Wall clock time and date at job start Tue Mar 31 2020 22:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36942 * 120.00443 * 2 1 4 4 H 1.07997 * 120.00068 * 154.14359 * 3 2 1 5 5 C 1.38808 * 119.99515 * 333.87039 * 3 2 1 6 6 N 1.31623 * 120.00150 * 352.66976 * 5 3 2 7 7 Si 1.86804 * 119.99926 * 172.66786 * 5 3 2 8 8 H 1.48504 * 109.46919 * 65.00044 * 7 5 3 9 9 H 1.48499 * 109.47193 * 184.99905 * 7 5 3 10 10 H 1.48497 * 109.47126 * 304.99960 * 7 5 3 11 11 C 1.46508 * 120.00068 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47099 * 263.94416 * 11 2 1 13 13 H 1.08997 * 109.87757 * 304.69878 * 12 11 2 14 14 C 1.54324 * 109.88066 * 65.71116 * 12 11 2 15 15 C 1.55156 * 102.94299 * 141.60741 * 14 12 11 16 16 C 1.54908 * 101.58034 * 324.49751 * 15 14 12 17 17 N 1.47014 * 109.88239 * 183.51680 * 12 11 2 18 18 C 1.34783 * 125.65100 * 61.62165 * 17 12 11 19 19 O 1.21281 * 119.99542 * 4.60811 * 18 17 12 20 20 C 1.50693 * 120.00502 * 184.60550 * 18 17 12 21 21 C 1.52995 * 109.47361 * 184.98900 * 20 18 17 22 22 C 1.53003 * 109.47553 * 184.83876 * 21 20 18 23 23 C 1.52995 * 109.47553 * 180.02562 * 22 21 20 24 24 C 1.53176 * 109.54154 * 294.82616 * 23 22 21 25 25 C 1.53104 * 109.15765 * 183.23814 * 24 23 22 26 26 O 1.42909 * 109.48656 * 57.47253 * 25 24 23 27 27 C 1.42901 * 114.09443 * 298.89202 * 26 25 24 28 28 C 1.53087 * 109.41917 * 61.15760 * 27 26 25 29 29 H 1.08994 * 109.47335 * 93.64558 * 1 2 3 30 30 H 1.09005 * 109.46738 * 213.64856 * 1 2 3 31 31 H 1.08999 * 109.46823 * 333.64495 * 1 2 3 32 32 H 0.97001 * 119.99899 * 180.02562 * 6 5 3 33 33 H 1.08994 * 109.46596 * 23.94773 * 11 2 1 34 34 H 1.08998 * 109.46658 * 143.94506 * 11 2 1 35 35 H 1.09001 * 110.72393 * 259.97490 * 14 12 11 36 36 H 1.09005 * 110.72465 * 23.06707 * 14 12 11 37 37 H 1.09004 * 111.00502 * 82.57316 * 15 14 12 38 38 H 1.09007 * 111.00384 * 206.42175 * 15 14 12 39 39 H 1.09007 * 110.36465 * 155.84959 * 16 15 14 40 40 H 1.08999 * 110.36934 * 278.16707 * 16 15 14 41 41 H 1.08999 * 109.47352 * 304.99060 * 20 18 17 42 42 H 1.09007 * 109.46890 * 64.98754 * 20 18 17 43 43 H 1.09001 * 109.47348 * 304.83910 * 21 20 18 44 44 H 1.08998 * 109.47016 * 64.84015 * 21 20 18 45 45 H 1.09001 * 109.46821 * 300.00356 * 22 21 20 46 46 H 1.09007 * 109.46988 * 59.99762 * 22 21 20 47 47 H 1.08998 * 109.54182 * 54.99842 * 23 22 21 48 48 H 1.09000 * 109.52620 * 303.05204 * 24 23 22 49 49 H 1.08997 * 109.52625 * 63.24451 * 24 23 22 50 50 H 1.09003 * 109.40863 * 297.49643 * 25 24 23 51 51 H 1.09004 * 109.49786 * 177.50586 * 25 24 23 52 52 H 1.08996 * 109.48312 * 301.16790 * 27 26 25 53 53 H 1.09008 * 109.48851 * 181.14502 * 27 26 25 54 54 H 1.08999 * 109.52719 * 182.48020 * 28 27 26 55 55 H 1.09008 * 109.57485 * 62.32401 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1487 1.2326 0.4079 5 6 1.5621 2.3266 -0.5294 6 7 0.4099 2.2412 -1.1600 7 14 2.4066 3.9828 -0.3470 8 1 3.6871 3.9711 -1.0991 9 1 1.5256 5.0497 -0.8864 10 1 2.6783 4.2444 1.0892 11 6 2.1975 -1.2688 -0.0006 12 6 2.5843 -1.6350 1.4337 13 1 3.1465 -0.8180 1.8860 14 6 1.3146 -1.9206 2.2630 15 6 1.7447 -3.1132 3.1575 16 6 2.6755 -3.8995 2.2010 17 7 3.3922 -2.8632 1.4356 18 6 4.5897 -3.0168 0.8362 19 8 5.1261 -2.0694 0.3017 20 6 5.2621 -4.3654 0.8304 21 6 6.6512 -4.2400 0.2016 22 6 7.2856 -5.6274 0.0854 23 6 8.6750 -5.5020 -0.5428 24 6 8.5423 -5.0002 -1.9840 25 6 9.9296 -4.9550 -2.6300 26 8 10.5232 -6.2539 -2.5759 27 6 10.7156 -6.7526 -1.2507 28 6 9.3598 -6.8721 -0.5500 29 1 -0.3634 -0.0653 -1.0255 30 1 -0.3633 -0.8555 0.5695 31 1 -0.3633 0.9209 0.4562 32 1 -0.0005 3.0383 -1.5302 33 1 1.5658 -2.0528 -0.4180 34 1 3.0987 -1.1677 -0.6054 35 1 1.0499 -1.0568 2.8729 36 1 0.4850 -2.2013 1.6140 37 1 2.2896 -2.7664 4.0356 38 1 0.8832 -3.7151 3.4469 39 1 3.3799 -4.5058 2.7706 40 1 2.0881 -4.5276 1.5314 41 1 5.3579 -4.7280 1.8538 42 1 4.6628 -5.0676 0.2507 43 1 6.5624 -3.7969 -0.7903 44 1 7.2777 -3.6054 0.8283 45 1 7.3744 -6.0706 1.0773 46 1 6.6590 -6.2621 -0.5413 47 1 9.2740 -4.7979 0.0347 48 1 7.9011 -5.6776 -2.5480 49 1 8.1067 -4.0010 -1.9832 50 1 10.5574 -4.2457 -2.0907 51 1 9.8367 -4.6408 -3.6697 52 1 11.3537 -6.0669 -0.6933 53 1 11.1889 -7.7335 -1.2964 54 1 9.5082 -7.2105 0.4755 55 1 8.7350 -7.5888 -1.0832 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755195871.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:05 Heat of formation + Delta-G solvation = -101.915155 kcal Electronic energy + Delta-G solvation = -30272.985635 eV Core-core repulsion = 26308.748577 eV Total energy + Delta-G solvation = -3964.237058 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.21137 -40.37510 -38.80849 -37.11860 -36.77152 -33.90770 -33.38003 -32.42550 -31.98501 -30.68905 -28.77843 -28.03639 -26.80672 -25.39969 -24.48141 -23.76541 -22.78295 -22.25096 -21.46917 -20.93245 -19.76886 -18.70159 -18.02120 -17.44962 -17.07085 -16.98143 -16.75106 -16.60135 -15.93377 -15.72988 -15.51927 -15.46209 -15.17422 -14.89215 -14.73072 -14.51378 -14.29522 -13.95778 -13.79409 -13.62226 -13.28093 -13.17928 -13.03599 -12.81024 -12.79242 -12.71631 -12.54249 -12.42385 -12.35898 -12.21129 -12.20693 -12.03022 -11.95047 -11.77602 -11.62072 -11.59746 -11.46480 -11.16816 -11.13825 -10.74649 -10.66619 -10.39916 -9.66896 -8.70743 -7.89389 -5.39407 1.39532 1.42487 1.49494 1.72337 2.07639 2.47270 2.97725 3.24808 3.50581 3.68482 3.71900 3.77277 3.82013 3.88661 4.00053 4.04516 4.09539 4.16948 4.23614 4.31908 4.35919 4.41670 4.50732 4.51319 4.52879 4.63061 4.68559 4.73219 4.77553 4.80198 4.84608 4.86184 4.90227 4.95791 5.00365 5.04676 5.06809 5.10030 5.14275 5.15532 5.18596 5.20404 5.30397 5.30917 5.43405 5.46422 5.52574 5.54485 5.58629 5.68384 6.27071 6.31048 6.69752 7.12888 7.29354 7.82421 8.25641 9.14374 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.002374 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.783345 B =11792.451951 C =13529.012123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.612 5.612 3 C -0.261 4.261 4 H 0.050 0.950 5 C -0.049 4.049 6 N -0.937 5.937 7 Si 0.968 3.032 8 H -0.285 1.285 9 H -0.284 1.284 10 H -0.275 1.275 11 C 0.154 3.846 12 C 0.124 3.876 13 H 0.030 0.970 14 C -0.112 4.112 15 C -0.122 4.122 16 C 0.096 3.904 17 N -0.617 5.617 18 C 0.508 3.492 19 O -0.594 6.594 20 C -0.120 4.120 21 C -0.104 4.104 22 C -0.101 4.101 23 C -0.091 4.091 24 C -0.153 4.153 25 C 0.057 3.943 26 O -0.406 6.406 27 C 0.052 3.948 28 C -0.144 4.144 29 H -0.010 1.010 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.251 0.749 33 H 0.048 0.952 34 H 0.014 0.986 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.047 0.953 44 H 0.051 0.949 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.052 0.948 51 H 0.095 0.905 52 H 0.053 0.947 53 H 0.106 0.894 54 H 0.091 0.909 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.359 -24.882 8.589 29.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.336 5.336 3 C -0.391 4.391 4 H 0.068 0.932 5 C -0.244 4.244 6 N -0.583 5.583 7 Si 0.795 3.205 8 H -0.211 1.211 9 H -0.210 1.210 10 H -0.200 1.200 11 C 0.027 3.973 12 C 0.018 3.982 13 H 0.048 0.952 14 C -0.150 4.150 15 C -0.160 4.160 16 C -0.025 4.025 17 N -0.351 5.351 18 C 0.299 3.701 19 O -0.474 6.474 20 C -0.159 4.159 21 C -0.142 4.142 22 C -0.138 4.138 23 C -0.109 4.109 24 C -0.191 4.191 25 C -0.019 4.019 26 O -0.326 6.326 27 C -0.025 4.025 28 C -0.182 4.182 29 H 0.008 0.992 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.104 0.896 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.113 0.887 52 H 0.071 0.929 53 H 0.124 0.876 54 H 0.110 0.890 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.647 -24.385 8.034 28.621 hybrid contribution 0.179 2.034 -0.307 2.065 sum 12.826 -22.352 7.728 26.904 Atomic orbital electron populations 1.20619 0.81982 0.97497 0.96404 1.43961 1.02283 1.00901 1.86434 1.19269 0.99386 0.87759 1.32703 0.93176 1.25820 0.98500 1.01995 0.98048 1.70190 1.19089 1.28472 1.40549 0.85343 0.77571 0.79525 0.78021 1.21108 1.20984 1.20041 1.20964 0.94385 0.87478 0.94515 1.22050 0.92096 0.86369 0.97704 0.95211 1.22531 0.95221 0.99453 0.97807 1.22823 1.00299 0.95820 0.97015 1.22646 0.95683 0.90236 0.93908 1.48858 1.18899 1.14283 1.53100 1.21432 0.79684 0.92129 0.76900 1.90725 1.64983 1.44428 1.47294 1.21695 0.96921 0.92018 1.05314 1.21349 0.94313 0.98005 1.00523 1.21551 0.94832 0.95426 1.01977 1.21211 0.97154 0.97299 0.95277 1.22277 0.97775 1.02084 0.96946 1.22642 0.93030 0.84352 1.01911 1.87895 1.81960 1.33992 1.28706 1.22779 0.96610 1.00185 0.82886 1.22204 0.96800 0.96892 1.02263 0.99207 0.94549 0.94938 0.93993 0.93330 0.96764 0.91673 0.90563 0.90582 0.86852 0.87474 0.89630 0.86135 0.86760 0.93403 0.93038 0.89718 0.91038 0.91469 0.91385 0.91540 0.93008 0.88690 0.92882 0.87630 0.89015 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.09 8.69 127.77 1.11 10.20 16 2 N -0.61 -33.05 2.77 -726.94 -2.01 -35.06 16 3 C -0.26 -15.69 9.63 84.03 0.81 -14.88 16 4 H 0.05 3.11 7.84 -2.91 -0.02 3.09 16 5 C -0.05 -2.90 5.15 84.86 0.44 -2.46 16 6 N -0.94 -57.64 10.65 21.65 0.23 -57.41 16 7 Si 0.97 48.16 29.56 68.60 2.03 50.19 16 8 H -0.28 -14.13 7.11 99.48 0.71 -13.43 16 9 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 10 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 11 C 0.15 7.14 5.11 86.38 0.44 7.58 16 12 C 0.12 4.69 3.07 45.34 0.14 4.83 16 13 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 14 C -0.11 -3.25 5.66 31.78 0.18 -3.07 16 15 C -0.12 -2.18 7.08 31.99 0.23 -1.96 16 16 C 0.10 1.66 6.65 86.85 0.58 2.24 16 17 N -0.62 -18.20 3.06 -788.08 -2.42 -20.61 16 18 C 0.51 16.09 7.58 87.65 0.66 16.75 16 19 O -0.59 -26.10 15.05 -3.03 -0.05 -26.15 16 20 C -0.12 -2.24 4.87 29.84 0.15 -2.09 16 21 C -0.10 -2.10 4.37 30.59 0.13 -1.97 16 22 C -0.10 -1.33 4.69 30.59 0.14 -1.19 16 23 C -0.09 -1.33 2.27 -10.68 -0.02 -1.35 16 24 C -0.15 -2.73 5.10 30.69 0.16 -2.57 16 25 C 0.06 1.02 6.84 72.02 0.49 1.51 16 26 O -0.41 -7.93 10.77 -148.98 -1.60 -9.53 16 27 C 0.05 0.69 6.84 72.01 0.49 1.19 16 28 C -0.14 -1.67 5.43 30.68 0.17 -1.51 16 29 H -0.01 -0.58 7.79 -2.39 -0.02 -0.59 16 30 H 0.04 1.51 6.04 -2.38 -0.01 1.49 16 31 H 0.03 1.78 6.80 -2.39 -0.02 1.76 16 32 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.05 2.07 7.94 -2.39 -0.02 2.05 16 34 H 0.01 0.76 6.85 -2.39 -0.02 0.74 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.08 2.21 6.19 -2.38 -0.01 2.19 16 37 H 0.08 1.33 8.14 -2.38 -0.02 1.32 16 38 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.11 1.13 7.36 -2.38 -0.02 1.11 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.12 1.45 7.54 -2.39 -0.02 1.43 16 42 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.05 1.24 6.40 -2.39 -0.02 1.23 16 44 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.07 1.36 6.74 -2.39 -0.02 1.35 16 50 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 54 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 55 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -80.03 416.45 3.30 -76.72 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.83 Total: 10.59 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 6.29 Total: 11.25 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -4.20 Total: -113.08 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.65 Total: -35.68 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -80.03 3.30 -76.72 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755195871.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.193 kcal (2) G-P(sol) polarization free energy of solvation -80.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds