Wall clock time and date at job start Tue Mar 31 2020 22:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00153 * 2 1 4 4 H 1.09000 * 109.46688 * 29.97789 * 3 2 1 5 5 C 1.50697 * 109.47041 * 149.98119 * 3 2 1 6 6 O 1.21279 * 120.00321 * 37.61050 * 5 3 2 7 7 N 1.34775 * 119.99755 * 217.60952 * 5 3 2 8 8 C 1.46932 * 120.63190 * 6.41391 * 7 5 3 9 9 C 1.53188 * 108.77628 * 233.58245 * 8 7 5 10 10 C 1.53034 * 109.31472 * 305.36742 * 9 8 7 11 11 C 1.53041 * 109.54220 * 61.36619 * 10 9 8 12 12 C 1.46926 * 120.63093 * 186.38821 * 7 5 3 13 13 H 1.08994 * 109.70918 * 246.27061 * 12 7 5 14 14 C 1.52999 * 109.58720 * 6.62843 * 12 7 5 15 15 C 1.52997 * 109.47141 * 177.16828 * 14 12 7 16 16 N 1.46505 * 109.47055 * 177.09818 * 15 14 12 17 17 C 1.36932 * 120.00185 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99771 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00577 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99267 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00446 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47163 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47093 * 299.99884 * 21 19 17 24 24 H 1.48503 * 109.47011 * 59.99895 * 21 19 17 25 25 C 1.53001 * 109.47234 * 269.97859 * 3 2 1 26 26 C 1.54261 * 110.03345 * 302.42884 * 25 3 2 27 27 C 1.54964 * 104.16355 * 217.13279 * 26 25 3 28 28 C 1.54896 * 102.77194 * 37.88688 * 27 26 25 29 29 C 1.53872 * 110.03427 * 185.20775 * 25 3 2 30 30 H 1.08998 * 109.47125 * 304.75638 * 1 2 3 31 31 H 1.08996 * 109.46889 * 64.75783 * 1 2 3 32 32 H 1.09002 * 109.46873 * 184.75909 * 1 2 3 33 33 H 1.09003 * 109.58184 * 113.79992 * 8 7 5 34 34 H 1.08998 * 109.69917 * 353.44633 * 8 7 5 35 35 H 1.09000 * 109.49919 * 185.40869 * 9 8 7 36 36 H 1.09006 * 109.49353 * 65.31633 * 9 8 7 37 37 H 1.08998 * 109.46218 * 301.34138 * 10 9 8 38 38 H 1.09009 * 109.44679 * 181.37561 * 10 9 8 39 39 H 1.08996 * 109.50300 * 178.68460 * 11 10 9 40 40 H 1.08996 * 109.52741 * 58.59620 * 11 10 9 41 41 H 1.09001 * 109.46811 * 57.17735 * 14 12 7 42 42 H 1.08998 * 109.47291 * 297.17654 * 14 12 7 43 43 H 1.08997 * 109.46919 * 57.10563 * 15 14 12 44 44 H 1.08993 * 109.48007 * 297.09751 * 15 14 12 45 45 H 0.96996 * 119.99716 * 0.02562 * 16 15 14 46 46 H 0.96997 * 120.00603 * 0.02562 * 20 19 17 47 47 H 1.09002 * 110.01680 * 63.81976 * 25 3 2 48 48 H 1.09004 * 110.48821 * 335.78470 * 26 25 3 49 49 H 1.09005 * 110.48712 * 98.42361 * 26 25 3 50 50 H 1.09000 * 110.72094 * 279.58171 * 27 26 25 51 51 H 1.09001 * 110.76677 * 156.22147 * 27 26 25 52 52 H 1.08994 * 110.48648 * 203.40509 * 28 27 26 53 53 H 1.09003 * 110.48163 * 80.76377 * 28 27 26 54 54 H 1.08990 * 110.03368 * 238.57404 * 29 25 3 55 55 H 1.08999 * 110.02951 * 359.95908 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3448 1.9994 0.5135 5 6 3.3384 1.2639 0.7108 6 8 4.0661 0.3025 0.5806 7 7 3.7176 2.2952 1.4912 8 6 2.7922 3.4015 1.7717 9 6 3.4775 4.7221 1.4069 10 6 4.8148 4.8190 2.1445 11 6 5.7238 3.6671 1.7099 12 6 5.0639 2.3344 2.0782 13 1 4.9948 2.2483 3.1625 14 6 5.8988 1.1782 1.5241 15 6 7.3208 1.2626 2.0825 16 7 8.1008 0.1172 1.6071 17 6 9.4110 -0.0212 1.9805 18 1 9.8694 0.7142 2.6250 19 6 10.1503 -1.1062 1.5297 20 7 9.5917 -2.0021 0.7438 21 14 11.9378 -1.2946 2.0384 22 1 12.4987 -2.5269 1.4286 23 1 12.7116 -0.1154 1.5739 24 1 12.0238 -1.3917 3.5178 25 6 2.2182 1.7711 -1.4425 26 6 3.1096 0.7650 -2.1993 27 6 3.9874 1.6522 -3.1178 28 6 4.2800 2.8843 -2.2257 29 6 2.9617 3.1182 -1.4595 30 1 -0.3633 0.5858 0.8443 31 1 -0.3633 0.4382 -0.9295 32 1 -0.3633 -1.0242 0.0853 33 1 2.5355 3.4035 2.8311 34 1 1.8867 3.2830 1.1766 35 1 2.8394 5.5561 1.6993 36 1 3.6518 4.7565 0.3314 37 1 4.6420 4.7597 3.2191 38 1 5.2931 5.7690 1.9055 39 1 6.6845 3.7500 2.2180 40 1 5.8775 3.7111 0.6317 41 1 5.9313 1.2422 0.4364 42 1 5.4482 0.2306 1.8190 43 1 7.2846 1.2505 3.1718 44 1 7.7897 2.1867 1.7447 45 1 7.6892 -0.5430 1.0280 46 1 8.6637 -1.9041 0.4793 47 1 1.2561 1.8694 -1.9452 48 1 3.7322 0.2061 -1.5007 49 1 2.4985 0.0862 -2.7943 50 1 3.4370 1.9448 -4.0120 51 1 4.9118 1.1387 -3.3825 52 1 4.5230 3.7511 -2.8402 53 1 5.0918 2.6682 -1.5312 54 1 2.3607 3.8699 -1.9712 55 1 3.1737 3.4406 -0.4401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753789110.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:01 Heat of formation + Delta-G solvation = -81.610631 kcal Electronic energy + Delta-G solvation = -32809.722541 eV Core-core repulsion = 28846.365953 eV Total energy + Delta-G solvation = -3963.356588 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.24234 -39.72373 -38.30915 -37.86702 -37.26411 -34.89237 -33.90040 -32.46542 -31.36539 -29.69320 -29.14398 -27.99303 -26.79210 -25.64051 -25.35429 -24.12886 -22.43187 -22.23183 -21.68127 -20.77315 -19.84388 -19.38779 -18.32368 -17.92358 -17.33764 -16.72756 -16.53642 -16.31324 -16.12686 -15.80726 -15.59961 -15.45448 -15.36430 -15.22493 -15.01977 -14.73921 -14.51704 -14.09664 -14.08698 -13.75389 -13.66426 -13.24040 -12.94837 -12.75605 -12.69214 -12.59403 -12.33932 -12.16948 -12.07408 -12.04793 -11.98583 -11.97787 -11.89561 -11.82190 -11.65622 -11.56690 -11.45867 -11.32593 -11.21411 -10.95323 -10.66285 -9.86448 -9.57330 -9.16410 -8.46030 -5.39147 1.53425 1.53910 1.66481 1.73841 1.82918 2.69096 2.87401 3.35339 3.35760 3.50862 3.58696 3.66540 3.73583 3.81026 3.85360 3.91529 4.05079 4.06737 4.17760 4.25329 4.32527 4.38817 4.43908 4.48014 4.50450 4.53637 4.58737 4.62578 4.64116 4.66367 4.70365 4.73990 4.77950 4.85041 4.85791 4.91463 4.96658 4.97806 5.07679 5.11452 5.16188 5.20443 5.26021 5.29996 5.33572 5.40507 5.47833 5.51719 5.53368 5.63278 6.06745 6.40452 6.43802 7.03599 7.22924 7.93462 8.09032 9.05369 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.003501 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.935999 B = 7995.073191 C = 8807.340789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.396 6.396 3 C 0.078 3.922 4 H 0.116 0.884 5 C 0.508 3.492 6 O -0.554 6.554 7 N -0.604 5.604 8 C 0.090 3.910 9 C -0.138 4.138 10 C -0.114 4.114 11 C -0.129 4.129 12 C 0.160 3.840 13 H 0.078 0.922 14 C -0.091 4.091 15 C 0.155 3.845 16 N -0.761 5.761 17 C -0.339 4.339 18 H 0.070 0.930 19 C -0.109 4.109 20 N -0.974 5.974 21 Si 1.135 2.865 22 H -0.291 1.291 23 H -0.273 1.273 24 H -0.274 1.274 25 C -0.098 4.098 26 C -0.128 4.128 27 C -0.125 4.125 28 C -0.123 4.123 29 C -0.137 4.137 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.040 0.960 42 H 0.057 0.943 43 H 0.016 0.984 44 H 0.024 0.976 45 H 0.355 0.645 46 H 0.238 0.762 47 H 0.110 0.890 48 H 0.048 0.952 49 H 0.063 0.937 50 H 0.087 0.913 51 H 0.040 0.960 52 H 0.080 0.920 53 H 0.029 0.971 54 H 0.099 0.901 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.676 20.480 -1.502 32.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.315 6.315 3 C 0.018 3.982 4 H 0.133 0.867 5 C 0.296 3.704 6 O -0.431 6.431 7 N -0.338 5.338 8 C -0.031 4.031 9 C -0.176 4.176 10 C -0.151 4.151 11 C -0.167 4.167 12 C 0.056 3.944 13 H 0.096 0.904 14 C -0.129 4.129 15 C 0.028 3.972 16 N -0.405 5.405 17 C -0.470 4.470 18 H 0.088 0.912 19 C -0.299 4.299 20 N -0.622 5.622 21 Si 0.958 3.042 22 H -0.217 1.217 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.117 4.117 26 C -0.166 4.166 27 C -0.162 4.162 28 C -0.160 4.160 29 C -0.174 4.174 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.042 0.958 45 H 0.186 0.814 46 H 0.049 0.951 47 H 0.128 0.872 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.106 0.894 51 H 0.059 0.941 52 H 0.099 0.901 53 H 0.048 0.952 54 H 0.118 0.882 55 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.772 19.055 -1.539 30.505 hybrid contribution -1.197 0.057 -0.196 1.214 sum -24.969 19.112 -1.735 31.491 Atomic orbital electron populations 1.23122 0.78622 1.04036 1.01746 1.88048 1.22005 1.26324 1.95096 1.22367 0.92390 0.86783 0.96688 0.86654 1.20936 0.88749 0.82078 0.78595 1.90801 1.54982 1.34803 1.62519 1.48260 1.14389 1.22286 1.48904 1.22289 0.92356 0.85256 1.03186 1.22137 0.96974 0.97108 1.01341 1.21513 0.95352 0.97313 1.00937 1.22003 0.99490 0.93939 1.01269 1.21079 0.81245 0.94945 0.97082 0.90439 1.21885 0.93112 0.98823 0.99102 1.20907 0.91311 0.89281 0.95713 1.42670 1.10371 1.27504 1.59908 1.20468 0.89364 1.09497 1.27695 0.91189 1.27502 1.10168 0.93493 0.98786 1.70977 1.13637 1.38133 1.39438 0.82582 0.69450 0.76144 0.76052 1.21679 1.19896 1.19989 1.22183 1.01015 0.95370 0.93092 1.22451 0.98057 0.97808 0.98284 1.22510 0.98906 0.96190 0.98600 1.22285 0.97505 0.98179 0.98059 1.22658 0.95663 0.96243 1.02826 0.91939 0.91986 0.89106 0.89247 0.87421 0.87140 0.90867 0.90692 0.90291 0.91196 0.92922 0.94146 0.92400 0.96647 0.95793 0.81381 0.95135 0.87198 0.93367 0.91774 0.89419 0.94114 0.90095 0.95240 0.88204 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.88 113.37 1.23 1.52 16 2 O -0.40 -10.08 9.73 -133.37 -1.30 -11.37 16 3 C 0.08 1.66 1.97 29.85 0.06 1.72 16 4 H 0.12 1.45 5.12 -2.39 -0.01 1.44 16 5 C 0.51 15.09 5.43 87.66 0.48 15.56 16 6 O -0.55 -23.28 10.45 12.59 0.13 -23.15 16 7 N -0.60 -14.25 2.49 -795.02 -1.98 -16.22 16 8 C 0.09 1.10 5.30 86.36 0.46 1.56 16 9 C -0.14 -1.36 5.77 30.67 0.18 -1.18 16 10 C -0.11 -1.61 5.88 30.62 0.18 -1.43 16 11 C -0.13 -3.06 4.78 30.68 0.15 -2.92 16 12 C 0.16 4.61 3.04 44.98 0.14 4.74 16 13 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 14 C -0.09 -3.77 3.30 30.59 0.10 -3.67 16 15 C 0.15 7.28 5.77 86.38 0.50 7.78 16 16 N -0.76 -45.13 5.60 -343.46 -1.92 -47.06 16 17 C -0.34 -21.24 9.99 84.03 0.84 -20.40 16 18 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.11 -6.93 5.50 84.86 0.47 -6.46 16 20 N -0.97 -67.09 13.70 21.65 0.30 -66.80 16 21 Si 1.13 55.47 29.92 68.60 2.05 57.52 16 22 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 C -0.10 -1.85 3.01 -10.07 -0.03 -1.88 16 26 C -0.13 -3.50 5.82 31.69 0.18 -3.32 16 27 C -0.12 -3.08 6.91 31.91 0.22 -2.86 16 28 C -0.12 -2.79 6.83 31.67 0.22 -2.57 16 29 C -0.14 -2.22 5.88 31.32 0.18 -2.04 16 30 H 0.06 0.61 7.98 -2.39 -0.02 0.59 16 31 H 0.06 0.63 8.10 -2.39 -0.02 0.61 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.11 0.80 4.93 -2.39 -0.01 0.79 16 35 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.07 0.83 5.93 -2.38 -0.01 0.81 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.07 1.82 6.80 -2.39 -0.02 1.80 16 40 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.04 1.86 7.20 -2.39 -0.02 1.84 16 42 H 0.06 2.79 6.29 -2.39 -0.02 2.77 16 43 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.02 1.10 6.69 -2.39 -0.02 1.08 16 45 H 0.36 22.58 6.50 -92.71 -0.60 21.98 16 46 H 0.24 16.85 6.77 -92.71 -0.63 16.22 16 47 H 0.11 1.45 8.10 -2.39 -0.02 1.43 16 48 H 0.05 1.81 5.53 -2.39 -0.01 1.79 16 49 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 50 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 53 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 54 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 55 H 0.09 1.38 1.64 -2.39 0.00 1.38 16 Total: -1.00 -87.95 398.64 3.25 -84.70 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: 0.42 Total: 38.22 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 5.55 Total: -15.84 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -3.60 Total: -130.08 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.17 Total: -34.53 kcal Atomic # 14 Polarization: 55.47 SS G_CDS: 2.05 Total: 57.52 kcal Total: -87.95 3.25 -84.70 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753789110.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.089 kcal (2) G-P(sol) polarization free energy of solvation -87.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds