800 * 297.97819 * 5 4 3 8 8 C 1.46929 * 120.63462 * 354.86311 * 7 5 4 9 9 C 1.53185 * 108.77531 * 126.37275 * 8 7 5 10 10 C 1.53043 * 109.31327 * 54.63674 * 9 8 7 11 11 C 1.53037 * 109.53688 * 298.63512 * 10 9 8 12 12 H 1.08999 * 109.50076 * 301.37493 * 11 10 9 13 13 C 1.53006 * 109.49886 * 181.31847 * 11 10 9 14 14 C 1.53001 * 109.47208 * 64.99262 * 13 11 10 15 15 N 1.46494 * 109.46997 * 180.02562 * 14 13 11 16 16 C 1.36935 * 120.00110 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99677 * 0.02562 * 16 15 14 18 18 C 1.38818 * 120.00272 * 180.02562 * 16 15 14 19 19 N 1.31612 * 119.99737 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99977 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47089 * 59.99769 * 20 18 16 22 22 H 1.48497 * 109.47222 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47311 * 299.99986 * 20 18 16 24 24 C 1.46927 * 120.62812 * 174.59239 * 7 5 4 25 25 C 1.54881 * 110.48981 * 58.99997 * 4 3 2 26 26 C 1.55233 * 102.59011 * 156.67579 * 25 4 3 27 27 C 1.54273 * 104.23237 * 322.08202 * 26 25 4 28 28 C 1.53873 * 106.59398 * 23.61235 * 27 26 25 29 29 H 1.09006 * 109.46880 * 300.00483 * 1 2 3 30 30 H 1.09003 * 109.46684 * 59.99826 * 1 2 3 31 31 H 1.08995 * 109.47569 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46915 * 59.99659 * 3 2 1 33 33 H 1.09004 * 109.46656 * 299.99750 * 3 2 1 34 34 H 1.09004 * 109.58332 * 246.16075 * 8 7 5 35 35 H 1.08999 * 109.58409 * 6.44128 * 8 7 5 36 36 H 1.09003 * 109.50174 * 174.58782 * 9 8 7 37 37 H 1.09004 * 109.50220 * 294.68649 * 9 8 7 38 38 H 1.08999 * 109.46012 * 58.65925 * 10 9 8 39 39 H 1.09004 * 109.46129 * 178.61480 * 10 9 8 40 40 H 1.08996 * 109.47637 * 185.00427 * 13 11 10 41 41 H 1.09006 * 109.46401 * 305.00115 * 13 11 10 42 42 H 1.08998 * 109.47371 * 300.00738 * 14 13 11 43 43 H 1.09006 * 109.46743 * 60.01063 * 14 13 11 44 44 H 0.96995 * 120.00465 * 0.02562 * 15 14 13 45 45 H 0.97003 * 119.99739 * 180.02562 * 19 18 16 46 46 H 1.08999 * 109.58642 * 353.41097 * 24 7 5 47 47 H 1.09000 * 109.59108 * 113.84105 * 24 7 5 48 48 H 1.08999 * 110.75977 * 275.06689 * 25 4 3 49 49 H 1.09006 * 110.75715 * 38.43558 * 25 4 3 50 50 H 1.09003 * 110.47006 * 203.39790 * 26 25 4 51 51 H 1.09000 * 110.47418 * 80.77425 * 26 25 4 52 52 H 1.08996 * 110.03327 * 264.32836 * 27 26 25 53 53 H 1.08998 * 110.03138 * 142.89431 * 27 26 25 54 54 H 1.09003 * 110.03292 * 240.71615 * 28 27 26 55 55 H 1.08996 * 110.03463 * 119.28443 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 6 4.0108 0.5155 1.2633 6 8 4.5979 -0.5441 1.2047 7 7 3.7783 1.0918 2.4592 8 6 3.1636 2.4238 2.5415 9 6 1.9387 2.3458 3.4582 10 6 2.3546 1.7609 4.8099 11 6 2.8987 0.3447 4.6092 12 1 2.1339 -0.2763 4.1428 13 6 3.2836 -0.2515 5.9647 14 6 2.0283 -0.4183 6.8235 15 7 2.3970 -0.9885 8.1215 16 6 1.4318 -1.2294 9.0625 17 1 0.3986 -0.9994 8.8475 18 6 1.7811 -1.7692 10.2928 19 7 3.0400 -2.0500 10.5546 20 14 0.4642 -2.0986 11.5761 21 1 -0.5284 -3.0595 11.0315 22 1 1.0919 -2.6726 12.7934 23 1 -0.2178 -0.8260 11.9234 24 6 4.1294 0.3976 3.7057 25 6 4.0164 0.3969 -1.2446 26 6 5.4811 0.8844 -1.4083 27 6 5.4243 2.3836 -1.0488 28 6 4.1873 2.5743 -0.1538 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8463 -0.8901 34 1 3.8824 3.1333 2.9516 35 1 2.8580 2.7472 1.5465 36 1 1.5296 3.3454 3.6047 37 1 1.1830 1.7062 3.0021 38 1 3.1279 2.3875 5.2542 39 1 1.4898 1.7271 5.4725 40 1 3.7528 -1.2237 5.8142 41 1 3.9830 0.4152 6.4693 42 1 1.5593 0.5540 6.9740 43 1 1.3289 -1.0849 6.3189 44 1 3.3247 -1.1954 8.3146 45 1 3.2841 -2.4275 11.4142 46 1 4.4584 -0.6164 3.4789 47 1 4.9284 0.9385 4.2127 48 1 3.9824 -0.6766 -1.0591 49 1 3.4221 0.6577 -2.1204 50 1 5.8143 0.7514 -2.4376 51 1 6.1391 0.3521 -0.7215 52 1 5.3253 2.9813 -1.9549 53 1 6.3251 2.6720 -0.5072 54 1 3.4879 3.2646 -0.6255 55 1 4.4877 2.9554 0.8222 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753547411.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:38 Heat of formation + Delta-G solvation = -103.922888 kcal Electronic energy + Delta-G solvation = -31436.378940 eV Core-core repulsion = 27472.054820 eV Total energy + Delta-G solvation = -3964.324120 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.09661 -39.59005 -38.63225 -37.66549 -36.98907 -35.09613 -33.21460 -32.64462 -31.69110 -29.81406 -28.96016 -27.60722 -26.76028 -25.86621 -25.24909 -23.71636 -23.33088 -22.17243 -21.39668 -20.92823 -19.63962 -19.11454 -18.00232 -17.42024 -17.08455 -16.88347 -16.75278 -16.33924 -16.18574 -15.89582 -15.70873 -15.47240 -15.30656 -15.07682 -14.87145 -14.46517 -14.31083 -14.20904 -14.09803 -13.88188 -13.30085 -13.17817 -12.99407 -12.85238 -12.57767 -12.49361 -12.48697 -12.37467 -12.25882 -12.14698 -12.06823 -11.96932 -11.88840 -11.79586 -11.72806 -11.63653 -11.43855 -11.31516 -11.27715 -10.92092 -10.75373 -10.39798 -9.62398 -9.02549 -7.97127 -5.26957 1.45281 1.49373 1.55580 1.62993 1.97671 2.54695 2.72887 3.33372 3.36031 3.58432 3.62930 3.68677 3.78114 3.86451 3.96248 4.01795 4.08630 4.21904 4.25805 4.32623 4.36229 4.46327 4.48178 4.51243 4.51959 4.55053 4.56958 4.57533 4.62812 4.71631 4.73693 4.76376 4.84271 4.84882 4.86549 4.88492 4.93157 5.00878 5.07454 5.09158 5.14456 5.21109 5.24692 5.30356 5.34202 5.42196 5.45535 5.48452 5.49749 5.55650 6.21247 6.25077 6.45171 7.20104 7.30512 8.06751 8.30147 9.26571 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019536 B = 0.002309 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.906928 B =12125.492711 C =12526.238340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.416 6.416 3 C 0.063 3.937 4 C -0.081 4.081 5 C 0.529 3.471 6 O -0.585 6.585 7 N -0.608 5.608 8 C 0.089 3.911 9 C -0.130 4.130 10 C -0.115 4.115 11 C -0.081 4.081 12 H 0.057 0.943 13 C -0.107 4.107 14 C 0.157 3.843 15 N -0.750 5.750 16 C -0.250 4.250 17 H 0.076 0.924 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.978 3.022 21 H -0.278 1.278 22 H -0.294 1.294 23 H -0.274 1.274 24 C 0.122 3.878 25 C -0.093 4.093 26 C -0.129 4.129 27 C -0.120 4.120 28 C -0.116 4.116 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.032 0.968 43 H 0.008 0.992 44 H 0.373 0.627 45 H 0.252 0.748 46 H 0.060 0.940 47 H 0.076 0.924 48 H 0.045 0.955 49 H 0.093 0.907 50 H 0.079 0.921 51 H 0.038 0.962 52 H 0.092 0.908 53 H 0.062 0.938 54 H 0.113 0.887 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 17.821 -29.633 34.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.336 6.336 3 C -0.013 4.013 4 C -0.084 4.084 5 C 0.318 3.682 6 O -0.465 6.465 7 N -0.340 5.340 8 C -0.032 4.032 9 C -0.168 4.168 10 C -0.153 4.153 11 C -0.101 4.101 12 H 0.075 0.925 13 C -0.146 4.146 14 C 0.030 3.970 15 N -0.392 5.392 16 C -0.381 4.381 17 H 0.094 0.906 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.806 3.194 21 H -0.204 1.204 22 H -0.220 1.220 23 H -0.200 1.200 24 C -0.001 4.001 25 C -0.131 4.131 26 C -0.166 4.166 27 C -0.157 4.157 28 C -0.154 4.154 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.026 0.974 44 H 0.204 0.796 45 H 0.061 0.939 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.064 0.936 49 H 0.111 0.889 50 H 0.098 0.902 51 H 0.057 0.943 52 H 0.110 0.890 53 H 0.081 0.919 54 H 0.131 0.869 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.307 17.120 -29.605 34.224 hybrid contribution -0.226 -1.068 1.393 1.770 sum -1.533 16.052 -28.212 32.495 Atomic orbital electron populations 1.22873 0.79524 1.03303 1.01143 1.87951 1.21318 1.28670 1.95626 1.23020 0.90001 0.85248 1.03065 1.21722 0.95464 0.98535 0.92692 1.20869 0.77617 0.84263 0.85443 1.90641 1.43668 1.24913 1.87282 1.48114 1.61467 1.19498 1.04894 1.22472 0.95509 0.82627 1.02641 1.21963 0.97260 1.02912 0.94692 1.21616 1.01460 0.94200 0.97973 1.21188 0.97099 0.98063 0.93769 0.92459 1.21558 0.97592 1.00484 0.94951 1.20791 0.95553 0.95567 0.85045 1.42635 1.07183 1.76242 1.13182 1.19623 0.90317 1.33840 0.94340 0.90645 1.25651 0.98502 1.02519 1.00353 1.69822 1.17407 1.51081 1.23881 0.85154 0.78059 0.78141 0.78071 1.20441 1.21994 1.19963 1.21387 0.96785 0.97732 0.84179 1.22350 0.96314 0.98913 0.95499 1.22438 0.96152 0.96524 1.01512 1.22143 0.97600 0.95597 1.00405 1.22532 0.98085 0.92830 1.01923 0.93439 0.91906 0.89977 0.90882 0.89214 0.89275 0.86595 0.87630 0.92210 0.90895 0.91730 0.93320 0.91438 0.95059 0.97367 0.79587 0.93907 0.92094 0.90556 0.93577 0.88854 0.90185 0.94283 0.88989 0.91927 0.86870 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.64 16 2 O -0.42 -8.76 10.11 -148.98 -1.51 -10.26 16 3 C 0.06 0.88 4.40 71.98 0.32 1.20 16 4 C -0.08 -1.39 0.34 -51.85 -0.02 -1.41 16 5 C 0.53 13.81 6.04 87.66 0.53 14.34 16 6 O -0.59 -21.25 14.68 -3.02 -0.04 -21.30 16 7 N -0.61 -13.56 2.97 -819.74 -2.43 -15.99 16 8 C 0.09 1.18 3.94 86.36 0.34 1.52 16 9 C -0.13 -1.85 5.81 30.67 0.18 -1.68 16 10 C -0.11 -2.43 4.95 30.62 0.15 -2.27 16 11 C -0.08 -2.20 2.32 -10.86 -0.03 -2.23 16 12 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 13 C -0.11 -3.66 4.80 30.60 0.15 -3.51 16 14 C 0.16 6.54 6.02 86.38 0.52 7.06 16 15 N -0.75 -40.21 5.60 -343.45 -1.92 -42.13 16 16 C -0.25 -14.48 9.99 84.04 0.84 -13.64 16 17 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 18 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 19 N -0.97 -61.27 13.06 21.65 0.28 -60.99 16 20 Si 0.98 47.05 29.55 68.60 2.03 49.08 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 24 C 0.12 3.26 5.67 86.22 0.49 3.75 16 25 C -0.09 -1.77 5.22 32.00 0.17 -1.60 16 26 C -0.13 -2.19 6.54 31.79 0.21 -1.99 16 27 C -0.12 -1.34 6.80 31.32 0.21 -1.12 16 28 C -0.12 -1.15 4.59 31.32 0.14 -1.00 16 29 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 0.84 4.56 -2.39 -0.01 0.83 16 33 H 0.09 0.71 8.06 -2.39 -0.02 0.69 16 34 H 0.09 0.93 8.12 -2.38 -0.02 0.91 16 35 H 0.12 0.99 3.17 -2.39 -0.01 0.98 16 36 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.95 7.59 -2.38 -0.02 0.93 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.52 6.51 -2.39 -0.02 1.50 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 42 H 0.03 1.26 6.54 -2.39 -0.02 1.24 16 43 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 44 H 0.37 21.21 7.67 -92.71 -0.71 20.50 16 45 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 46 H 0.06 2.00 7.04 -2.39 -0.02 1.99 16 47 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.05 1.24 7.36 -2.39 -0.02 1.22 16 49 H 0.09 1.32 8.06 -2.38 -0.02 1.30 16 50 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.04 0.91 7.80 -2.39 -0.02 0.89 16 52 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 53 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 54 H 0.11 0.38 7.78 -2.39 -0.02 0.36 16 55 H 0.08 0.78 5.64 -2.39 -0.01 0.77 16 Total: -1.00 -78.82 409.14 2.47 -76.34 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.15 Total: 30.36 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 5.92 Total: -5.11 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -4.07 Total: -119.11 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -1.55 Total: -31.56 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -78.82 2.47 -76.34 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753547411.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.579 kcal (2) G-P(sol) polarization free energy of solvation -78.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds