Wall clock time and date at job start Tue Mar 31 2020 22:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 114.00216 * 2 1 4 4 C 1.52995 * 109.47519 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47533 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47014 * 179.97438 * 5 4 3 7 7 C 1.50709 * 109.46993 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99663 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00228 * 180.02562 * 7 6 5 10 10 C 1.46923 * 120.62767 * 4.81595 * 9 7 6 11 11 C 1.53191 * 108.77649 * 126.41510 * 10 9 7 12 12 C 1.53044 * 109.31197 * 54.63163 * 11 10 9 13 13 C 1.53042 * 109.53972 * 298.63521 * 12 11 10 14 14 C 1.46928 * 120.63088 * 184.83693 * 9 7 6 15 15 H 1.09002 * 109.58461 * 113.65823 * 14 9 7 16 16 C 1.52997 * 109.58742 * 353.37744 * 14 9 7 17 17 H 1.08999 * 110.91583 * 50.80523 * 16 14 9 18 18 C 1.55156 * 111.00474 * 174.70949 * 16 14 9 19 19 C 1.54328 * 102.94194 * 153.57235 * 18 16 14 20 20 N 1.47025 * 107.27228 * 337.81038 * 19 18 16 21 21 C 1.36930 * 125.64724 * 178.97722 * 20 19 18 22 22 H 1.08006 * 119.99630 * 179.97438 * 21 20 19 23 23 C 1.38807 * 120.00366 * 359.97388 * 21 20 19 24 24 N 1.31622 * 119.99913 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00324 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47341 * 89.99763 * 25 23 21 27 27 H 1.48505 * 109.46997 * 209.99696 * 25 23 21 28 28 H 1.48502 * 109.46808 * 329.99548 * 25 23 21 29 29 C 1.47429 * 108.70006 * 358.93356 * 20 19 18 30 30 H 1.08996 * 109.46995 * 60.00178 * 1 2 3 31 31 H 1.09000 * 109.47038 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47127 * 300.00104 * 1 2 3 33 33 H 1.09010 * 109.47078 * 59.99770 * 3 2 1 34 34 H 1.09005 * 109.47533 * 300.00285 * 3 2 1 35 35 H 1.08997 * 109.47306 * 59.99950 * 4 3 2 36 36 H 1.09005 * 109.47274 * 300.00196 * 4 3 2 37 37 H 1.08997 * 109.46967 * 59.99617 * 5 4 3 38 38 H 1.08996 * 109.46895 * 300.00034 * 5 4 3 39 39 H 1.08996 * 109.47137 * 60.00426 * 6 5 4 40 40 H 1.08996 * 109.47384 * 299.99816 * 6 5 4 41 41 H 1.09008 * 109.58647 * 246.19801 * 10 9 7 42 42 H 1.09001 * 109.59073 * 6.62803 * 10 9 7 43 43 H 1.08996 * 109.50235 * 174.58191 * 11 10 9 44 44 H 1.09005 * 109.49562 * 294.68373 * 11 10 9 45 45 H 1.09001 * 109.46201 * 58.65721 * 12 11 10 46 46 H 1.09002 * 109.45942 * 178.61492 * 12 11 10 47 47 H 1.09000 * 109.49851 * 301.41933 * 13 12 11 48 48 H 1.09000 * 109.50017 * 181.31656 * 13 12 11 49 49 H 1.08999 * 110.71844 * 35.20966 * 18 16 14 50 50 H 1.08997 * 110.71780 * 271.93790 * 18 16 14 51 51 H 1.09002 * 109.88132 * 97.22494 * 19 18 16 52 52 H 1.08995 * 109.88151 * 218.23368 * 19 18 16 53 53 H 0.96998 * 120.00324 * 180.02562 * 24 23 21 54 54 H 1.09004 * 110.35713 * 142.96805 * 29 20 19 55 55 H 1.08991 * 110.37306 * 265.18273 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 6 5.6830 2.4614 0.0026 7 6 6.2960 3.8382 0.0026 8 8 5.5831 4.8194 0.0012 9 7 7.6364 3.9791 0.0031 10 6 8.5125 2.8044 -0.1025 11 6 9.4879 3.0196 -1.2640 12 6 10.2312 4.3421 -1.0623 13 6 9.2275 5.4973 -1.0542 14 6 8.2491 5.3102 0.1097 15 1 8.7840 5.3915 1.0560 16 6 7.1604 6.3830 0.0422 17 1 6.3596 6.1698 0.7502 18 6 7.7554 7.7953 0.2842 19 6 6.7702 8.7183 -0.4636 20 7 6.0799 7.8969 -1.4689 21 6 5.1098 8.3368 -2.3293 22 1 4.6624 7.6518 -3.0344 23 6 4.7012 9.6629 -2.2953 24 7 5.2461 10.4976 -1.4357 25 14 3.3772 10.2628 -3.4686 26 1 2.0435 10.0948 -2.8375 27 1 3.6019 11.6981 -3.7764 28 1 3.4337 9.4724 -4.7245 29 6 6.6062 6.5216 -1.3978 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8575 0.6435 -0.8891 36 1 3.8568 0.6438 0.8909 37 1 3.8357 3.1230 0.8912 38 1 3.8366 3.1234 -0.8887 39 1 6.0053 1.9206 -0.8872 40 1 6.0039 1.9205 0.8928 41 1 9.0710 2.6805 0.8254 42 1 7.9107 1.9153 -0.2907 43 1 10.2056 2.1997 -1.2931 44 1 8.9344 3.0528 -2.2024 45 1 10.7645 4.3177 -0.1120 46 1 10.9436 4.4857 -1.8747 47 1 8.6764 5.5071 -1.9946 48 1 9.7597 6.4409 -0.9339 49 1 8.7551 7.8711 -0.1436 50 1 7.7714 8.0298 1.3485 51 1 6.0456 9.1326 0.2375 52 1 7.3163 9.5251 -0.9522 53 1 4.9604 11.4242 -1.4116 54 1 5.8066 5.8004 -1.5676 55 1 7.4033 6.3821 -2.1279 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754537637.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:08 Heat of formation + Delta-G solvation = -63.694085 kcal Electronic energy + Delta-G solvation = -31446.506771 eV Core-core repulsion = 27483.927103 eV Total energy + Delta-G solvation = -3962.579668 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.82955 -39.14916 -38.79000 -38.12310 -35.79420 -34.81166 -33.74645 -32.61544 -30.90541 -30.54086 -28.65074 -27.53421 -26.81500 -25.69572 -24.92822 -23.93283 -22.24852 -22.14356 -21.65199 -20.83444 -19.45850 -18.89676 -17.50010 -17.34837 -17.22512 -16.91142 -16.70734 -16.59790 -16.38089 -15.86791 -15.66495 -15.50610 -15.12030 -14.75786 -14.61845 -14.38794 -14.11129 -13.95781 -13.81557 -13.65301 -13.31874 -13.29895 -13.02837 -12.82672 -12.70188 -12.59279 -12.41632 -12.30256 -12.26782 -12.03738 -11.96989 -11.85483 -11.84982 -11.63740 -11.59158 -11.40314 -11.38857 -11.25499 -11.14736 -10.70108 -10.64223 -9.81927 -9.32160 -8.76376 -7.83790 -5.17082 1.39143 1.43328 1.51706 1.82876 2.12739 2.48909 2.81056 3.32270 3.56716 3.78987 3.90338 3.97149 3.98554 3.99418 4.04155 4.10674 4.24135 4.31309 4.33249 4.34669 4.38618 4.42300 4.43433 4.51129 4.54031 4.59511 4.71988 4.74489 4.78238 4.81434 4.85177 4.85752 4.89148 4.93506 5.00268 5.02035 5.07920 5.17357 5.20893 5.29264 5.30216 5.32793 5.33638 5.41772 5.42885 5.56505 5.65802 5.70443 5.75161 5.93055 6.19308 6.22286 6.64937 7.12416 7.47711 7.82806 8.49318 9.27119 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007027 B = 0.003905 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3983.709234 B = 7168.537044 C =10480.260741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.055 3.945 4 C -0.104 4.104 5 C -0.098 4.098 6 C -0.125 4.125 7 C 0.486 3.514 8 O -0.554 6.554 9 N -0.610 5.610 10 C 0.103 3.897 11 C -0.133 4.133 12 C -0.113 4.113 13 C -0.138 4.138 14 C 0.167 3.833 15 H 0.087 0.913 16 C -0.082 4.082 17 H 0.089 0.911 18 C -0.136 4.136 19 C 0.191 3.809 20 N -0.627 5.627 21 C -0.237 4.237 22 H 0.071 0.929 23 C -0.072 4.072 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.269 1.269 29 C 0.150 3.850 30 H 0.044 0.956 31 H 0.101 0.899 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.045 0.955 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.052 0.948 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.051 0.949 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.072 0.928 51 H -0.002 1.002 52 H 0.002 0.998 53 H 0.245 0.755 54 H 0.038 0.962 55 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.678 -25.851 5.663 27.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C -0.022 4.022 4 C -0.142 4.142 5 C -0.137 4.137 6 C -0.165 4.165 7 C 0.276 3.724 8 O -0.434 6.434 9 N -0.343 5.343 10 C -0.018 4.018 11 C -0.171 4.171 12 C -0.151 4.151 13 C -0.176 4.176 14 C 0.064 3.936 15 H 0.105 0.895 16 C -0.101 4.101 17 H 0.107 0.893 18 C -0.175 4.175 19 C 0.065 3.935 20 N -0.353 5.353 21 C -0.366 4.366 22 H 0.089 0.911 23 C -0.264 4.264 24 N -0.604 5.604 25 Si 0.807 3.193 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.194 1.194 29 C 0.026 3.974 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.070 0.930 48 H 0.086 0.914 49 H 0.092 0.908 50 H 0.090 0.910 51 H 0.017 0.983 52 H 0.020 0.980 53 H 0.055 0.945 54 H 0.056 0.944 55 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 6.319 -25.351 5.602 26.721 hybrid contribution -1.279 1.663 -0.747 2.227 sum 5.040 -23.688 4.855 24.700 Atomic orbital electron populations 1.22921 0.79827 1.03873 1.00564 1.87799 1.21201 1.28609 1.95569 1.22625 0.95048 0.84240 1.00282 1.21406 0.92167 0.96503 1.04108 1.21148 0.94239 0.96257 1.02013 1.21682 0.95324 0.93129 1.06317 1.21445 0.82267 0.92534 0.76129 1.90828 1.62491 1.40653 1.49406 1.48238 1.05503 1.07774 1.72792 1.22056 0.92843 0.87180 0.99709 1.21928 0.98730 0.98304 0.98100 1.21510 0.96984 0.93634 1.02970 1.22125 0.97301 0.99952 0.98244 1.21045 0.92597 0.81221 0.98777 0.89490 1.22718 0.96727 0.92436 0.98190 0.89329 1.22956 0.98541 0.96172 0.99842 1.20791 0.91712 0.91464 0.89493 1.44811 1.43390 1.06757 1.40316 1.19411 1.12136 0.93904 1.11156 0.91087 1.25671 1.02793 0.96340 1.01642 1.70222 1.46380 1.03893 1.39905 0.85061 0.78542 0.77147 0.78521 1.21399 1.21523 1.19409 1.22077 0.95204 0.85301 0.94811 0.93768 0.88064 0.93500 0.93266 0.93760 0.90325 0.89808 0.92720 0.93571 0.86882 0.86080 0.89335 0.87359 0.87906 0.92959 0.90317 0.91322 0.93002 0.91365 0.90819 0.90957 0.98344 0.97984 0.94548 0.94358 0.96889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.61 16 2 O -0.41 -8.57 10.70 -148.98 -1.59 -10.16 16 3 C 0.05 1.09 5.94 71.98 0.43 1.51 16 4 C -0.10 -1.78 5.58 30.59 0.17 -1.61 16 5 C -0.10 -2.13 4.50 30.59 0.14 -1.99 16 6 C -0.13 -2.18 4.10 29.85 0.12 -2.06 16 7 C 0.49 13.32 7.33 87.66 0.64 13.96 16 8 O -0.55 -21.83 9.18 -3.04 -0.03 -21.86 16 9 N -0.61 -13.90 2.97 -795.02 -2.36 -16.26 16 10 C 0.10 1.29 6.33 86.36 0.55 1.83 16 11 C -0.13 -1.69 6.08 30.67 0.19 -1.50 16 12 C -0.11 -1.85 5.88 30.62 0.18 -1.67 16 13 C -0.14 -3.51 4.69 30.67 0.14 -3.37 16 14 C 0.17 4.59 2.77 44.97 0.12 4.71 16 15 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 16 C -0.08 -3.21 2.11 -9.40 -0.02 -3.23 16 17 H 0.09 4.00 5.71 -23.05 -0.13 3.87 16 18 C -0.14 -5.65 6.33 31.78 0.20 -5.45 16 19 C 0.19 10.70 5.37 86.73 0.47 11.17 16 20 N -0.63 -36.92 3.39 -691.97 -2.35 -39.27 16 21 C -0.24 -14.96 10.28 84.03 0.86 -14.10 16 22 H 0.07 4.37 7.83 -2.91 -0.02 4.35 16 23 C -0.07 -4.53 5.49 84.86 0.47 -4.06 16 24 N -0.95 -62.50 10.31 21.65 0.22 -62.28 16 25 Si 0.98 49.80 29.55 68.60 2.03 51.82 16 26 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 27 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 28 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 29 C 0.15 7.21 5.74 86.86 0.50 7.70 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.04 0.92 8.14 -2.38 -0.02 0.91 16 35 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 1.21 8.14 -2.38 -0.02 1.20 16 37 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 38 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 39 H 0.11 1.46 7.49 -2.39 -0.02 1.44 16 40 H 0.12 1.37 8.11 -2.39 -0.02 1.35 16 41 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.11 0.83 5.96 -2.39 -0.01 0.81 16 43 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.05 1.63 5.62 -2.39 -0.01 1.62 16 48 H 0.07 1.81 6.66 -2.39 -0.02 1.79 16 49 H 0.07 2.72 6.37 -2.39 -0.02 2.71 16 50 H 0.07 2.70 8.14 -2.39 -0.02 2.69 16 51 H 0.00 -0.11 7.38 -2.39 -0.02 -0.13 16 52 H 0.00 0.12 7.50 -2.39 -0.02 0.10 16 53 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 54 H 0.04 1.98 5.75 -2.38 -0.01 1.97 16 55 H 0.01 0.64 5.23 -2.39 -0.01 0.63 16 Total: -1.00 -83.66 405.08 3.05 -80.61 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.73 Total: 13.92 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 6.41 Total: 3.47 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -4.49 Total: -117.81 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.62 Total: -32.02 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.03 Total: 51.82 kcal Total: -83.66 3.05 -80.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754537637.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.912 kcal (2) G-P(sol) polarization free energy of solvation -83.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds