Wall clock time and date at job start Tue Mar 31 2020 23:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99940 * 2 1 4 4 H 1.08992 * 109.47170 * 30.00473 * 3 2 1 5 5 C 1.50701 * 109.47252 * 269.99953 * 3 2 1 6 6 O 1.21281 * 119.99909 * 355.00523 * 5 3 2 7 7 N 1.34779 * 120.00198 * 174.99891 * 5 3 2 8 8 C 1.46493 * 119.99990 * 180.02562 * 7 5 3 9 9 C 1.52999 * 109.47133 * 175.53926 * 8 7 5 10 10 N 1.46505 * 110.01901 * 55.25774 * 9 8 7 11 11 C 1.36935 * 119.99743 * 61.55053 * 10 9 8 12 12 H 1.08000 * 120.00235 * 354.37921 * 11 10 9 13 13 C 1.38815 * 119.99914 * 174.37699 * 11 10 9 14 14 N 1.31614 * 120.00013 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99852 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47075 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47066 * 120.00267 * 15 13 11 18 18 H 1.48505 * 109.46537 * 239.99887 * 15 13 11 19 19 C 1.54270 * 110.03210 * 293.81605 * 9 8 7 20 20 C 1.54885 * 104.19746 * 217.10180 * 19 9 8 21 21 C 1.54897 * 102.74890 * 37.94406 * 20 19 9 22 22 C 1.53880 * 110.03758 * 176.65047 * 9 8 7 23 23 C 1.52999 * 109.47041 * 150.00304 * 3 2 1 24 24 C 1.53008 * 109.47234 * 60.00048 * 23 3 2 25 25 C 1.52999 * 109.47234 * 180.02562 * 24 23 3 26 26 C 1.53009 * 109.46986 * 59.99761 * 25 24 23 27 27 C 1.52998 * 109.47361 * 300.00230 * 26 25 24 28 28 C 1.52997 * 109.47013 * 300.00111 * 23 3 2 29 29 H 1.08995 * 109.47132 * 59.99970 * 1 2 3 30 30 H 1.08994 * 109.46680 * 299.99902 * 1 2 3 31 31 H 1.09003 * 109.47140 * 179.97438 * 1 2 3 32 32 H 0.97004 * 119.99497 * 0.02562 * 7 5 3 33 33 H 1.09005 * 109.47169 * 295.53401 * 8 7 5 34 34 H 1.09004 * 109.47547 * 55.54141 * 8 7 5 35 35 H 0.96996 * 120.00070 * 241.55365 * 10 9 8 36 36 H 0.97003 * 119.99938 * 179.97438 * 14 13 11 37 37 H 1.08994 * 110.48346 * 335.78556 * 19 9 8 38 38 H 1.08998 * 110.48230 * 98.42737 * 19 9 8 39 39 H 1.09005 * 110.76007 * 279.62929 * 20 19 9 40 40 H 1.08996 * 110.75924 * 156.25298 * 20 19 9 41 41 H 1.08997 * 110.48591 * 203.37744 * 21 20 19 42 42 H 1.08999 * 110.48449 * 80.72916 * 21 20 19 43 43 H 1.09001 * 110.03189 * 238.57514 * 22 9 8 44 44 H 1.09004 * 110.02631 * 359.97438 * 22 9 8 45 45 H 1.08998 * 109.47296 * 179.97438 * 23 3 2 46 46 H 1.08998 * 109.46908 * 300.00150 * 24 23 3 47 47 H 1.08994 * 109.47084 * 59.99630 * 24 23 3 48 48 H 1.09003 * 109.47057 * 300.00334 * 25 24 23 49 49 H 1.09001 * 109.47313 * 179.97438 * 25 24 23 50 50 H 1.08996 * 109.46860 * 179.97438 * 26 25 24 51 51 H 1.09003 * 109.46755 * 60.00387 * 26 25 24 52 52 H 1.09001 * 109.46764 * 300.00333 * 27 26 25 53 53 H 1.08997 * 109.47152 * 179.97438 * 27 26 25 54 54 H 1.09002 * 109.47153 * 299.99763 * 28 23 3 55 55 H 1.08998 * 109.47212 * 59.99798 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2146 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3413 7 7 2.6588 3.0125 -1.6686 8 6 2.8569 3.4587 -3.0498 9 6 3.2552 4.9360 -3.0563 10 7 4.4360 5.1408 -2.2136 11 6 5.6142 4.5148 -2.5221 12 1 5.6504 3.8004 -3.3313 13 6 6.7620 4.7984 -1.7948 14 7 6.7180 5.6693 -0.8090 15 14 8.3694 3.9449 -2.2161 16 1 8.1539 3.0187 -3.3567 17 1 9.3866 4.9607 -2.5880 18 1 8.8452 3.1762 -1.0379 19 6 2.0842 5.8012 -2.5462 20 6 2.1491 7.0800 -3.4177 21 6 2.5448 6.5258 -4.8090 22 6 3.5480 5.3967 -4.4950 23 6 3.3589 1.2632 0.7212 24 6 4.2928 0.2892 -0.0002 25 6 5.6412 0.2465 0.7214 26 6 5.4333 -0.2198 2.1638 27 6 4.4995 0.7542 2.8851 28 6 3.1515 0.7972 2.1636 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.8474 3.6152 -0.9323 33 1 3.6469 2.8675 -3.5129 34 1 1.9307 3.3297 -3.6097 35 1 4.3832 5.7198 -1.4372 36 1 7.5200 5.8672 -0.3005 37 1 1.1357 5.2855 -2.6954 38 1 2.2234 6.0493 -1.4940 39 1 2.9106 7.7643 -3.0436 40 1 1.1758 7.5688 -3.4594 41 1 3.0200 7.3026 -5.4080 42 1 1.6706 6.1270 -5.3235 43 1 4.5684 5.7734 -4.5660 44 1 3.4068 4.5677 -5.1885 45 1 3.8025 2.2589 0.7208 46 1 3.8494 -0.7066 -0.0002 47 1 4.4404 0.6211 -1.0278 48 1 6.0848 1.2422 0.7219 49 1 6.3064 -0.4478 0.2078 50 1 6.3940 -0.2507 2.6777 51 1 4.9898 -1.2155 2.1633 52 1 4.9431 1.7498 2.8854 53 1 4.3511 0.4217 3.9125 54 1 2.4863 1.4912 2.6775 55 1 2.7082 -0.1985 2.1636 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753671902.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:14 Heat of formation + Delta-G solvation = -121.963396 kcal Electronic energy + Delta-G solvation = -32469.041704 eV Core-core repulsion = 28503.935288 eV Total energy + Delta-G solvation = -3965.106415 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.43884 -40.02473 -38.99712 -37.91994 -35.56162 -35.10423 -33.12584 -32.27285 -31.64710 -29.68410 -29.57268 -28.15617 -27.03034 -25.76243 -24.68283 -23.59302 -22.82300 -21.68962 -21.03948 -20.55867 -20.09866 -19.03170 -18.27146 -17.79233 -17.13159 -17.06752 -16.41847 -16.02568 -15.91483 -15.71299 -15.53217 -15.39389 -15.06465 -14.94987 -14.91579 -14.51805 -14.33371 -14.15172 -13.95411 -13.45675 -13.26423 -13.16934 -13.03447 -12.90990 -12.77002 -12.64309 -12.30311 -12.26840 -12.07461 -12.00295 -11.96573 -11.84599 -11.80042 -11.55166 -11.54252 -11.41502 -11.35150 -11.31385 -11.11673 -10.92723 -10.91398 -10.18717 -9.92086 -8.94469 -7.90737 -5.15394 1.40602 1.45129 1.50459 1.63006 2.23981 2.55748 2.85435 3.40422 3.62955 3.63494 3.74965 3.81028 3.85527 3.89871 3.99073 4.08345 4.15466 4.28930 4.38492 4.41258 4.43962 4.52921 4.56523 4.57842 4.60322 4.64674 4.65855 4.68489 4.75539 4.76113 4.85050 4.85944 4.96313 4.98044 5.01836 5.14359 5.14565 5.19643 5.25233 5.27400 5.28196 5.30545 5.36980 5.40327 5.41233 5.44994 5.56595 5.61399 5.64960 5.69897 6.06877 6.33440 6.68046 7.31268 7.41496 8.13772 8.39932 9.31554 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008633 B = 0.005166 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3242.432553 B = 5418.389249 C = 7662.070200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.371 6.371 3 C 0.087 3.913 4 H 0.112 0.888 5 C 0.485 3.515 6 O -0.583 6.583 7 N -0.695 5.695 8 C 0.128 3.872 9 C 0.185 3.815 10 N -0.711 5.711 11 C -0.210 4.210 12 H 0.057 0.943 13 C -0.055 4.055 14 N -0.955 5.955 15 Si 0.939 3.061 16 H -0.281 1.281 17 H -0.296 1.296 18 H -0.296 1.296 19 C -0.114 4.114 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.131 4.131 23 C -0.074 4.074 24 C -0.100 4.100 25 C -0.121 4.121 26 C -0.113 4.113 27 C -0.118 4.118 28 C -0.100 4.100 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.406 0.594 33 H 0.024 0.976 34 H 0.064 0.936 35 H 0.377 0.623 36 H 0.248 0.752 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.023 0.977 48 H 0.042 0.958 49 H 0.055 0.945 50 H 0.065 0.935 51 H 0.070 0.930 52 H 0.053 0.947 53 H 0.083 0.917 54 H 0.080 0.920 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.793 -5.067 5.943 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.288 6.288 3 C 0.026 3.974 4 H 0.130 0.870 5 C 0.271 3.729 6 O -0.464 6.464 7 N -0.346 5.346 8 C 0.001 3.999 9 C 0.094 3.906 10 N -0.352 5.352 11 C -0.342 4.342 12 H 0.075 0.925 13 C -0.248 4.248 14 N -0.606 5.606 15 Si 0.771 3.229 16 H -0.207 1.207 17 H -0.223 1.223 18 H -0.223 1.223 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.151 4.151 22 C -0.171 4.171 23 C -0.092 4.092 24 C -0.138 4.138 25 C -0.159 4.159 26 C -0.150 4.150 27 C -0.156 4.156 28 C -0.137 4.137 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.242 0.758 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.211 0.789 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.042 0.958 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.084 0.916 51 H 0.088 0.912 52 H 0.071 0.929 53 H 0.102 0.898 54 H 0.099 0.901 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.720 -5.872 5.193 15.801 hybrid contribution 1.656 0.224 -0.264 1.692 sum -12.064 -5.648 4.929 14.203 Atomic orbital electron populations 1.23017 0.79640 1.04092 1.00437 1.87954 1.21277 1.25272 1.94300 1.22118 0.97629 0.87054 0.90613 0.87041 1.21865 0.76549 0.81489 0.92977 1.90630 1.53387 1.54686 1.47673 1.45804 1.65281 1.14005 1.09488 1.21750 0.98607 0.96821 0.82674 1.20683 0.87642 0.90858 0.91369 1.42558 1.06240 1.55811 1.30580 1.19160 0.87590 1.15611 1.11830 0.92504 1.25088 0.99510 1.00678 0.99567 1.69738 1.28084 1.38572 1.24224 0.85576 0.82406 0.77809 0.77063 1.20655 1.22331 1.22340 1.22529 0.96898 0.96019 0.99769 1.22398 1.01414 0.96584 0.94793 1.22290 0.98431 0.97024 0.97356 1.22606 0.99705 0.98382 0.96431 1.21246 0.91512 1.00107 0.96383 1.21342 0.95588 0.99784 0.97067 1.21529 0.96508 1.00602 0.97254 1.21502 0.99998 0.99540 0.93970 1.21528 0.95153 0.99339 0.99533 1.21459 0.97715 1.02508 0.92037 0.95232 0.91399 0.88120 0.75754 0.95706 0.91779 0.78938 0.94295 0.89906 0.91473 0.92964 0.89566 0.91838 0.90350 0.93236 0.92872 0.90376 0.91514 0.95806 0.93888 0.92578 0.91604 0.91167 0.92867 0.89828 0.90142 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.81 113.37 1.23 1.72 16 2 O -0.37 -10.28 8.54 -129.99 -1.11 -11.39 16 3 C 0.09 2.38 2.26 29.85 0.07 2.45 16 4 H 0.11 2.32 7.79 -2.39 -0.02 2.30 16 5 C 0.48 16.95 5.87 87.66 0.51 17.47 16 6 O -0.58 -24.94 16.51 15.96 0.26 -24.68 16 7 N -0.69 -23.71 5.19 -463.06 -2.40 -26.11 16 8 C 0.13 4.69 4.04 86.38 0.35 5.04 16 9 C 0.19 6.51 0.68 4.33 0.00 6.52 16 10 N -0.71 -31.32 4.53 -300.05 -1.36 -32.67 16 11 C -0.21 -10.82 8.52 84.03 0.72 -10.10 16 12 H 0.06 3.05 7.27 -2.91 -0.02 3.03 16 13 C -0.06 -3.02 5.50 84.86 0.47 -2.55 16 14 N -0.96 -54.44 13.07 21.65 0.28 -54.16 16 15 Si 0.94 46.04 29.55 68.60 2.03 48.06 16 16 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 17 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 18 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 19 C -0.11 -3.17 5.72 31.67 0.18 -2.99 16 20 C -0.11 -2.93 6.91 31.89 0.22 -2.71 16 21 C -0.11 -3.00 6.83 31.67 0.22 -2.79 16 22 C -0.13 -4.51 5.93 31.32 0.19 -4.32 16 23 C -0.07 -2.04 2.04 -10.79 -0.02 -2.06 16 24 C -0.10 -3.27 4.81 30.60 0.15 -3.12 16 25 C -0.12 -3.71 5.92 30.60 0.18 -3.53 16 26 C -0.11 -2.66 5.92 30.60 0.18 -2.48 16 27 C -0.12 -2.52 5.92 30.58 0.18 -2.34 16 28 C -0.10 -2.12 5.05 30.58 0.15 -1.97 16 29 H 0.03 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.41 13.23 7.78 -92.71 -0.72 12.51 16 33 H 0.02 1.08 7.46 -2.38 -0.02 1.06 16 34 H 0.06 2.21 8.04 -2.38 -0.02 2.19 16 35 H 0.38 17.70 7.45 -92.71 -0.69 17.01 16 36 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 37 H 0.08 2.01 7.79 -2.39 -0.02 1.99 16 38 H 0.07 1.88 7.72 -2.39 -0.02 1.86 16 39 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.05 2.02 7.36 -2.39 -0.02 2.00 16 44 H 0.05 1.77 7.67 -2.39 -0.02 1.75 16 45 H 0.08 2.40 7.92 -2.39 -0.02 2.38 16 46 H 0.07 2.16 7.68 -2.39 -0.02 2.14 16 47 H 0.02 0.94 7.22 -2.39 -0.02 0.92 16 48 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 53 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 54 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 55 H 0.07 1.56 7.68 -2.39 -0.02 1.54 16 Total: -1.00 -65.59 420.51 2.12 -63.47 By element: Atomic # 1 Polarization: 45.80 SS G_CDS: -0.56 Total: 45.24 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 4.97 Total: -7.77 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -3.48 Total: -112.94 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.85 Total: -36.07 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -65.59 2.12 -63.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753671902.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.491 kcal (2) G-P(sol) polarization free energy of solvation -65.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds