Wall clock time and date at job start Tue Mar 31 2020 22:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 113.99940 * 2 1 4 4 C 1.52996 * 109.47276 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47603 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47603 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47326 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99983 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00017 * 179.97438 * 7 6 5 10 10 C 1.46922 * 120.63235 * 2.02027 * 9 7 6 11 11 C 1.53189 * 108.77749 * 126.39037 * 10 9 7 12 12 C 1.53039 * 109.31576 * 54.63500 * 11 10 9 13 13 C 1.53043 * 109.53795 * 298.63983 * 12 11 10 14 14 C 1.46928 * 120.62841 * 182.01895 * 9 7 6 15 15 H 1.09001 * 109.70610 * 113.75419 * 14 9 7 16 16 C 1.52997 * 109.58943 * 353.39676 * 14 9 7 17 17 H 1.08996 * 110.77753 * 54.81864 * 16 14 9 18 18 C 1.55154 * 110.71772 * 291.57518 * 16 14 9 19 19 C 1.54917 * 101.58172 * 206.13170 * 18 16 14 20 20 N 1.47418 * 104.82772 * 37.01284 * 19 18 16 21 21 C 1.36937 * 125.64784 * 155.82337 * 20 19 18 22 22 H 1.08002 * 120.00475 * 180.02562 * 21 20 19 23 23 C 1.38814 * 119.99858 * 0.02798 * 21 20 19 24 24 N 1.31616 * 119.99743 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00119 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46797 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47233 * 119.99673 * 25 23 21 28 28 H 1.48500 * 109.46919 * 239.99667 * 25 23 21 29 29 C 1.47027 * 108.70844 * 335.87341 * 20 19 18 30 30 H 1.08996 * 109.46931 * 59.99860 * 1 2 3 31 31 H 1.09002 * 109.46783 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46764 * 299.99572 * 1 2 3 33 33 H 1.09007 * 109.47239 * 60.00300 * 3 2 1 34 34 H 1.08999 * 109.47323 * 300.00131 * 3 2 1 35 35 H 1.09003 * 109.47259 * 60.00255 * 4 3 2 36 36 H 1.09008 * 109.47065 * 300.00159 * 4 3 2 37 37 H 1.09003 * 109.46901 * 59.99674 * 5 4 3 38 38 H 1.09003 * 109.46765 * 300.00489 * 5 4 3 39 39 H 1.08999 * 109.46849 * 59.99285 * 6 5 4 40 40 H 1.09001 * 109.46575 * 300.00269 * 6 5 4 41 41 H 1.08994 * 109.59013 * 6.60145 * 10 9 7 42 42 H 1.09001 * 109.70295 * 246.24525 * 10 9 7 43 43 H 1.09001 * 109.49774 * 294.68568 * 11 10 9 44 44 H 1.09000 * 109.50169 * 174.58677 * 11 10 9 45 45 H 1.08995 * 109.46434 * 178.61353 * 12 11 10 46 46 H 1.09004 * 109.46010 * 58.65631 * 12 11 10 47 47 H 1.09002 * 109.49051 * 301.41006 * 13 12 11 48 48 H 1.08994 * 109.52396 * 181.32879 * 13 12 11 49 49 H 1.08991 * 111.00922 * 324.20787 * 18 16 14 50 50 H 1.09002 * 111.00316 * 88.06582 * 18 16 14 51 51 H 1.08999 * 110.36666 * 155.85104 * 19 18 16 52 52 H 1.08997 * 110.36653 * 278.06880 * 19 18 16 53 53 H 0.97006 * 119.99482 * 180.02562 * 24 23 21 54 54 H 1.09002 * 109.87953 * 241.64753 * 29 20 19 55 55 H 1.08990 * 109.88512 * 120.47814 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6830 2.4616 0.0000 7 6 6.2959 3.8383 0.0000 8 8 5.5830 4.8195 0.0005 9 7 7.6363 3.9792 0.0005 10 6 8.5128 2.8009 -0.0435 11 6 9.4938 2.9594 -1.2094 12 6 10.2362 4.2902 -1.0690 13 6 9.2325 5.4443 -1.1219 14 6 8.2486 5.3140 0.0451 15 1 8.7806 5.4431 0.9876 16 6 7.1603 6.3821 -0.0800 17 1 6.3925 6.2427 0.6810 18 6 6.5354 6.3653 -1.5000 19 6 6.0387 7.8262 -1.6385 20 7 7.0675 8.6398 -0.9656 21 6 7.3263 9.9618 -1.2115 22 1 8.1051 10.4708 -0.6629 23 6 6.5878 10.6478 -2.1658 24 7 5.6390 10.0275 -2.8347 25 14 6.9413 12.4511 -2.5019 26 1 8.0479 12.9104 -1.6244 27 1 7.3332 12.6220 -3.9240 28 1 5.7237 13.2544 -2.2240 29 6 7.7704 7.7966 0.0125 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5137 0.8900 33 1 1.6886 1.8464 0.8901 34 1 1.6886 1.8463 -0.8900 35 1 3.8567 0.6439 -0.8909 36 1 3.8574 0.6435 0.8892 37 1 3.8365 3.1228 0.8904 38 1 3.8358 3.1239 -0.8895 39 1 6.0046 1.9210 -0.8902 40 1 6.0045 1.9203 0.8898 41 1 7.9119 1.9037 -0.1909 42 1 9.0669 2.7200 0.8917 43 1 8.9448 2.9467 -2.1510 44 1 10.2115 2.1391 -1.1951 45 1 10.9525 4.3942 -1.8839 46 1 10.7650 4.3123 -0.1161 47 1 8.6860 5.4082 -2.0643 48 1 9.7639 6.3929 -1.0456 49 1 7.2870 6.1350 -2.2550 50 1 5.7032 5.6632 -1.5524 51 1 5.9637 8.1033 -2.6900 52 1 5.0743 7.9473 -1.1452 53 1 5.1232 10.5068 -3.5018 54 1 7.6284 8.1966 1.0165 55 1 8.8330 7.7585 -0.2268 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754537636.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:04 Heat of formation + Delta-G solvation = -59.922057 kcal Electronic energy + Delta-G solvation = -31272.751228 eV Core-core repulsion = 27310.335127 eV Total energy + Delta-G solvation = -3962.416101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.87911 -39.14654 -38.78760 -38.13850 -35.80968 -34.79804 -33.75247 -32.62481 -30.69478 -30.61757 -28.93195 -27.56443 -26.63784 -25.70519 -24.90698 -23.90865 -22.30810 -22.20709 -21.59497 -20.79264 -19.50245 -18.90182 -17.52611 -17.33946 -17.23138 -16.99934 -16.70678 -16.65727 -16.29683 -15.83592 -15.63498 -15.46192 -15.11978 -14.86598 -14.72145 -14.34215 -14.18377 -14.05151 -13.76468 -13.57908 -13.32263 -13.27222 -12.98262 -12.88368 -12.72117 -12.54597 -12.40903 -12.26712 -12.19273 -12.07046 -11.99898 -11.87240 -11.82090 -11.60305 -11.57294 -11.49586 -11.40770 -11.16624 -11.02105 -10.72839 -10.62409 -9.80899 -9.30365 -8.86960 -7.76223 -5.22309 1.42230 1.45046 1.55420 1.81924 2.10915 2.48542 2.82886 3.30736 3.57990 3.77713 3.85431 3.91405 4.00489 4.01547 4.06082 4.13759 4.23250 4.33480 4.34922 4.36800 4.39904 4.43717 4.46144 4.52685 4.55444 4.61669 4.71795 4.73776 4.77523 4.79291 4.84657 4.86583 4.89678 4.94114 4.96314 5.02025 5.04911 5.16541 5.25921 5.26619 5.30870 5.33689 5.38306 5.43553 5.46624 5.55647 5.58601 5.69950 5.83129 5.87116 6.21433 6.29717 6.65118 7.09981 7.45907 7.78694 8.46007 9.25320 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010084 B = 0.002958 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.966396 B = 9463.758966 C =11792.824088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.054 3.946 4 C -0.106 4.106 5 C -0.098 4.098 6 C -0.126 4.126 7 C 0.488 3.512 8 O -0.555 6.555 9 N -0.606 5.606 10 C 0.103 3.897 11 C -0.131 4.131 12 C -0.114 4.114 13 C -0.134 4.134 14 C 0.168 3.832 15 H 0.080 0.920 16 C -0.073 4.073 17 H 0.086 0.914 18 C -0.111 4.111 19 C 0.162 3.838 20 N -0.625 5.625 21 C -0.238 4.238 22 H 0.081 0.919 23 C -0.075 4.075 24 N -0.952 5.952 25 Si 0.985 3.015 26 H -0.264 1.264 27 H -0.288 1.288 28 H -0.293 1.293 29 C 0.127 3.873 30 H 0.045 0.955 31 H 0.100 0.900 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.053 0.947 48 H 0.059 0.941 49 H 0.052 0.948 50 H 0.082 0.918 51 H 0.064 0.936 52 H -0.034 1.034 53 H 0.245 0.755 54 H 0.007 0.993 55 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.144 -26.562 6.831 27.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C -0.022 4.022 4 C -0.144 4.144 5 C -0.136 4.136 6 C -0.165 4.165 7 C 0.279 3.721 8 O -0.434 6.434 9 N -0.340 5.340 10 C -0.018 4.018 11 C -0.169 4.169 12 C -0.152 4.152 13 C -0.173 4.173 14 C 0.064 3.936 15 H 0.097 0.903 16 C -0.092 4.092 17 H 0.104 0.896 18 C -0.149 4.149 19 C 0.037 3.963 20 N -0.350 5.350 21 C -0.367 4.367 22 H 0.099 0.901 23 C -0.266 4.266 24 N -0.602 5.602 25 Si 0.813 3.187 26 H -0.189 1.189 27 H -0.215 1.215 28 H -0.220 1.220 29 C 0.002 3.998 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.138 0.862 41 H 0.130 0.870 42 H 0.104 0.896 43 H 0.074 0.926 44 H 0.121 0.879 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.070 0.930 50 H 0.100 0.900 51 H 0.082 0.918 52 H -0.016 1.016 53 H 0.055 0.945 54 H 0.025 0.975 55 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.843 -26.067 6.738 27.074 hybrid contribution -0.605 2.035 -0.392 2.159 sum 2.238 -24.033 6.346 24.957 Atomic orbital electron populations 1.22915 0.79816 1.03837 1.00599 1.87803 1.21218 1.28761 1.95579 1.22634 0.94977 0.84200 1.00383 1.21421 0.92244 0.96674 1.04025 1.21160 0.93979 0.96215 1.02296 1.21686 0.95512 0.93009 1.06325 1.21387 0.82064 0.92530 0.76164 1.90755 1.62487 1.40741 1.49447 1.48202 1.05646 1.07081 1.73047 1.22052 0.92866 0.87232 0.99663 1.21919 0.98716 0.97932 0.98339 1.21513 0.97034 0.93785 1.02846 1.22070 0.97326 0.99675 0.98182 1.20971 0.92638 0.81503 0.98497 0.90253 1.22448 0.96316 0.91567 0.98890 0.89598 1.23240 0.99746 0.96282 0.95641 1.21589 0.88252 0.88660 0.97760 1.44846 1.39326 1.07528 1.43336 1.19554 1.14641 0.85976 1.16532 0.90114 1.25748 0.98449 1.03063 0.99380 1.70154 1.25602 1.35908 1.28533 0.84909 0.77307 0.78983 0.77520 1.18857 1.21504 1.22001 1.21693 0.95398 0.91604 0.91112 0.93674 0.88199 0.93475 0.93193 0.93546 0.90381 0.90014 0.92520 0.93058 0.86850 0.86221 0.87015 0.89586 0.92578 0.87907 0.91434 0.90627 0.92843 0.92194 0.93012 0.90039 0.91778 1.01637 0.94523 0.97474 0.94826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.58 16 2 O -0.41 -8.05 10.70 -148.98 -1.59 -9.65 16 3 C 0.05 0.98 5.94 71.98 0.43 1.41 16 4 C -0.11 -1.62 5.58 30.59 0.17 -1.45 16 5 C -0.10 -1.87 4.50 30.59 0.14 -1.73 16 6 C -0.13 -1.96 4.06 29.84 0.12 -1.84 16 7 C 0.49 12.44 7.18 87.66 0.63 13.07 16 8 O -0.55 -20.00 9.03 -3.04 -0.03 -20.03 16 9 N -0.61 -13.53 2.96 -795.06 -2.35 -15.88 16 10 C 0.10 1.26 6.34 86.36 0.55 1.81 16 11 C -0.13 -1.69 6.08 30.67 0.19 -1.50 16 12 C -0.11 -2.02 5.88 30.62 0.18 -1.84 16 13 C -0.13 -3.67 4.77 30.67 0.15 -3.52 16 14 C 0.17 4.78 2.73 44.97 0.12 4.90 16 15 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 16 C -0.07 -2.92 2.06 -9.61 -0.02 -2.94 16 17 H 0.09 3.78 5.94 -7.08 -0.04 3.74 16 18 C -0.11 -5.00 5.40 31.99 0.17 -4.83 16 19 C 0.16 9.34 5.89 86.86 0.51 9.85 16 20 N -0.62 -36.07 3.39 -691.99 -2.35 -38.42 16 21 C -0.24 -14.49 10.27 84.03 0.86 -13.63 16 22 H 0.08 4.68 7.83 -2.91 -0.02 4.66 16 23 C -0.07 -4.55 5.49 84.86 0.47 -4.08 16 24 N -0.95 -61.45 10.09 21.65 0.22 -61.23 16 25 Si 0.99 48.48 29.55 68.60 2.03 50.51 16 26 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 28 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 29 C 0.13 5.94 6.66 86.73 0.58 6.52 16 30 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.06 1.25 8.10 -2.39 -0.02 1.24 16 38 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 39 H 0.11 1.27 7.61 -2.39 -0.02 1.25 16 40 H 0.12 1.18 8.02 -2.39 -0.02 1.16 16 41 H 0.11 0.77 5.94 -2.39 -0.01 0.75 16 42 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.05 1.72 5.66 -2.39 -0.01 1.70 16 48 H 0.06 1.85 6.49 -2.39 -0.02 1.83 16 49 H 0.05 2.27 5.40 -2.39 -0.01 2.26 16 50 H 0.08 3.67 5.46 -7.53 -0.04 3.63 16 51 H 0.06 4.10 5.87 -2.39 -0.01 4.09 16 52 H -0.03 -2.20 8.14 -2.39 -0.02 -2.22 16 53 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 54 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 55 H 0.03 1.48 6.05 -2.39 -0.01 1.46 16 Total: -1.00 -80.35 403.79 3.21 -77.14 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.79 Total: 15.78 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 6.49 Total: 1.78 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -4.48 Total: -115.54 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.62 Total: -29.68 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.51 kcal Total: -80.35 3.21 -77.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754537636.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.221 kcal (2) G-P(sol) polarization free energy of solvation -80.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds