Wall clock time and date at job start Tue Mar 31 2020 23:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00344 * 2 1 4 4 H 1.09000 * 109.46766 * 13.11718 * 3 2 1 5 5 C 1.50698 * 109.47227 * 133.12264 * 3 2 1 6 6 O 1.21277 * 120.00021 * 5.33129 * 5 3 2 7 7 N 1.34773 * 119.99859 * 185.33377 * 5 3 2 8 8 C 1.46494 * 120.00066 * 185.08990 * 7 5 3 9 9 C 1.52999 * 109.47443 * 272.35538 * 8 7 5 10 10 N 1.46503 * 110.53903 * 303.42692 * 9 8 7 11 11 C 1.36947 * 119.99429 * 62.91164 * 10 9 8 12 12 H 1.07997 * 120.00136 * 7.98747 * 11 10 9 13 13 C 1.38809 * 119.99667 * 187.98242 * 11 10 9 14 14 N 1.31626 * 120.00229 * 354.91521 * 13 11 10 15 15 Si 1.86799 * 120.00066 * 174.90838 * 13 11 10 16 16 H 1.48512 * 109.46734 * 5.02126 * 15 13 11 17 17 H 1.48498 * 109.47369 * 125.01619 * 15 13 11 18 18 H 1.48495 * 109.47463 * 245.02450 * 15 13 11 19 19 C 1.54889 * 110.48941 * 66.04249 * 9 8 7 20 20 C 1.54883 * 102.74929 * 156.61870 * 19 9 8 21 21 C 1.54265 * 104.19872 * 322.06094 * 20 19 9 22 22 C 1.53871 * 106.59804 * 23.60815 * 21 20 19 23 23 C 1.53000 * 109.47070 * 253.12300 * 3 2 1 24 24 C 1.53003 * 109.47275 * 65.13614 * 23 3 2 25 25 C 1.53000 * 109.47275 * 179.97438 * 24 23 3 26 26 C 1.53005 * 109.47105 * 60.00180 * 25 24 23 27 27 C 1.53003 * 109.46907 * 300.00045 * 26 25 24 28 28 C 1.53000 * 109.47275 * 60.00059 * 27 26 25 29 29 H 1.08998 * 109.47067 * 184.70112 * 1 2 3 30 30 H 1.08992 * 109.46965 * 304.70057 * 1 2 3 31 31 H 1.08997 * 109.46947 * 64.70559 * 1 2 3 32 32 H 0.97003 * 120.00331 * 5.09546 * 7 5 3 33 33 H 1.09005 * 109.47338 * 152.35315 * 8 7 5 34 34 H 1.09003 * 109.47159 * 32.35497 * 8 7 5 35 35 H 0.96998 * 120.00497 * 242.91794 * 10 9 8 36 36 H 0.96995 * 119.99883 * 179.97438 * 14 13 11 37 37 H 1.08996 * 110.75251 * 274.93812 * 19 9 8 38 38 H 1.09006 * 110.75179 * 38.30508 * 19 9 8 39 39 H 1.08999 * 110.48582 * 203.37527 * 20 19 9 40 40 H 1.09009 * 110.48349 * 80.73616 * 20 19 9 41 41 H 1.09002 * 110.03222 * 264.32097 * 21 20 19 42 42 H 1.09005 * 110.03144 * 142.89618 * 21 20 19 43 43 H 1.08999 * 110.03183 * 240.71689 * 22 21 20 44 44 H 1.09004 * 110.03123 * 119.28804 * 22 21 20 45 45 H 1.08994 * 109.47090 * 185.13584 * 23 3 2 46 46 H 1.09002 * 109.47295 * 300.00212 * 24 23 3 47 47 H 1.08998 * 109.47201 * 60.00099 * 24 23 3 48 48 H 1.09002 * 109.47132 * 300.00312 * 25 24 23 49 49 H 1.08996 * 109.47184 * 179.97438 * 25 24 23 50 50 H 1.08996 * 109.47413 * 180.02562 * 26 25 24 51 51 H 1.08994 * 109.47318 * 59.99929 * 26 25 24 52 52 H 1.09002 * 109.47295 * 299.99847 * 27 26 25 53 53 H 1.08998 * 109.47201 * 179.97438 * 27 26 25 54 54 H 1.08996 * 109.47184 * 180.02562 * 28 27 26 55 55 H 1.09002 * 109.47132 * 59.99688 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2438 2.0444 0.2332 5 6 3.1019 1.3693 1.0370 6 8 3.4228 0.3684 1.6420 7 7 3.7214 2.5387 1.2921 8 6 4.8562 2.5797 2.2176 9 6 4.3430 2.7749 3.6457 10 7 3.5260 3.9875 3.7370 11 6 2.3626 4.0848 3.0211 12 1 1.9805 3.2243 2.4922 13 6 1.6746 5.2895 2.9753 14 7 2.0845 6.3095 3.6993 15 14 0.1670 5.4633 1.8862 16 1 -0.1553 4.1493 1.2737 17 1 -0.9839 5.9239 2.7037 18 1 0.4416 6.4546 0.8151 19 6 3.5306 1.5382 4.1036 20 6 3.6276 1.6180 5.6473 21 6 5.0668 2.1065 5.9113 22 6 5.5217 2.8421 4.6386 23 6 2.6003 1.6010 -1.3804 24 6 1.4739 1.6627 -2.4140 25 6 2.0639 1.9588 -3.7942 26 6 3.0471 0.8508 -4.1771 27 6 4.1735 0.7891 -3.1435 28 6 3.5836 0.4929 -1.7632 29 1 -0.3633 -1.0242 0.0842 30 1 -0.3633 0.5850 0.8448 31 1 -0.3633 0.4391 -0.9291 32 1 3.4159 3.3532 0.8630 33 1 5.5127 3.4081 1.9511 34 1 5.4099 1.6429 2.1554 35 1 3.8091 4.7215 4.3045 36 1 1.6039 7.1514 3.6670 37 1 2.4935 1.6149 3.7771 38 1 3.9858 0.6189 3.7349 39 1 3.4710 0.6346 6.0907 40 1 2.9041 2.3334 6.0385 41 1 5.7203 1.2558 6.1046 42 1 5.0796 2.7884 6.7616 43 1 6.3959 2.3483 4.2143 44 1 5.7553 3.8810 4.8712 45 1 3.1229 2.5571 -1.3550 46 1 0.9512 0.7065 -2.4394 47 1 0.7737 2.4523 -2.1415 48 1 2.5862 2.9152 -3.7685 49 1 1.2614 2.0024 -4.5306 50 1 3.4677 1.0620 -5.1602 51 1 2.5248 -0.1055 -4.2028 52 1 4.6959 1.7454 -3.1177 53 1 4.8737 -0.0006 -3.4159 54 1 4.3860 0.4494 -1.0268 55 1 3.0612 -0.4634 -1.7889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753671903.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:18 Heat of formation + Delta-G solvation = -112.105056 kcal Electronic energy + Delta-G solvation = -32936.537463 eV Core-core repulsion = 28971.858538 eV Total energy + Delta-G solvation = -3964.678926 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.46598 -40.03709 -38.76675 -37.86321 -35.63206 -34.81112 -33.02079 -32.11117 -31.65536 -29.97472 -29.37345 -28.39919 -26.87603 -25.55013 -24.94185 -23.51452 -22.74894 -21.35080 -21.08897 -20.62886 -20.09122 -18.97118 -18.26450 -17.75293 -17.19973 -16.92417 -16.39350 -16.02974 -15.93913 -15.80861 -15.44540 -15.24414 -15.03659 -14.97113 -14.85576 -14.45225 -14.30141 -13.93255 -13.88736 -13.29646 -13.20085 -13.12161 -13.04626 -12.85764 -12.76119 -12.47365 -12.34615 -12.21293 -12.16637 -12.02784 -11.90662 -11.89715 -11.69904 -11.62739 -11.55514 -11.44423 -11.22515 -11.21276 -11.07585 -10.80001 -10.78000 -10.13099 -9.68187 -8.84321 -7.85644 -5.09363 1.42943 1.46074 1.53385 1.78666 2.16108 2.58601 3.05777 3.46140 3.62365 3.66182 3.81217 3.86503 3.90162 3.97693 4.05110 4.07259 4.23122 4.31977 4.37864 4.38476 4.48062 4.51106 4.51791 4.59186 4.65701 4.67334 4.67433 4.72265 4.74899 4.77985 4.81369 4.91225 4.94226 5.01874 5.06147 5.15654 5.17065 5.19896 5.24072 5.30102 5.31361 5.31497 5.38250 5.43125 5.47331 5.52740 5.60409 5.62926 5.69430 5.79051 6.06695 6.38892 6.79063 7.43449 7.46364 8.21509 8.48122 9.38472 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010443 B = 0.004731 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.560631 B = 5917.571001 C = 7138.448013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.372 6.372 3 C 0.075 3.925 4 H 0.079 0.921 5 C 0.506 3.494 6 O -0.563 6.563 7 N -0.695 5.695 8 C 0.120 3.880 9 C 0.175 3.825 10 N -0.716 5.716 11 C -0.200 4.200 12 H 0.074 0.926 13 C -0.073 4.073 14 N -0.967 5.967 15 Si 0.941 3.059 16 H -0.263 1.263 17 H -0.309 1.309 18 H -0.289 1.289 19 C -0.109 4.109 20 C -0.118 4.118 21 C -0.110 4.110 22 C -0.117 4.117 23 C -0.089 4.089 24 C -0.114 4.114 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.115 4.115 28 C -0.100 4.100 29 H 0.103 0.897 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.406 0.594 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.371 0.629 36 H 0.245 0.755 37 H 0.022 0.978 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.073 0.927 51 H 0.060 0.940 52 H 0.062 0.938 53 H 0.066 0.934 54 H 0.039 0.961 55 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 -10.070 -12.791 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.289 6.289 3 C 0.014 3.986 4 H 0.097 0.903 5 C 0.292 3.708 6 O -0.442 6.442 7 N -0.345 5.345 8 C -0.007 4.007 9 C 0.084 3.916 10 N -0.355 5.355 11 C -0.332 4.332 12 H 0.092 0.908 13 C -0.265 4.265 14 N -0.619 5.619 15 Si 0.773 3.227 16 H -0.187 1.187 17 H -0.238 1.238 18 H -0.216 1.216 19 C -0.148 4.148 20 C -0.156 4.156 21 C -0.148 4.148 22 C -0.156 4.156 23 C -0.108 4.108 24 C -0.152 4.152 25 C -0.153 4.153 26 C -0.153 4.153 27 C -0.153 4.153 28 C -0.137 4.137 29 H 0.122 0.878 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.241 0.759 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.204 0.796 36 H 0.054 0.946 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.093 0.907 50 H 0.092 0.908 51 H 0.079 0.921 52 H 0.081 0.919 53 H 0.085 0.915 54 H 0.058 0.942 55 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.592 -11.009 -12.508 17.046 hybrid contribution -1.561 1.421 0.153 2.116 sum 2.031 -9.588 -12.355 15.770 Atomic orbital electron populations 1.23127 0.79871 1.03948 1.00643 1.87943 1.20726 1.25462 1.94792 1.22117 0.94773 0.86736 0.94990 0.90292 1.20743 0.83333 0.83423 0.83286 1.90602 1.65691 1.36301 1.51610 1.45763 1.33608 1.09454 1.45641 1.21924 0.87620 1.01355 0.89772 1.21076 0.90746 0.86700 0.93121 1.42559 1.23609 1.15596 1.53760 1.19470 0.98787 0.94126 1.20834 0.90795 1.25334 1.02020 0.96551 1.02620 1.69814 1.43489 1.03186 1.45394 0.85534 0.80225 0.77961 0.79023 1.18741 1.23765 1.21591 1.22757 0.98772 0.98336 0.94942 1.22240 0.97356 0.99586 0.96396 1.22013 0.95577 0.99841 0.97369 1.22292 0.97349 1.00726 0.95191 1.21524 0.97620 0.99973 0.91654 1.21631 0.96673 1.02101 0.94789 1.21513 0.99094 0.98981 0.95673 1.21521 0.96284 0.98972 0.98516 1.21526 0.97998 1.01843 0.93907 1.21341 0.97224 0.98146 0.97005 0.87848 0.94995 0.91923 0.75866 0.89996 0.90973 0.79627 0.94592 0.95897 0.91642 0.91969 0.94407 0.90341 0.92181 0.89505 0.91950 0.89687 0.91295 0.91917 0.91774 0.90705 0.90804 0.92088 0.91880 0.91541 0.94229 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.44 113.37 1.18 1.68 16 2 O -0.37 -11.75 8.65 -130.00 -1.13 -12.88 16 3 C 0.08 2.34 2.34 29.85 0.07 2.41 16 4 H 0.08 2.53 7.59 -2.39 -0.02 2.51 16 5 C 0.51 18.42 4.92 87.66 0.43 18.85 16 6 O -0.56 -23.83 13.40 15.96 0.21 -23.61 16 7 N -0.69 -24.21 3.07 -463.08 -1.42 -25.63 16 8 C 0.12 4.09 5.24 86.38 0.45 4.54 16 9 C 0.17 6.60 0.81 4.68 0.00 6.60 16 10 N -0.72 -32.98 5.14 -298.49 -1.53 -34.52 16 11 C -0.20 -9.96 7.36 84.03 0.62 -9.34 16 12 H 0.07 3.65 5.29 -2.91 -0.02 3.64 16 13 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 14 N -0.97 -56.21 13.07 21.65 0.28 -55.93 16 15 Si 0.94 43.02 29.56 68.60 2.03 45.05 16 16 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.31 -14.92 7.11 99.48 0.71 -14.22 16 18 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 19 C -0.11 -4.36 4.16 31.88 0.13 -4.23 16 20 C -0.12 -4.26 6.79 31.67 0.22 -4.05 16 21 C -0.11 -3.34 6.80 31.32 0.21 -3.12 16 22 C -0.12 -3.68 6.05 31.32 0.19 -3.49 16 23 C -0.09 -2.20 2.00 -10.79 -0.02 -2.22 16 24 C -0.11 -2.34 4.55 30.60 0.14 -2.20 16 25 C -0.12 -1.92 5.92 30.60 0.18 -1.74 16 26 C -0.12 -1.87 5.92 30.60 0.18 -1.69 16 27 C -0.12 -2.19 5.92 30.60 0.18 -2.01 16 28 C -0.10 -2.46 4.82 30.60 0.15 -2.32 16 29 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.03 0.85 8.05 -2.39 -0.02 0.83 16 31 H 0.06 1.26 6.55 -2.39 -0.02 1.25 16 32 H 0.41 14.02 7.85 -92.71 -0.73 13.29 16 33 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 34 H 0.07 2.40 7.53 -2.39 -0.02 2.38 16 35 H 0.37 18.80 7.48 -92.71 -0.69 18.11 16 36 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 37 H 0.02 1.06 6.69 -2.39 -0.02 1.05 16 38 H 0.07 2.68 6.47 -2.38 -0.02 2.66 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.09 2.28 7.84 -2.39 -0.02 2.26 16 44 H 0.06 2.01 7.73 -2.39 -0.02 2.00 16 45 H 0.08 2.06 7.96 -2.39 -0.02 2.04 16 46 H 0.07 1.40 6.57 -2.39 -0.02 1.39 16 47 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 54 H 0.04 1.14 7.38 -2.39 -0.02 1.12 16 55 H 0.06 1.62 7.56 -2.39 -0.02 1.61 16 Total: -1.00 -63.80 406.47 2.68 -61.12 By element: Atomic # 1 Polarization: 52.72 SS G_CDS: -0.55 Total: 52.17 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 4.79 Total: -5.77 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -2.67 Total: -116.07 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.91 Total: -36.49 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -63.80 2.68 -61.12 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753671903.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.988 kcal (2) G-P(sol) polarization free energy of solvation -63.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds