Wall clock time and date at job start Tue Mar 31 2020 22:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00119 * 2 1 4 4 C 1.53004 * 109.47187 * 179.97438 * 3 2 1 5 5 C 1.50701 * 112.85073 * 309.67137 * 4 3 2 6 6 O 1.21279 * 119.99981 * 230.33280 * 5 4 3 7 7 N 1.34782 * 119.99951 * 50.32988 * 5 4 3 8 8 C 1.46498 * 119.99771 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46851 * 179.97438 * 8 7 5 10 10 H 1.09001 * 109.46771 * 55.00462 * 9 8 7 11 11 C 1.53000 * 109.46787 * 175.00074 * 9 8 7 12 12 C 1.53004 * 109.46787 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47195 * 300.00235 * 12 11 9 14 14 H 1.09000 * 109.46927 * 300.00042 * 13 12 11 15 15 C 1.53004 * 109.47195 * 179.97438 * 13 12 11 16 16 N 1.46499 * 109.47198 * 174.99817 * 15 13 12 17 17 C 1.36939 * 119.99933 * 180.27608 * 16 15 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 15 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 15 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47173 * 60.00435 * 21 19 17 23 23 H 1.48497 * 109.47172 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47132 * 300.00314 * 21 19 17 25 25 C 1.53000 * 109.47445 * 60.00168 * 13 12 11 26 26 C 1.52995 * 109.47195 * 295.00309 * 9 8 7 27 27 C 1.53783 * 113.61288 * 80.86530 * 4 3 2 28 28 C 1.53955 * 87.01876 * 89.22814 * 27 4 3 29 29 C 1.53772 * 113.61484 * 178.47305 * 4 3 2 30 30 H 1.08994 * 109.46976 * 300.00114 * 1 2 3 31 31 H 1.09003 * 109.46952 * 59.99405 * 1 2 3 32 32 H 1.08992 * 109.47370 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46989 * 60.00060 * 3 2 1 34 34 H 1.08994 * 109.47286 * 300.00267 * 3 2 1 35 35 H 0.97000 * 119.99675 * 0.02562 * 7 5 4 36 36 H 1.09003 * 109.47038 * 60.00256 * 8 7 5 37 37 H 1.08992 * 109.47044 * 299.99992 * 8 7 5 38 38 H 1.09000 * 109.47161 * 60.00064 * 11 9 8 39 39 H 1.09003 * 109.47289 * 299.99914 * 11 9 8 40 40 H 1.08998 * 109.47252 * 179.97438 * 12 11 9 41 41 H 1.09001 * 109.46771 * 60.00388 * 12 11 9 42 42 H 1.09009 * 109.46730 * 54.99604 * 15 13 12 43 43 H 1.08998 * 109.46846 * 295.00148 * 15 13 12 44 44 H 0.97001 * 119.99790 * 359.97438 * 16 15 13 45 45 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.47149 * 59.99462 * 25 13 12 47 47 H 1.09003 * 109.47289 * 180.02562 * 25 13 12 48 48 H 1.09000 * 109.46927 * 300.00042 * 26 9 8 49 49 H 1.08998 * 109.47557 * 59.99530 * 26 9 8 50 50 H 1.09000 * 113.61503 * 203.74935 * 27 4 3 51 51 H 1.09000 * 113.61478 * 334.65505 * 27 4 3 52 52 H 1.09001 * 113.54038 * 270.81431 * 28 27 4 53 53 H 1.09004 * 113.74220 * 139.94074 * 28 27 4 54 54 H 1.08997 * 113.61888 * 25.34663 * 29 4 3 55 55 H 1.09003 * 113.61708 * 156.17161 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0485 0.2548 1.0700 6 8 4.9329 0.6180 1.8161 7 7 3.5243 -0.9804 1.1971 8 6 4.0233 -1.8844 2.2363 9 6 3.2651 -3.2114 2.1649 10 1 3.3439 -3.6211 1.1579 11 6 3.8692 -4.1984 3.1657 12 6 3.1106 -5.5252 3.0948 13 6 1.6380 -5.2896 3.4363 14 1 1.5596 -4.8797 4.4432 15 6 0.8792 -6.6163 3.3647 16 7 -0.5026 -6.4131 3.8067 17 6 -1.3752 -7.4681 3.8333 18 1 -1.0458 -8.4491 3.5242 19 6 -2.6829 -7.2768 4.2577 20 7 -3.0843 -6.0811 4.6341 21 14 -3.8733 -8.7158 4.2933 22 1 -3.3515 -9.7676 5.2025 23 1 -5.1968 -8.2515 4.7810 24 1 -4.0182 -9.2724 2.9241 25 6 1.0338 -4.3026 2.4354 26 6 1.7923 -2.9763 2.5060 27 6 4.1325 0.9127 -1.3903 28 6 4.2023 2.4401 -1.5703 29 6 4.2608 2.5400 -0.0368 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 2.8171 -1.2709 0.6001 36 1 3.8707 -1.4314 3.2159 37 1 5.0870 -2.0644 2.0810 38 1 3.7905 -3.7887 4.1727 39 1 4.9185 -4.3659 2.9227 40 1 3.5412 -6.2286 3.8075 41 1 3.1890 -5.9351 2.0878 42 1 1.3640 -7.3474 4.0118 43 1 0.8822 -6.9816 2.3377 44 1 -0.7983 -5.5320 4.0847 45 1 -3.9983 -5.9473 4.9302 46 1 1.1123 -4.7125 1.4285 47 1 -0.0152 -4.1344 2.6790 48 1 1.7136 -2.5666 3.5130 49 1 1.3619 -2.2731 1.7930 50 1 5.1100 0.4315 -1.3594 51 1 3.4398 0.4228 -2.0745 52 1 3.2980 2.8694 -2.0017 53 1 5.1112 2.7826 -2.0652 54 1 3.6717 3.3620 0.3698 55 1 5.2731 2.5049 0.3660 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754834228.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:09 Heat of formation + Delta-G solvation = -100.730285 kcal Electronic energy + Delta-G solvation = -30662.105430 eV Core-core repulsion = 26697.919752 eV Total energy + Delta-G solvation = -3964.185679 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.74024 -40.13643 -38.97515 -38.06713 -36.85635 -35.48385 -33.60507 -31.74854 -31.59263 -30.04028 -28.11950 -27.13471 -26.60454 -25.88893 -24.96343 -24.04534 -23.27326 -21.78333 -21.52808 -20.70680 -19.78825 -19.13582 -18.38826 -17.39240 -17.04498 -16.67947 -16.53376 -16.50063 -16.30131 -15.81683 -15.53714 -15.35694 -15.25910 -15.17153 -14.92628 -14.57325 -14.49215 -13.98035 -13.68723 -13.51080 -13.37164 -13.17910 -13.07345 -13.00317 -12.84859 -12.76504 -12.54987 -12.44923 -12.21566 -12.14849 -12.12220 -11.94692 -11.86380 -11.75767 -11.42823 -11.32397 -11.31752 -11.04743 -10.92016 -10.81731 -10.73535 -10.48329 -9.96815 -8.97611 -7.94410 -5.22684 1.46457 1.49790 1.55918 1.61747 2.28804 2.56489 2.63291 3.38499 3.48710 3.57688 3.65470 3.77801 3.82617 3.83561 3.92322 3.94839 4.00248 4.23560 4.34497 4.36729 4.42802 4.45048 4.54952 4.56797 4.57464 4.60975 4.63361 4.64696 4.67982 4.77421 4.78898 4.84602 4.87942 4.93719 4.97538 5.02417 5.07273 5.10071 5.10648 5.16263 5.21874 5.24857 5.30871 5.34285 5.43670 5.45228 5.47824 5.58413 5.61252 5.68033 6.12002 6.28251 6.69597 7.34139 7.34287 8.11937 8.35501 9.29107 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016683 B = 0.002276 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.928304 B =12297.067354 C =13514.518185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.407 6.407 3 C 0.089 3.911 4 C -0.113 4.113 5 C 0.522 3.478 6 O -0.592 6.592 7 N -0.706 5.706 8 C 0.125 3.875 9 C -0.084 4.084 10 H 0.085 0.915 11 C -0.104 4.104 12 C -0.102 4.102 13 C -0.085 4.085 14 H 0.053 0.947 15 C 0.154 3.846 16 N -0.744 5.744 17 C -0.246 4.246 18 H 0.073 0.927 19 C -0.077 4.077 20 N -0.970 5.970 21 Si 0.974 3.026 22 H -0.279 1.279 23 H -0.294 1.294 24 H -0.277 1.277 25 C -0.100 4.100 26 C -0.103 4.103 27 C -0.115 4.115 28 C -0.128 4.128 29 C -0.113 4.113 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.416 0.584 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.014 0.986 43 H 0.019 0.981 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.061 0.939 47 H 0.038 0.962 48 H 0.050 0.950 49 H 0.069 0.931 50 H 0.077 0.923 51 H 0.090 0.910 52 H 0.103 0.897 53 H 0.083 0.917 54 H 0.082 0.918 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.417 17.854 -15.109 28.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.327 6.327 3 C 0.012 3.988 4 C -0.117 4.117 5 C 0.309 3.691 6 O -0.474 6.474 7 N -0.361 5.361 8 C 0.001 3.999 9 C -0.102 4.102 10 H 0.104 0.896 11 C -0.142 4.142 12 C -0.140 4.140 13 C -0.104 4.104 14 H 0.072 0.928 15 C 0.028 3.972 16 N -0.387 5.387 17 C -0.378 4.378 18 H 0.091 0.909 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.803 3.197 22 H -0.205 1.205 23 H -0.221 1.221 24 H -0.203 1.203 25 C -0.138 4.138 26 C -0.141 4.141 27 C -0.153 4.153 28 C -0.165 4.165 29 C -0.151 4.151 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.258 0.742 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.032 0.968 43 H 0.037 0.963 44 H 0.206 0.794 45 H 0.060 0.940 46 H 0.080 0.920 47 H 0.057 0.943 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.095 0.905 51 H 0.108 0.892 52 H 0.121 0.879 53 H 0.101 0.899 54 H 0.101 0.899 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.076 17.723 -14.616 28.039 hybrid contribution -1.612 -0.521 0.561 1.784 sum 14.465 17.202 -14.056 26.509 Atomic orbital electron populations 1.22870 0.79027 1.03679 1.00988 1.87548 1.21410 1.28111 1.95599 1.22292 0.89092 0.85130 1.02277 1.22337 0.95752 0.97617 0.95947 1.20799 0.81301 0.82619 0.84362 1.90645 1.33224 1.76791 1.46731 1.46303 1.40201 1.13985 1.35607 1.21360 0.98010 0.89517 0.90978 1.21287 0.94306 0.93724 1.00925 0.89646 1.21460 0.99644 0.94182 0.98953 1.21440 0.92730 0.97549 1.02250 1.21230 0.95645 0.94579 0.98950 0.92827 1.20878 0.84246 0.95938 0.96132 1.42602 1.07723 1.08983 1.79367 1.19622 0.92026 0.90704 1.35478 0.90876 1.25573 0.99243 0.99324 1.02758 1.69817 1.17457 1.22543 1.52267 0.85203 0.77875 0.78657 0.77981 1.20500 1.22061 1.20296 1.21382 0.98333 0.95167 0.98893 1.21501 0.94699 0.96533 1.01321 1.22917 1.01087 0.98469 0.92840 1.22900 1.03991 0.94769 0.94806 1.22830 1.00651 0.93663 0.97912 0.93921 0.92026 0.89297 0.92832 0.89276 0.74210 0.93101 0.91724 0.92135 0.89964 0.91454 0.91116 0.96799 0.96307 0.79395 0.94015 0.91985 0.94291 0.93132 0.91282 0.90477 0.89188 0.87902 0.89880 0.89901 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -6.46 7.66 -148.98 -1.14 -7.60 16 3 C 0.09 1.20 5.26 71.98 0.38 1.58 16 4 C -0.11 -1.86 1.11 -52.40 -0.06 -1.92 16 5 C 0.52 12.56 6.91 87.66 0.61 13.17 16 6 O -0.59 -18.78 15.91 -3.03 -0.05 -18.83 16 7 N -0.71 -15.35 4.95 -463.06 -2.29 -17.64 16 8 C 0.13 2.77 5.06 86.38 0.44 3.21 16 9 C -0.08 -1.72 2.23 -10.79 -0.02 -1.75 16 10 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 11 C -0.10 -2.14 5.20 30.60 0.16 -1.98 16 12 C -0.10 -2.46 5.20 30.59 0.16 -2.30 16 13 C -0.09 -2.74 2.23 -10.79 -0.02 -2.76 16 14 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 15 C 0.15 6.32 5.65 86.38 0.49 6.81 16 16 N -0.74 -38.80 5.33 -343.44 -1.83 -40.64 16 17 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 18 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 19 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 20 N -0.97 -60.09 13.06 21.65 0.28 -59.80 16 21 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 C -0.10 -3.07 5.07 30.58 0.16 -2.91 16 26 C -0.10 -2.54 5.07 30.58 0.16 -2.39 16 27 C -0.12 -1.46 7.21 31.18 0.22 -1.23 16 28 C -0.13 -1.18 7.74 31.18 0.24 -0.94 16 29 C -0.11 -1.63 6.99 31.12 0.22 -1.41 16 30 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 0.76 7.34 -2.39 -0.02 0.74 16 35 H 0.42 8.22 5.02 -92.71 -0.47 7.76 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.37 20.68 6.85 -92.71 -0.64 20.04 16 45 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 46 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.04 1.46 7.18 -2.39 -0.02 1.44 16 48 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.07 1.60 7.18 -2.39 -0.02 1.59 16 50 H 0.08 1.12 8.09 -2.39 -0.02 1.11 16 51 H 0.09 0.96 8.10 -2.39 -0.02 0.94 16 52 H 0.10 0.58 7.64 -2.39 -0.02 0.56 16 53 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 54 H 0.08 1.01 8.10 -2.39 -0.02 0.99 16 55 H 0.08 1.51 7.45 -2.39 -0.02 1.49 16 Total: -1.00 -71.20 422.72 2.42 -68.78 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: -0.25 Total: 37.54 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 5.67 Total: -10.45 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -3.84 Total: -118.08 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -1.19 Total: -26.43 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -71.20 2.42 -68.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754834228.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.950 kcal (2) G-P(sol) polarization free energy of solvation -71.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds