Wall clock time and date at job start Tue Mar 31 2020 22:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00207 * 2 1 4 4 C 1.52997 * 109.47015 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47138 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47362 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47103 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00319 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99823 * 180.02562 * 7 6 5 10 10 C 1.46922 * 120.62823 * 357.92231 * 9 7 6 11 11 C 1.53191 * 108.77314 * 233.62748 * 10 9 7 12 12 C 1.53031 * 109.34428 * 305.35380 * 11 10 9 13 13 C 1.53107 * 109.50769 * 61.34343 * 12 11 10 14 14 C 1.46925 * 120.62840 * 177.94612 * 9 7 6 15 15 H 1.09004 * 109.58521 * 246.15740 * 14 9 7 16 16 C 1.52995 * 109.58799 * 6.43660 * 14 9 7 17 17 H 1.08998 * 110.88816 * 305.18122 * 16 14 9 18 18 C 1.55160 * 111.00352 * 181.30134 * 16 14 9 19 19 C 1.54371 * 102.91979 * 206.45320 * 18 16 14 20 20 N 1.47020 * 107.28853 * 22.14317 * 19 18 16 21 21 C 1.36939 * 125.64836 * 181.05894 * 20 19 18 22 22 H 1.07998 * 120.00112 * 180.02562 * 21 20 19 23 23 C 1.38811 * 119.99966 * 0.03098 * 21 20 19 24 24 N 1.31619 * 120.00066 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00034 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.46855 * 90.00189 * 25 23 21 27 27 H 1.48502 * 109.47051 * 210.00553 * 25 23 21 28 28 H 1.48504 * 109.46858 * 330.00288 * 25 23 21 29 29 C 1.47422 * 108.70405 * 1.08545 * 20 19 18 30 30 H 1.08999 * 109.47639 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47435 * 300.00681 * 1 2 3 32 32 H 1.09005 * 109.46737 * 60.00505 * 1 2 3 33 33 H 1.09002 * 109.47016 * 59.99701 * 3 2 1 34 34 H 1.08993 * 109.46827 * 299.99730 * 3 2 1 35 35 H 1.08996 * 109.47433 * 59.99373 * 4 3 2 36 36 H 1.09006 * 109.46987 * 299.99678 * 4 3 2 37 37 H 1.08996 * 109.47730 * 59.99236 * 5 4 3 38 38 H 1.09006 * 109.46658 * 299.99561 * 5 4 3 39 39 H 1.09006 * 109.46632 * 59.99579 * 6 5 4 40 40 H 1.08990 * 109.46920 * 299.99873 * 6 5 4 41 41 H 1.08998 * 109.58732 * 113.84718 * 10 9 7 42 42 H 1.08993 * 109.58808 * 353.41693 * 10 9 7 43 43 H 1.09009 * 109.49893 * 65.32131 * 11 10 9 44 44 H 1.09003 * 109.50026 * 185.38138 * 11 10 9 45 45 H 1.09001 * 109.46653 * 181.40194 * 12 11 10 46 46 H 1.09003 * 109.45989 * 301.36003 * 12 11 10 47 47 H 1.08996 * 109.49557 * 178.70295 * 13 12 11 48 48 H 1.09005 * 109.48345 * 58.61238 * 13 12 11 49 49 H 1.08999 * 110.72420 * 324.78744 * 18 16 14 50 50 H 1.08999 * 110.72168 * 88.06533 * 18 16 14 51 51 H 1.09002 * 109.85027 * 262.73013 * 19 18 16 52 52 H 1.09006 * 109.89943 * 141.57382 * 19 18 16 53 53 H 0.96998 * 120.00155 * 180.02562 * 24 23 21 54 54 H 1.09002 * 110.36713 * 217.03449 * 29 20 19 55 55 H 1.09003 * 110.45898 * 94.76566 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5822 0.0013 6 6 5.6831 2.4614 0.0026 7 6 6.2960 3.8380 0.0026 8 8 5.5832 4.8193 0.0012 9 7 7.6365 3.9789 0.0031 10 6 8.5129 2.8006 0.0495 11 6 9.4924 2.9604 1.2164 12 6 10.2357 4.2906 1.0758 13 6 9.2314 5.4452 1.1258 14 6 8.2489 5.3136 -0.0422 15 1 8.7825 5.4390 -0.9844 16 6 7.1601 6.3819 0.0767 17 1 6.3940 6.2424 -0.6860 18 6 7.7686 7.8071 -0.0003 19 6 6.7503 8.6600 0.7863 20 7 6.0112 7.7502 1.6736 21 6 5.0015 8.1113 2.5252 22 1 4.5196 7.3646 3.1388 23 6 4.5973 9.4372 2.5997 24 7 5.1842 10.3471 1.8515 25 14 3.2204 9.9300 3.7620 26 1 3.7934 10.2895 5.0839 27 1 2.4948 11.0986 3.2025 28 1 2.2783 8.7934 3.9234 29 6 6.5375 6.3847 1.4951 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8575 0.6434 -0.8890 36 1 3.8567 0.6438 0.8909 37 1 3.8358 3.1230 0.8911 38 1 3.8366 3.1233 -0.8888 39 1 6.0054 1.9204 -0.8872 40 1 6.0039 1.9204 0.8927 41 1 9.0680 2.7210 -0.8851 42 1 7.9117 1.9036 0.1973 43 1 8.9423 2.9488 2.1575 44 1 10.2098 2.1397 1.2044 45 1 10.9511 4.3950 1.8916 46 1 10.7657 4.3116 0.1235 47 1 9.7632 6.3935 1.0487 48 1 8.6837 5.4102 2.0675 49 1 8.7469 7.8352 0.4794 50 1 7.8356 8.1425 -1.0352 51 1 6.0611 9.1447 0.0948 52 1 7.2740 9.4108 1.3782 53 1 4.9020 11.2737 1.9038 54 1 5.7295 5.6557 1.5563 55 1 7.2994 6.1691 2.2443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754537638.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:12 Heat of formation + Delta-G solvation = -62.116448 kcal Electronic energy + Delta-G solvation = -31504.884031 eV Core-core repulsion = 27542.372774 eV Total energy + Delta-G solvation = -3962.511257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.85336 -39.13564 -38.77522 -38.13961 -35.79548 -34.81030 -33.73941 -32.61741 -30.91322 -30.50800 -28.67014 -27.52689 -26.81128 -25.69510 -24.92380 -23.93889 -22.26016 -22.11676 -21.67191 -20.83765 -19.44408 -18.90974 -17.50707 -17.35127 -17.22725 -16.91034 -16.72326 -16.62959 -16.34936 -15.86644 -15.65808 -15.50568 -15.10761 -14.77517 -14.63906 -14.39979 -14.12428 -13.96314 -13.81495 -13.65368 -13.30430 -13.28765 -13.01415 -12.82765 -12.70106 -12.58957 -12.42124 -12.29294 -12.26984 -12.05180 -11.95937 -11.84745 -11.83914 -11.63294 -11.59671 -11.39784 -11.34738 -11.24176 -11.14579 -10.69912 -10.64320 -9.83816 -9.34080 -8.74336 -7.83638 -5.16789 1.39169 1.43172 1.51798 1.83207 2.13123 2.49014 2.80973 3.32473 3.56731 3.80119 3.89930 3.96925 3.98527 3.99448 4.04218 4.11014 4.23859 4.31433 4.32973 4.34655 4.38210 4.42086 4.43531 4.51080 4.54030 4.59196 4.72201 4.74519 4.78164 4.80922 4.85007 4.85385 4.88990 4.93467 5.00066 5.01900 5.08698 5.17410 5.20919 5.29849 5.30245 5.32741 5.35610 5.41994 5.43300 5.56550 5.67140 5.70363 5.74971 5.90850 6.19188 6.22551 6.65100 7.12633 7.48022 7.83238 8.49666 9.27302 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.006909 B = 0.004026 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4051.468170 B = 6952.666359 C =10359.160087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.055 3.945 4 C -0.104 4.104 5 C -0.098 4.098 6 C -0.125 4.125 7 C 0.483 3.517 8 O -0.552 6.552 9 N -0.609 5.609 10 C 0.103 3.897 11 C -0.133 4.133 12 C -0.113 4.113 13 C -0.137 4.137 14 C 0.167 3.833 15 H 0.087 0.913 16 C -0.076 4.076 17 H 0.082 0.918 18 C -0.138 4.138 19 C 0.190 3.810 20 N -0.627 5.627 21 C -0.236 4.236 22 H 0.071 0.929 23 C -0.072 4.072 24 N -0.954 5.954 25 Si 0.979 3.021 26 H -0.282 1.282 27 H -0.291 1.291 28 H -0.272 1.272 29 C 0.147 3.853 30 H 0.101 0.899 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.052 0.948 44 H 0.102 0.898 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.050 0.950 49 H 0.074 0.926 50 H 0.072 0.928 51 H -0.001 1.001 52 H 0.002 0.998 53 H 0.245 0.755 54 H 0.048 0.952 55 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.896 -25.263 -6.870 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C -0.022 4.022 4 C -0.142 4.142 5 C -0.137 4.137 6 C -0.164 4.164 7 C 0.273 3.727 8 O -0.431 6.431 9 N -0.343 5.343 10 C -0.018 4.018 11 C -0.171 4.171 12 C -0.151 4.151 13 C -0.175 4.175 14 C 0.063 3.937 15 H 0.104 0.896 16 C -0.095 4.095 17 H 0.100 0.900 18 C -0.176 4.176 19 C 0.065 3.935 20 N -0.353 5.353 21 C -0.366 4.366 22 H 0.089 0.911 23 C -0.264 4.264 24 N -0.604 5.604 25 Si 0.807 3.193 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.197 1.197 29 C 0.023 3.977 30 H 0.119 0.881 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.106 0.894 42 H 0.126 0.874 43 H 0.071 0.929 44 H 0.121 0.879 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.017 0.983 52 H 0.020 0.980 53 H 0.054 0.946 54 H 0.066 0.934 55 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 6.522 -24.773 -6.815 26.508 hybrid contribution -1.279 1.613 0.825 2.218 sum 5.243 -23.160 -5.990 24.490 Atomic orbital electron populations 1.22919 0.79829 1.03876 1.00562 1.87800 1.21202 1.28604 1.95570 1.22624 0.95048 0.84240 1.00277 1.21405 0.92167 0.96503 1.04102 1.21149 0.94248 0.96258 1.01999 1.21670 0.95316 0.93155 1.06277 1.21418 0.82283 0.92520 0.76435 1.90833 1.62535 1.40687 1.49057 1.48230 1.05476 1.07382 1.73192 1.22051 0.92808 0.87195 0.99730 1.21928 0.98711 0.98275 0.98163 1.21517 0.96968 0.93569 1.03025 1.22119 0.97255 1.00092 0.98082 1.21034 0.92578 0.81214 0.98841 0.89567 1.22580 0.96148 0.92428 0.98368 0.89992 1.22987 0.98406 0.96376 0.99848 1.20806 0.91137 0.90852 0.90689 1.44819 1.39587 1.04501 1.46367 1.19409 1.09481 0.92969 1.14702 0.91089 1.25668 1.02774 0.95830 1.02164 1.70221 1.45308 1.00865 1.44022 0.85063 0.78705 0.77391 0.78129 1.20897 1.21715 1.19734 1.22221 0.95439 0.85961 0.94043 0.88053 0.93793 0.93483 0.93829 0.93206 0.89747 0.90389 0.93668 0.92645 0.86036 0.87004 0.89376 0.87361 0.92935 0.87925 0.91279 0.90316 0.91219 0.93145 0.90708 0.90931 0.98316 0.98023 0.94558 0.93409 0.97380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -8.66 10.70 -148.98 -1.59 -10.25 16 3 C 0.05 1.10 5.94 71.98 0.43 1.53 16 4 C -0.10 -1.81 5.58 30.59 0.17 -1.64 16 5 C -0.10 -2.16 4.50 30.59 0.14 -2.02 16 6 C -0.12 -2.21 4.06 29.85 0.12 -2.09 16 7 C 0.48 13.33 7.18 87.65 0.63 13.96 16 8 O -0.55 -21.77 9.07 -3.04 -0.03 -21.79 16 9 N -0.61 -13.97 2.96 -795.05 -2.35 -16.32 16 10 C 0.10 1.30 6.34 86.36 0.55 1.84 16 11 C -0.13 -1.69 6.08 30.67 0.19 -1.51 16 12 C -0.11 -1.83 5.89 30.64 0.18 -1.65 16 13 C -0.14 -3.48 4.73 30.69 0.15 -3.33 16 14 C 0.17 4.59 2.79 44.97 0.13 4.71 16 15 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 16 C -0.08 -2.99 2.12 -9.40 -0.02 -3.01 16 17 H 0.08 3.70 5.96 -6.37 -0.04 3.66 16 18 C -0.14 -5.69 6.33 31.80 0.20 -5.49 16 19 C 0.19 10.69 5.37 86.75 0.47 11.16 16 20 N -0.63 -36.92 3.39 -691.89 -2.35 -39.27 16 21 C -0.24 -14.93 10.28 84.03 0.86 -14.06 16 22 H 0.07 4.37 7.83 -2.91 -0.02 4.35 16 23 C -0.07 -4.52 5.49 84.86 0.47 -4.05 16 24 N -0.95 -62.50 10.31 21.65 0.22 -62.28 16 25 Si 0.98 49.78 29.55 68.60 2.03 51.81 16 26 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 28 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 29 C 0.15 7.06 5.66 86.86 0.49 7.56 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16 38 H 0.05 1.39 8.10 -2.38 -0.02 1.37 16 39 H 0.12 1.38 8.02 -2.38 -0.02 1.36 16 40 H 0.11 1.50 7.60 -2.39 -0.02 1.48 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.11 0.84 5.94 -2.39 -0.01 0.83 16 43 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.07 1.82 6.51 -2.39 -0.02 1.81 16 48 H 0.05 1.58 5.68 -2.38 -0.01 1.57 16 49 H 0.07 2.76 6.15 -2.39 -0.01 2.75 16 50 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 51 H 0.00 -0.09 7.38 -2.39 -0.02 -0.11 16 52 H 0.00 0.10 7.51 -2.38 -0.02 0.08 16 53 H 0.25 15.48 8.31 -92.71 -0.77 14.70 16 54 H 0.05 2.47 5.41 -7.44 -0.04 2.43 16 55 H 0.01 0.41 5.37 -2.39 -0.01 0.40 16 Total: -1.00 -83.56 404.51 3.11 -80.45 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.79 Total: 14.14 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 6.39 Total: 3.52 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -4.48 Total: -117.87 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -1.62 Total: -32.05 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.03 Total: 51.81 kcal Total: -83.56 3.11 -80.45 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754537638.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.335 kcal (2) G-P(sol) polarization free energy of solvation -83.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds