Wall clock time and date at job start Tue Mar 31 2020 22:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99599 * 2 1 4 4 H 1.08997 * 109.47608 * 34.56313 * 3 2 1 5 5 C 1.50701 * 109.46839 * 154.56593 * 3 2 1 6 6 O 1.21276 * 120.00331 * 32.72738 * 5 3 2 7 7 N 1.34779 * 119.99422 * 212.72726 * 5 3 2 8 8 C 1.46924 * 120.63502 * 5.71045 * 7 5 3 9 9 C 1.53183 * 108.89513 * 126.46011 * 8 7 5 10 10 C 1.53048 * 109.31432 * 54.56219 * 9 8 7 11 11 C 1.53042 * 109.53775 * 298.63687 * 10 9 8 12 12 C 1.46965 * 120.64811 * 185.52609 * 7 5 3 13 13 H 1.09000 * 109.46730 * 113.75529 * 12 7 5 14 14 C 1.53002 * 109.59691 * 353.39339 * 12 7 5 15 15 C 1.53004 * 109.46779 * 178.10618 * 14 12 7 16 16 N 1.46503 * 109.46677 * 185.25559 * 15 14 12 17 17 C 1.36935 * 120.00114 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99462 * 0.02562 * 17 16 15 19 19 C 1.38806 * 120.00406 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99885 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00377 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47078 * 59.99703 * 21 19 17 23 23 H 1.48500 * 109.47331 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47099 * 300.00114 * 21 19 17 25 25 C 1.53006 * 109.46927 * 274.55957 * 3 2 1 26 26 C 1.54266 * 110.03470 * 294.49980 * 25 3 2 27 27 C 1.54961 * 104.15741 * 217.13761 * 26 25 3 28 28 C 1.54884 * 102.78064 * 37.88798 * 27 26 25 29 29 C 1.53867 * 110.03032 * 177.27691 * 25 3 2 30 30 H 1.09003 * 109.47139 * 184.99392 * 1 2 3 31 31 H 1.09000 * 109.47229 * 304.98510 * 1 2 3 32 32 H 1.08996 * 109.47679 * 64.98775 * 1 2 3 33 33 H 1.09004 * 109.58464 * 6.60301 * 8 7 5 34 34 H 1.08998 * 109.58218 * 246.32015 * 8 7 5 35 35 H 1.08996 * 109.50214 * 174.51627 * 9 8 7 36 36 H 1.09006 * 109.50017 * 294.61608 * 9 8 7 37 37 H 1.08999 * 109.45519 * 58.65571 * 10 9 8 38 38 H 1.08999 * 109.45899 * 178.61526 * 10 9 8 39 39 H 1.08997 * 109.49524 * 181.31150 * 11 10 9 40 40 H 1.08995 * 109.49376 * 301.40899 * 11 10 9 41 41 H 1.08997 * 109.47104 * 298.10669 * 14 12 7 42 42 H 1.08997 * 109.46586 * 58.10937 * 14 12 7 43 43 H 1.08998 * 109.47341 * 305.25584 * 15 14 12 44 44 H 1.08999 * 109.47113 * 65.25988 * 15 14 12 45 45 H 0.97003 * 119.99846 * 0.02562 * 16 15 14 46 46 H 0.96995 * 120.00210 * 179.97438 * 20 19 17 47 47 H 1.09004 * 110.01443 * 55.88795 * 25 3 2 48 48 H 1.09009 * 110.48108 * 335.78019 * 26 25 3 49 49 H 1.08997 * 110.48933 * 98.42621 * 26 25 3 50 50 H 1.09004 * 110.72049 * 279.56863 * 27 26 25 51 51 H 1.09009 * 110.76518 * 156.22228 * 27 26 25 52 52 H 1.08999 * 110.48868 * 203.41189 * 28 27 26 53 53 H 1.08998 * 110.49067 * 80.76130 * 28 27 26 54 54 H 1.09003 * 110.03495 * 238.56791 * 29 25 3 55 55 H 1.09000 * 110.03852 * 359.95695 * 29 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3849 1.9817 0.5830 5 6 3.3867 1.2426 0.6102 6 8 4.0676 0.2489 0.4695 7 7 3.8610 2.2907 1.3124 8 6 3.0045 3.4498 1.5979 9 6 3.0128 3.7130 3.1069 10 6 4.4582 3.8666 3.5860 11 6 5.2269 2.5707 3.3175 12 6 5.2436 2.2945 1.8107 13 1 5.8107 3.0744 1.3026 14 6 5.8882 0.9324 1.5461 15 6 7.3418 0.9549 2.0232 16 7 7.9953 -0.3042 1.6572 17 6 9.3086 -0.5141 1.9835 18 1 9.8624 0.2484 2.5111 19 6 9.9279 -1.7068 1.6364 20 7 9.2531 -2.6359 0.9930 21 14 11.7192 -1.9935 2.0821 22 1 11.8799 -1.9217 3.5567 23 1 12.1402 -3.3343 1.6024 24 1 12.5616 -0.9520 1.4412 25 6 2.1128 1.8181 -1.4380 26 6 3.1043 0.9493 -2.2392 27 6 3.8317 1.9585 -3.1631 28 6 3.9884 3.2032 -2.2548 29 6 2.6742 3.2506 -1.4481 30 1 -0.3633 -1.0238 0.0895 31 1 -0.3634 0.5892 0.8420 32 1 -0.3634 0.4345 -0.9312 33 1 1.9863 3.2416 1.2690 34 1 3.3867 4.3247 1.0722 35 1 2.4599 4.6279 3.3198 36 1 2.5450 2.8757 3.6250 37 1 4.9331 4.6882 3.0498 38 1 4.4658 4.0784 4.6552 39 1 6.2497 2.6726 3.6800 40 1 4.7381 1.7443 3.8335 41 1 5.3405 0.1602 2.0862 42 1 5.8597 0.7184 0.4778 43 1 7.8660 1.7865 1.5524 44 1 7.3670 1.0759 3.1062 45 1 7.4977 -0.9892 1.1837 46 1 9.6860 -3.4692 0.7500 47 1 1.1315 1.7982 -1.9121 48 1 3.8148 0.4650 -1.5692 49 1 2.5691 0.2065 -2.8308 50 1 3.2216 2.1914 -4.0359 51 1 4.8067 1.5743 -3.4635 52 1 4.0983 4.1043 -2.8581 53 1 4.8417 3.0834 -1.5873 54 1 1.9658 3.9260 -1.9279 55 1 2.8729 3.5811 -0.4286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753789111.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:05 Heat of formation + Delta-G solvation = -80.326131 kcal Electronic energy + Delta-G solvation = -32468.751358 eV Core-core repulsion = 28505.450470 eV Total energy + Delta-G solvation = -3963.300888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.15183 -39.72402 -38.19007 -37.85652 -36.97133 -34.67537 -33.88333 -32.53671 -31.33563 -29.65244 -29.25230 -28.01807 -26.83263 -25.68351 -25.28976 -23.97658 -22.32658 -22.06892 -21.58480 -21.07151 -19.53318 -19.21459 -18.03474 -17.91049 -17.31528 -16.86959 -16.50974 -16.31041 -15.97906 -15.64776 -15.47419 -15.46583 -15.25760 -15.08213 -14.81283 -14.63498 -14.38558 -14.31374 -13.98016 -13.66018 -13.53095 -13.36513 -12.94387 -12.79062 -12.72271 -12.60894 -12.33375 -12.23317 -12.17751 -12.02009 -11.92896 -11.91605 -11.89500 -11.81018 -11.68438 -11.65368 -11.51600 -11.34771 -11.29850 -10.93290 -10.60209 -9.81228 -9.49532 -9.03171 -7.95532 -5.27057 1.43138 1.48990 1.55206 1.57838 1.80949 2.54444 2.91093 3.36323 3.42584 3.52883 3.61282 3.74615 3.79455 3.86538 3.92239 4.00056 4.11162 4.15121 4.25084 4.29857 4.41313 4.46709 4.48954 4.50979 4.54933 4.59448 4.63418 4.68711 4.71622 4.72850 4.76829 4.80223 4.84504 4.88028 4.92040 4.95948 5.02761 5.04066 5.10876 5.17473 5.20885 5.24928 5.33865 5.38189 5.39322 5.42163 5.46963 5.50794 5.54233 5.71057 6.10288 6.24803 6.48680 7.28346 7.29729 8.06141 8.30926 9.28592 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.003432 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.485161 B = 8155.527252 C = 9139.013264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.398 6.398 3 C 0.078 3.922 4 H 0.114 0.886 5 C 0.508 3.492 6 O -0.552 6.552 7 N -0.602 5.602 8 C 0.091 3.909 9 C -0.131 4.131 10 C -0.114 4.114 11 C -0.130 4.130 12 C 0.161 3.839 13 H 0.082 0.918 14 C -0.089 4.089 15 C 0.149 3.851 16 N -0.749 5.749 17 C -0.251 4.251 18 H 0.079 0.921 19 C -0.081 4.081 20 N -0.975 5.975 21 Si 0.983 3.017 22 H -0.274 1.274 23 H -0.294 1.294 24 H -0.274 1.274 25 C -0.099 4.099 26 C -0.135 4.135 27 C -0.124 4.124 28 C -0.122 4.122 29 C -0.131 4.131 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.039 0.961 42 H 0.056 0.944 43 H 0.019 0.981 44 H 0.023 0.977 45 H 0.368 0.632 46 H 0.251 0.749 47 H 0.105 0.895 48 H 0.049 0.951 49 H 0.057 0.943 50 H 0.084 0.916 51 H 0.043 0.957 52 H 0.084 0.916 53 H 0.039 0.961 54 H 0.099 0.901 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.634 21.915 -1.504 33.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C 0.018 3.982 4 H 0.131 0.869 5 C 0.297 3.703 6 O -0.430 6.430 7 N -0.336 5.336 8 C -0.030 4.030 9 C -0.169 4.169 10 C -0.152 4.152 11 C -0.169 4.169 12 C 0.057 3.943 13 H 0.100 0.900 14 C -0.127 4.127 15 C 0.022 3.978 16 N -0.391 5.391 17 C -0.383 4.383 18 H 0.097 0.903 19 C -0.273 4.273 20 N -0.625 5.625 21 Si 0.810 3.190 22 H -0.200 1.200 23 H -0.220 1.220 24 H -0.200 1.200 25 C -0.118 4.118 26 C -0.172 4.172 27 C -0.162 4.162 28 C -0.160 4.160 29 C -0.168 4.168 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.037 0.963 44 H 0.041 0.959 45 H 0.199 0.801 46 H 0.060 0.940 47 H 0.123 0.877 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.103 0.897 51 H 0.062 0.938 52 H 0.102 0.898 53 H 0.058 0.942 54 H 0.117 0.883 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.028 21.283 -1.494 32.133 hybrid contribution 1.006 -1.362 -0.082 1.695 sum -23.022 19.922 -1.576 30.485 Atomic orbital electron populations 1.23094 0.78695 1.03951 1.01692 1.88049 1.21936 1.26544 1.95153 1.22365 0.91902 0.86470 0.97489 0.86914 1.20835 0.88923 0.82543 0.78025 1.90842 1.59143 1.33238 1.59752 1.48208 1.12908 1.19154 1.53365 1.22336 0.95322 0.87955 0.97340 1.21956 0.97140 1.03443 0.94378 1.21520 0.95384 0.95967 1.02284 1.22010 1.01691 0.99229 0.93958 1.21135 0.81453 0.96398 0.95292 0.89967 1.21893 0.93283 0.96350 1.01160 1.20975 0.92510 0.87722 0.96608 1.42651 1.10229 1.16860 1.69388 1.19690 0.88579 1.00262 1.29734 0.90280 1.25741 1.03205 0.96561 1.01767 1.69887 1.37962 1.07923 1.46758 0.85081 0.79115 0.76663 0.78102 1.19973 1.22001 1.19954 1.22200 1.00963 0.95795 0.92864 1.22544 0.98379 0.97923 0.98385 1.22508 0.99583 0.95711 0.98399 1.22299 0.97606 0.98096 0.97954 1.22558 0.96973 0.94756 1.02472 0.89196 0.91974 0.92039 0.87588 0.88414 0.87241 0.92516 0.90302 0.90551 0.90899 0.93383 0.94219 0.92508 0.96321 0.95948 0.80075 0.94002 0.87667 0.93267 0.92378 0.89742 0.93784 0.89777 0.94216 0.88295 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.84 113.37 1.23 1.56 16 2 O -0.40 -10.55 9.90 -132.37 -1.31 -11.86 16 3 C 0.08 1.69 1.95 29.85 0.06 1.75 16 4 H 0.11 1.50 5.25 -2.39 -0.01 1.49 16 5 C 0.51 15.24 5.56 87.66 0.49 15.73 16 6 O -0.55 -23.56 10.31 13.59 0.14 -23.42 16 7 N -0.60 -14.16 2.76 -794.94 -2.19 -16.36 16 8 C 0.09 1.10 4.33 86.36 0.37 1.48 16 9 C -0.13 -1.43 6.08 30.67 0.19 -1.24 16 10 C -0.11 -1.66 5.88 30.62 0.18 -1.48 16 11 C -0.13 -3.15 4.92 30.67 0.15 -3.00 16 12 C 0.16 4.58 2.98 44.97 0.13 4.71 16 13 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 14 C -0.09 -3.68 3.24 30.60 0.10 -3.58 16 15 C 0.15 6.91 5.82 86.38 0.50 7.42 16 16 N -0.75 -44.37 5.60 -343.45 -1.92 -46.30 16 17 C -0.25 -15.50 9.99 84.03 0.84 -14.66 16 18 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 19 C -0.08 -5.07 5.50 84.86 0.47 -4.60 16 20 N -0.97 -65.61 13.06 21.65 0.28 -65.32 16 21 Si 0.98 49.22 29.55 68.60 2.03 51.24 16 22 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 24 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 25 C -0.10 -1.84 2.89 -10.07 -0.03 -1.87 16 26 C -0.13 -3.63 5.99 31.69 0.19 -3.44 16 27 C -0.12 -2.84 6.91 31.91 0.22 -2.62 16 28 C -0.12 -2.35 6.83 31.67 0.22 -2.13 16 29 C -0.13 -1.81 6.05 31.32 0.19 -1.62 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 0.67 7.97 -2.39 -0.02 0.65 16 32 H 0.06 0.68 7.59 -2.39 -0.02 0.67 16 33 H 0.11 0.81 4.93 -2.38 -0.01 0.80 16 34 H 0.10 0.82 7.20 -2.39 -0.02 0.80 16 35 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.86 6.93 -2.39 -0.02 1.85 16 40 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.04 1.87 7.16 -2.39 -0.02 1.85 16 42 H 0.06 2.72 6.30 -2.39 -0.02 2.71 16 43 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.02 1.01 6.91 -2.39 -0.02 1.00 16 45 H 0.37 23.94 7.67 -92.71 -0.71 23.23 16 46 H 0.25 16.25 8.31 -92.71 -0.77 15.48 16 47 H 0.11 1.45 7.57 -2.39 -0.02 1.43 16 48 H 0.05 1.82 5.23 -2.38 -0.01 1.81 16 49 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 51 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 52 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 53 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 54 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 55 H 0.09 1.05 2.93 -2.39 -0.01 1.04 16 Total: -1.00 -85.66 402.05 2.68 -82.97 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: 0.16 Total: 36.65 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 5.50 Total: -7.60 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -3.83 Total: -127.98 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -1.17 Total: -35.29 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.03 Total: 51.24 kcal Total: -85.66 2.68 -82.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753789111.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.647 kcal (2) G-P(sol) polarization free energy of solvation -85.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds