Wall clock time and date at job start Tue Mar 31 2020 22:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36933 * 120.00231 * 2 1 4 4 H 1.07998 * 120.00662 * 204.29176 * 3 2 1 5 5 C 1.38814 * 120.00035 * 24.29646 * 3 2 1 6 6 N 1.31627 * 119.99696 * 10.70807 * 5 3 2 7 7 Si 1.86799 * 120.00477 * 190.70884 * 5 3 2 8 8 H 1.48500 * 109.46635 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47202 * 119.99760 * 7 5 3 10 10 H 1.48493 * 109.47114 * 240.00029 * 7 5 3 11 11 C 1.46507 * 120.00118 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46862 * 95.41911 * 11 2 1 13 13 H 1.09000 * 110.00053 * 55.29733 * 12 11 2 14 14 C 1.54328 * 109.88585 * 294.19766 * 12 11 2 15 15 C 1.55152 * 102.94468 * 218.39000 * 14 12 11 16 16 C 1.54916 * 101.57752 * 35.50469 * 15 14 12 17 17 N 1.47027 * 109.88022 * 176.39017 * 12 11 2 18 18 C 1.34769 * 125.65163 * 298.39917 * 17 12 11 19 19 O 1.21286 * 119.99553 * 4.85616 * 18 17 12 20 20 C 1.50701 * 120.00432 * 184.86310 * 18 17 12 21 21 C 1.52994 * 109.47289 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47357 * 179.97438 * 21 20 18 23 23 C 1.52994 * 109.47357 * 179.97438 * 22 21 20 24 24 C 1.53175 * 109.54801 * 294.55952 * 23 22 21 25 25 C 1.53093 * 109.16709 * 183.15517 * 24 23 22 26 26 O 1.42899 * 109.41430 * 57.60301 * 25 24 23 27 27 C 1.42908 * 114.10386 * 298.84654 * 26 25 24 28 28 C 1.53092 * 109.41125 * 61.15694 * 27 26 25 29 29 H 1.09010 * 109.47022 * 266.59404 * 1 2 3 30 30 H 1.09004 * 109.47268 * 26.59127 * 1 2 3 31 31 H 1.09003 * 109.47471 * 146.59338 * 1 2 3 32 32 H 0.96999 * 119.99863 * 180.02562 * 6 5 3 33 33 H 1.08995 * 109.46753 * 335.42356 * 11 2 1 34 34 H 1.08994 * 109.46998 * 215.42105 * 11 2 1 35 35 H 1.09000 * 110.71837 * 336.75930 * 14 12 11 36 36 H 1.08998 * 110.71451 * 100.02876 * 14 12 11 37 37 H 1.09003 * 111.00371 * 153.57340 * 15 14 12 38 38 H 1.08994 * 111.01054 * 277.43137 * 15 14 12 39 39 H 1.09008 * 110.36024 * 204.14786 * 16 15 14 40 40 H 1.08998 * 110.46275 * 81.87821 * 16 15 14 41 41 H 1.08997 * 109.47050 * 299.99690 * 20 18 17 42 42 H 1.08998 * 109.46777 * 59.99651 * 20 18 17 43 43 H 1.09002 * 109.47684 * 300.00234 * 21 20 18 44 44 H 1.09004 * 109.46785 * 59.99977 * 21 20 18 45 45 H 1.09002 * 109.47115 * 300.00828 * 22 21 20 46 46 H 1.09007 * 109.46924 * 59.99838 * 22 21 20 47 47 H 1.09001 * 109.54248 * 54.83017 * 23 22 21 48 48 H 1.09004 * 109.51713 * 303.05593 * 24 23 22 49 49 H 1.09001 * 109.52141 * 63.24261 * 24 23 22 50 50 H 1.09006 * 109.47273 * 297.62569 * 25 24 23 51 51 H 1.08996 * 109.49020 * 177.59698 * 25 24 23 52 52 H 1.09000 * 109.47429 * 301.17833 * 27 26 25 53 53 H 1.08996 * 109.48068 * 181.14120 * 27 26 25 54 54 H 1.09000 * 109.52149 * 182.49012 * 28 27 26 55 55 H 1.08996 * 109.52102 * 62.30011 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1579 1.2273 -0.3847 5 6 1.5479 2.3348 0.4946 6 7 0.4109 2.2511 1.1526 7 14 2.3514 3.9997 0.2265 8 1 3.6127 3.8232 -0.5372 9 1 1.4290 4.8771 -0.5380 10 1 2.6510 4.6221 1.5410 11 6 2.1975 -1.2688 -0.0006 12 6 2.5705 -1.6416 -1.4368 13 1 3.1283 -0.8280 -1.9003 14 6 1.2929 -1.9333 -2.2520 15 6 1.7159 -3.1296 -3.1448 16 6 2.6575 -3.9098 -2.1936 17 7 3.3803 -2.8687 -1.4405 18 6 4.5836 -3.0176 -0.8522 19 8 5.0460 -2.1189 -0.1816 20 6 5.3548 -4.3004 -1.0277 21 6 6.6771 -4.2092 -0.2635 22 6 7.4597 -5.5118 -0.4411 23 6 8.7823 -5.4204 0.3226 24 6 9.6653 -4.3400 -0.3092 25 6 11.0158 -4.3099 0.4111 26 8 11.6252 -5.6000 0.3321 27 6 10.8666 -6.6425 0.9486 28 6 9.5101 -6.7662 0.2497 29 1 -0.3633 -0.0611 1.0259 30 1 -0.3634 0.9190 -0.4600 31 1 -0.3634 -0.8579 -0.5658 32 1 -0.0098 3.0540 1.4979 33 1 1.5698 -2.0508 0.4265 34 1 3.1044 -1.1649 0.5951 35 1 0.4712 -2.2150 -1.5936 36 1 1.0210 -1.0730 -2.8635 37 1 0.8526 -3.7344 -3.4225 38 1 2.2516 -2.7865 -4.0299 39 1 3.3571 -4.5179 -2.7672 40 1 2.0793 -4.5367 -1.5148 41 1 4.7677 -5.1331 -0.6405 42 1 5.5578 -4.4603 -2.0866 43 1 7.2641 -3.3765 -0.6510 44 1 6.4743 -4.0490 0.7955 45 1 6.8725 -6.3442 -0.0533 46 1 7.6624 -5.6724 -1.5000 47 1 8.5849 -5.1685 1.3646 48 1 9.8201 -4.5671 -1.3641 49 1 9.1789 -3.3693 -0.2122 50 1 10.8639 -4.0431 1.4570 51 1 11.6639 -3.5721 -0.0619 52 1 10.7128 -6.4061 2.0015 53 1 11.4072 -7.5850 0.8626 54 1 8.9128 -7.5307 0.7466 55 1 9.6618 -7.0423 -0.7938 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755195870.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:01 Heat of formation + Delta-G solvation = -101.711785 kcal Electronic energy + Delta-G solvation = -30243.546767 eV Core-core repulsion = 26279.318527 eV Total energy + Delta-G solvation = -3964.228240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.21296 -40.37578 -38.80009 -37.12402 -36.77145 -33.91355 -33.36984 -32.42085 -31.98388 -30.68485 -28.77327 -28.04300 -26.80945 -25.39706 -24.47772 -23.76325 -22.77185 -22.24744 -21.48956 -20.93417 -19.76489 -18.71657 -17.96022 -17.47008 -17.09956 -16.96352 -16.75871 -16.54125 -16.04423 -15.69539 -15.55451 -15.31360 -15.17224 -14.94810 -14.75915 -14.54208 -14.27294 -13.87679 -13.82474 -13.66115 -13.32099 -13.14045 -13.03568 -12.84380 -12.78212 -12.67121 -12.54527 -12.44059 -12.37386 -12.21525 -12.16943 -11.99681 -11.93697 -11.80703 -11.60803 -11.60118 -11.47237 -11.17259 -11.13570 -10.71995 -10.66201 -10.39643 -9.67009 -8.72642 -7.89273 -5.37360 1.39501 1.40740 1.52289 1.72909 2.07447 2.47595 2.97628 3.24478 3.50955 3.68087 3.71983 3.77365 3.82124 3.89221 4.00572 4.05456 4.09805 4.16663 4.23416 4.31649 4.36825 4.42363 4.51223 4.51665 4.53057 4.62594 4.69836 4.73151 4.77612 4.79545 4.84022 4.86321 4.91783 4.95678 5.02106 5.04590 5.07649 5.09964 5.13473 5.15976 5.18947 5.20197 5.30242 5.31271 5.43491 5.45468 5.53012 5.54681 5.59207 5.67390 6.26847 6.30282 6.70081 7.12474 7.29727 7.82872 8.25657 9.15021 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012607 B = 0.002323 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.524571 B =12049.893916 C =13708.710359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.612 5.612 3 C -0.257 4.257 4 H 0.051 0.949 5 C -0.051 4.051 6 N -0.937 5.937 7 Si 0.968 3.032 8 H -0.275 1.275 9 H -0.281 1.281 10 H -0.290 1.290 11 C 0.151 3.849 12 C 0.125 3.875 13 H 0.032 0.968 14 C -0.113 4.113 15 C -0.122 4.122 16 C 0.096 3.904 17 N -0.618 5.618 18 C 0.507 3.493 19 O -0.592 6.592 20 C -0.120 4.120 21 C -0.103 4.103 22 C -0.100 4.100 23 C -0.092 4.092 24 C -0.151 4.151 25 C 0.056 3.944 26 O -0.405 6.405 27 C 0.052 3.948 28 C -0.144 4.144 29 H -0.011 1.011 30 H 0.031 0.969 31 H 0.037 0.963 32 H 0.250 0.750 33 H 0.045 0.955 34 H 0.020 0.980 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.050 0.950 44 H 0.046 0.954 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.049 0.951 51 H 0.097 0.903 52 H 0.051 0.949 53 H 0.106 0.894 54 H 0.089 0.911 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.477 -24.865 -8.745 29.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.336 5.336 3 C -0.387 4.387 4 H 0.069 0.931 5 C -0.246 4.246 6 N -0.584 5.584 7 Si 0.796 3.204 8 H -0.200 1.200 9 H -0.207 1.207 10 H -0.217 1.217 11 C 0.024 3.976 12 C 0.018 3.982 13 H 0.050 0.950 14 C -0.151 4.151 15 C -0.159 4.159 16 C -0.025 4.025 17 N -0.352 5.352 18 C 0.298 3.702 19 O -0.473 6.473 20 C -0.159 4.159 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.111 4.111 24 C -0.189 4.189 25 C -0.020 4.020 26 O -0.325 6.325 27 C -0.024 4.024 28 C -0.182 4.182 29 H 0.007 0.993 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.096 0.904 39 H 0.127 0.873 40 H 0.101 0.899 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.086 0.914 50 H 0.068 0.932 51 H 0.115 0.885 52 H 0.069 0.931 53 H 0.124 0.876 54 H 0.107 0.893 55 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.865 -24.331 -8.380 28.770 hybrid contribution -0.049 1.926 0.647 2.032 sum 12.816 -22.405 -7.733 26.945 Atomic orbital electron populations 1.20618 0.82039 0.97496 0.96415 1.44002 1.02283 1.00988 1.86325 1.19346 0.98452 0.87271 1.33659 0.93076 1.25779 0.98673 1.01869 0.98300 1.70222 1.20064 1.27894 1.40259 0.85191 0.77955 0.80043 0.77203 1.19994 1.20688 1.21676 1.21007 0.94578 0.87303 0.94684 1.22065 0.92161 0.86299 0.97636 0.95017 1.22541 0.95150 0.99464 0.97921 1.22818 1.00249 0.95792 0.97077 1.22642 0.95528 0.90135 0.94197 1.48859 1.18352 1.14177 1.53788 1.21445 0.80205 0.90634 0.77915 1.90730 1.69580 1.45608 1.41349 1.21687 0.96316 0.93521 1.04389 1.21337 0.94543 0.98577 0.99653 1.21546 0.94567 0.96491 1.01146 1.21220 0.95005 0.95171 0.99694 1.22267 0.95972 0.99901 1.00772 1.22655 0.94525 0.84981 0.99856 1.87890 1.47544 1.17476 1.79579 1.22773 0.92615 0.91191 0.95870 1.22204 0.96348 0.97302 1.02297 0.99274 0.94992 0.94446 0.94046 0.93671 0.96202 0.90706 0.91551 0.86946 0.90408 0.87344 0.89860 0.86441 0.86410 0.93082 0.93530 0.90083 0.90605 0.91839 0.91016 0.91433 0.93240 0.88473 0.93091 0.87609 0.89252 0.90883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.08 8.69 127.77 1.11 10.19 16 2 N -0.61 -33.12 2.78 -726.93 -2.02 -35.14 16 3 C -0.26 -15.46 9.65 84.03 0.81 -14.65 16 4 H 0.05 3.18 7.85 -2.91 -0.02 3.16 16 5 C -0.05 -3.07 5.09 84.86 0.43 -2.64 16 6 N -0.94 -57.88 10.71 21.65 0.23 -57.65 16 7 Si 0.97 48.17 29.57 68.60 2.03 50.20 16 8 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 9 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 10 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 11 C 0.15 7.07 5.11 86.38 0.44 7.51 16 12 C 0.12 4.69 3.12 45.34 0.14 4.83 16 13 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 14 C -0.11 -3.26 5.62 31.78 0.18 -3.08 16 15 C -0.12 -2.16 7.09 31.99 0.23 -1.93 16 16 C 0.10 1.65 6.74 86.86 0.59 2.24 16 17 N -0.62 -18.11 3.06 -788.03 -2.42 -20.53 16 18 C 0.51 15.97 7.67 87.66 0.67 16.64 16 19 O -0.59 -25.91 14.79 -3.05 -0.05 -25.96 16 20 C -0.12 -2.20 4.63 29.85 0.14 -2.06 16 21 C -0.10 -2.08 4.27 30.59 0.13 -1.95 16 22 C -0.10 -1.31 4.69 30.59 0.14 -1.16 16 23 C -0.09 -1.35 2.27 -10.68 -0.02 -1.37 16 24 C -0.15 -2.53 5.10 30.68 0.16 -2.37 16 25 C 0.06 0.96 6.84 72.01 0.49 1.46 16 26 O -0.41 -7.71 10.77 -148.98 -1.60 -9.32 16 27 C 0.05 0.70 6.84 72.01 0.49 1.19 16 28 C -0.14 -1.67 5.42 30.69 0.17 -1.50 16 29 H -0.01 -0.62 7.79 -2.38 -0.02 -0.63 16 30 H 0.03 1.75 6.78 -2.38 -0.02 1.73 16 31 H 0.04 1.55 6.00 -2.39 -0.01 1.54 16 32 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.04 1.95 7.94 -2.39 -0.02 1.93 16 34 H 0.02 1.07 6.53 -2.39 -0.02 1.05 16 35 H 0.07 2.18 6.19 -2.39 -0.01 2.16 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.11 1.11 7.48 -2.38 -0.02 1.10 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.12 1.52 8.14 -2.39 -0.02 1.51 16 42 H 0.12 1.51 7.95 -2.39 -0.02 1.49 16 43 H 0.05 1.24 6.62 -2.39 -0.02 1.22 16 44 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.07 1.29 6.75 -2.39 -0.02 1.27 16 50 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 51 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 52 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 54 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 55 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -80.05 416.42 3.30 -76.75 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.83 Total: 10.30 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 6.30 Total: 11.35 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -4.20 Total: -113.31 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.65 Total: -35.28 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.20 kcal Total: -80.05 3.30 -76.75 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755195870.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.965 kcal (2) G-P(sol) polarization free energy of solvation -80.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds