Wall clock time and date at job start Tue Mar 31 2020 22:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 114.00022 * 2 1 4 4 C 1.53000 * 109.47368 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47185 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46662 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46534 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00402 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99900 * 179.97438 * 7 6 5 10 10 C 1.46923 * 120.62974 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.77507 * 233.62989 * 10 9 7 12 12 C 1.53042 * 109.31223 * 305.36713 * 11 10 9 13 13 C 1.52995 * 109.46120 * 181.38722 * 12 11 10 14 14 H 1.09003 * 110.88674 * 300.69812 * 13 12 11 15 15 C 1.55161 * 111.03566 * 176.79606 * 13 12 11 16 16 C 1.54330 * 102.93782 * 206.40505 * 15 13 12 17 17 N 1.47016 * 107.27172 * 22.19531 * 16 15 13 18 18 C 1.36942 * 125.64802 * 181.02356 * 17 16 15 19 19 H 1.07994 * 120.00226 * 173.97749 * 18 17 16 20 20 C 1.38816 * 119.99874 * 353.97887 * 18 17 16 21 21 N 1.31618 * 119.99812 * 6.84240 * 20 18 17 22 22 Si 1.86799 * 119.99926 * 186.84997 * 20 18 17 23 23 H 1.48507 * 109.47036 * 94.98494 * 22 20 18 24 24 H 1.48494 * 109.46886 * 214.98118 * 22 20 18 25 25 H 1.48494 * 109.47037 * 334.98275 * 22 20 18 26 26 C 1.47422 * 108.70424 * 1.05358 * 17 16 15 27 27 C 1.53040 * 109.53804 * 61.36381 * 12 11 10 28 28 C 1.46925 * 120.62939 * 0.02562 * 9 7 6 29 29 H 1.09008 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47320 * 299.99997 * 1 2 3 31 31 H 1.09003 * 109.47364 * 60.00207 * 1 2 3 32 32 H 1.08998 * 109.46896 * 59.99695 * 3 2 1 33 33 H 1.08995 * 109.46962 * 300.00268 * 3 2 1 34 34 H 1.09005 * 109.46575 * 59.99820 * 4 3 2 35 35 H 1.09000 * 109.47215 * 300.00559 * 4 3 2 36 36 H 1.08998 * 109.46912 * 60.00053 * 5 4 3 37 37 H 1.09001 * 109.46817 * 299.99906 * 5 4 3 38 38 H 1.08990 * 109.47431 * 60.00258 * 6 5 4 39 39 H 1.09001 * 109.47095 * 299.99329 * 6 5 4 40 40 H 1.08996 * 109.58690 * 113.84387 * 10 9 7 41 41 H 1.08999 * 109.70902 * 353.48285 * 10 9 7 42 42 H 1.09000 * 109.50380 * 185.41298 * 11 10 9 43 43 H 1.09002 * 109.52511 * 65.32871 * 11 10 9 44 44 H 1.09001 * 109.45560 * 301.35733 * 12 11 10 45 45 H 1.08991 * 110.72248 * 324.76699 * 15 13 12 46 46 H 1.09004 * 110.71847 * 88.04679 * 15 13 12 47 47 H 1.08997 * 109.88403 * 262.77179 * 16 15 13 48 48 H 1.09008 * 110.00537 * 141.68503 * 16 15 13 49 49 H 0.97006 * 119.99701 * 180.02562 * 21 20 18 50 50 H 1.09002 * 110.36880 * 217.02999 * 26 17 16 51 51 H 1.09001 * 110.45854 * 94.76457 * 26 17 16 52 52 H 1.08996 * 109.49907 * 58.59160 * 27 12 11 53 53 H 1.09008 * 109.49605 * 178.68619 * 27 12 11 54 54 H 1.08996 * 109.58493 * 246.15617 * 28 9 7 55 55 H 1.08997 * 109.58431 * 6.58426 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0000 6 6 5.6829 2.4616 0.0000 7 6 6.2958 3.8384 0.0000 8 8 5.5829 4.8196 -0.0005 9 7 7.6362 3.9793 0.0005 10 6 8.2484 5.3149 0.0000 11 6 9.2363 5.4039 -1.1675 12 6 10.2398 4.2525 -1.0704 13 6 11.2491 4.3580 -2.2154 14 1 10.7463 4.3178 -3.1817 15 6 12.3329 3.2531 -2.1060 16 6 13.5430 3.8835 -2.8271 17 7 13.3532 5.3412 -2.8055 18 6 14.1987 6.2645 -3.3605 19 1 13.9228 7.3084 -3.3766 20 6 15.4104 5.8584 -3.9025 21 7 15.6885 4.5761 -4.0055 22 14 16.6464 7.1320 -4.4855 23 1 17.6258 7.4032 -3.4026 24 1 17.3606 6.6174 -5.6814 25 1 15.9354 8.3877 -4.8357 26 6 12.1023 5.6445 -2.0867 27 6 9.4977 2.9175 -1.1663 28 6 8.5128 2.8003 0.0005 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8899 34 1 3.8573 0.6436 -0.8892 35 1 3.8567 0.6439 0.8908 36 1 3.8357 3.1239 0.8895 37 1 3.8363 3.1228 -0.8905 38 1 6.0045 1.9204 -0.8897 39 1 6.0045 1.9212 0.8903 40 1 8.7776 5.4747 0.9393 41 1 7.4749 6.0738 -0.1173 42 1 9.7679 6.3545 -1.1228 43 1 8.6934 5.3348 -2.1102 44 1 10.7651 4.3081 -0.1170 45 1 12.5701 3.0475 -1.0623 46 1 12.0106 2.3450 -2.6155 47 1 13.5858 3.5304 -3.8574 48 1 14.4647 3.6219 -2.3072 49 1 16.5355 4.2924 -4.3839 50 1 11.5914 6.4869 -2.5530 51 1 12.3081 5.8599 -1.0382 52 1 8.9520 2.8714 -2.1087 53 1 10.2153 2.0982 -1.1206 54 1 9.0636 2.7545 0.9400 55 1 7.9122 1.8984 -0.1177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754536013.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:30 Heat of formation + Delta-G solvation = -103.180969 kcal Electronic energy + Delta-G solvation = -29523.360988 eV Core-core repulsion = 25559.069040 eV Total energy + Delta-G solvation = -3964.291948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.29764 -39.78038 -38.92578 -37.94995 -35.71695 -35.19721 -33.50867 -32.34616 -30.90907 -30.73605 -29.20302 -27.47478 -26.85372 -25.51828 -24.60837 -23.90118 -22.33449 -21.84498 -21.60837 -20.81127 -19.81436 -18.83872 -18.09581 -17.33680 -17.24265 -16.85722 -16.76094 -16.63859 -16.15448 -15.84374 -15.73838 -15.38287 -15.13056 -14.97004 -14.38691 -14.36299 -14.10652 -13.85373 -13.78804 -13.62329 -13.49131 -13.34266 -13.11265 -12.89265 -12.74437 -12.63658 -12.41656 -12.31419 -12.29746 -12.16260 -12.08628 -11.98655 -11.84753 -11.80603 -11.59439 -11.57198 -11.32075 -11.11701 -11.01990 -10.69080 -10.68028 -10.61593 -9.58538 -8.86702 -7.86425 -5.20198 1.44172 1.46068 1.54970 1.67761 2.06732 2.49109 2.83387 3.31574 3.59014 3.63847 3.76168 3.86184 3.93398 3.98963 3.99920 4.17676 4.23925 4.32234 4.33787 4.36346 4.41230 4.45939 4.47700 4.51939 4.53337 4.55049 4.65728 4.73939 4.75674 4.79440 4.83795 4.86763 4.87784 4.90169 4.94122 5.00690 5.01488 5.06467 5.10330 5.15146 5.20929 5.30876 5.34357 5.40851 5.44599 5.46252 5.62335 5.64455 5.74275 5.80732 6.21684 6.23182 6.48933 7.11498 7.22219 7.80154 8.45006 9.24432 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.030509 B = 0.001642 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.547176 B =17046.093450 C =17483.025319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.055 3.945 4 C -0.111 4.111 5 C -0.096 4.096 6 C -0.132 4.132 7 C 0.506 3.494 8 O -0.593 6.593 9 N -0.611 5.611 10 C 0.114 3.886 11 C -0.122 4.122 12 C -0.064 4.064 13 C -0.078 4.078 14 H 0.063 0.937 15 C -0.119 4.119 16 C 0.180 3.820 17 N -0.631 5.631 18 C -0.245 4.245 19 H 0.079 0.921 20 C -0.065 4.065 21 N -0.949 5.949 22 Si 0.976 3.024 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.269 1.269 26 C 0.137 3.863 27 C -0.126 4.126 28 C 0.106 3.894 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.001 0.999 48 H 0.005 0.995 49 H 0.246 0.754 50 H 0.032 0.968 51 H 0.024 0.976 52 H 0.062 0.938 53 H 0.092 0.908 54 H 0.085 0.915 55 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.475 -10.630 11.868 30.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.021 4.021 4 C -0.148 4.148 5 C -0.134 4.134 6 C -0.172 4.172 7 C 0.297 3.703 8 O -0.474 6.474 9 N -0.343 5.343 10 C -0.008 4.008 11 C -0.161 4.161 12 C -0.083 4.083 13 C -0.098 4.098 14 H 0.081 0.919 15 C -0.157 4.157 16 C 0.055 3.945 17 N -0.357 5.357 18 C -0.375 4.375 19 H 0.097 0.903 20 C -0.259 4.259 21 N -0.598 5.598 22 Si 0.804 3.196 23 H -0.213 1.213 24 H -0.220 1.220 25 H -0.193 1.193 26 C 0.012 3.988 27 C -0.164 4.164 28 C -0.015 4.015 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.099 0.901 47 H 0.019 0.981 48 H 0.024 0.976 49 H 0.056 0.944 50 H 0.050 0.950 51 H 0.041 0.959 52 H 0.081 0.919 53 H 0.111 0.889 54 H 0.103 0.897 55 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -26.544 -10.269 11.767 30.798 hybrid contribution 1.050 1.254 -0.797 1.820 sum -25.494 -9.014 10.969 29.181 Atomic orbital electron populations 1.22911 0.79743 1.03771 1.00709 1.87819 1.21297 1.28991 1.95595 1.22640 0.94678 0.84187 1.00619 1.21451 0.92577 0.96821 1.03965 1.21150 0.93448 0.96213 1.02595 1.21730 0.95997 0.92819 1.06635 1.21385 0.81705 0.92613 0.74607 1.90667 1.61570 1.42738 1.52436 1.48309 1.05666 1.08038 1.72318 1.21511 0.95904 0.84681 0.98749 1.21889 0.96641 0.99381 0.98160 1.21006 0.94289 0.95358 0.97640 1.22221 0.94461 0.94431 0.98670 0.91884 1.22745 0.94577 0.97836 1.00572 1.20958 0.94471 0.82921 0.96150 1.44843 1.23866 1.02807 1.64219 1.19471 0.97320 0.89644 1.31026 0.90348 1.25655 0.99757 0.98150 1.02290 1.70211 1.23738 1.14452 1.51438 0.85100 0.79051 0.78437 0.77030 1.21342 1.22018 1.19330 1.21764 0.86145 0.96514 0.94407 1.21947 0.98338 0.97285 0.98830 1.22014 0.92567 0.87606 0.99340 0.88534 0.93315 0.93453 0.92893 0.93142 0.90582 0.90247 0.92114 0.92518 0.86663 0.86161 0.90430 0.90937 0.91038 0.92685 0.90411 0.90722 0.90068 0.98078 0.97627 0.94439 0.94989 0.95869 0.91893 0.88936 0.89661 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -6.64 10.70 -148.98 -1.59 -8.23 16 3 C 0.06 0.72 5.94 71.98 0.43 1.15 16 4 C -0.11 -1.23 5.58 30.59 0.17 -1.06 16 5 C -0.10 -1.29 4.50 30.59 0.14 -1.15 16 6 C -0.13 -1.52 4.05 29.85 0.12 -1.40 16 7 C 0.51 10.19 7.70 87.66 0.67 10.86 16 8 O -0.59 -17.22 15.40 -3.03 -0.05 -17.27 16 9 N -0.61 -10.93 2.97 -819.01 -2.43 -13.36 16 10 C 0.11 2.35 6.43 86.36 0.56 2.91 16 11 C -0.12 -2.73 5.21 30.67 0.16 -2.57 16 12 C -0.06 -1.40 1.65 -10.77 -0.02 -1.42 16 13 C -0.08 -2.44 2.56 -9.40 -0.02 -2.47 16 14 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 15 C -0.12 -4.03 5.42 31.79 0.17 -3.86 16 16 C 0.18 8.93 5.38 86.73 0.47 9.40 16 17 N -0.63 -33.04 3.39 -692.00 -2.35 -35.38 16 18 C -0.25 -14.14 10.26 84.03 0.86 -13.28 16 19 H 0.08 4.34 7.84 -2.91 -0.02 4.32 16 20 C -0.07 -3.81 5.48 84.86 0.47 -3.34 16 21 N -0.95 -58.16 10.36 21.65 0.22 -57.94 16 22 Si 0.98 46.55 29.56 68.60 2.03 48.58 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 26 C 0.14 5.49 5.80 86.85 0.50 6.00 16 27 C -0.13 -2.01 5.20 30.66 0.16 -1.85 16 28 C 0.11 1.26 6.34 86.35 0.55 1.81 16 29 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 37 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 38 H 0.12 0.91 7.69 -2.39 -0.02 0.90 16 39 H 0.12 0.79 7.94 -2.39 -0.02 0.77 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.77 7.01 -2.39 -0.02 1.75 16 42 H 0.07 1.70 7.32 -2.39 -0.02 1.68 16 43 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.08 1.68 8.13 -2.39 -0.02 1.66 16 45 H 0.07 2.27 8.04 -2.39 -0.02 2.25 16 46 H 0.08 2.38 8.10 -2.38 -0.02 2.36 16 47 H 0.00 0.05 7.54 -2.39 -0.02 0.04 16 48 H 0.01 0.31 7.36 -2.38 -0.02 0.29 16 49 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 50 H 0.03 1.28 8.02 -2.39 -0.02 1.27 16 51 H 0.02 0.92 8.03 -2.39 -0.02 0.90 16 52 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.09 1.32 7.32 -2.38 -0.02 1.30 16 54 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 55 H 0.11 0.72 5.93 -2.39 -0.01 0.70 16 Total: -1.00 -76.32 420.72 3.28 -73.04 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.82 Total: 9.35 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 6.63 Total: 1.21 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -4.56 Total: -106.69 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -1.64 Total: -25.50 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -76.32 3.28 -73.04 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754536013.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.138 kcal (2) G-P(sol) polarization free energy of solvation -76.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds