Wall clock time and date at job start Tue Mar 31 2020 22:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00177 * 2 1 4 4 H 1.08994 * 109.46818 * 30.00311 * 3 2 1 5 5 C 1.50700 * 109.47260 * 270.00250 * 3 2 1 6 6 O 1.21285 * 119.99957 * 344.72213 * 5 3 2 7 7 N 1.34773 * 119.99655 * 164.72414 * 5 3 2 8 8 C 1.46503 * 119.99723 * 184.85920 * 7 5 3 9 9 C 1.46498 * 120.00342 * 4.86359 * 7 5 3 10 10 C 1.52997 * 109.47067 * 241.07014 * 9 7 5 11 11 C 1.53002 * 109.47249 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46986 * 59.99996 * 11 10 9 13 13 N 1.46498 * 109.47108 * 180.02562 * 12 11 10 14 14 C 1.36936 * 120.00134 * 275.00105 * 13 12 11 15 15 H 1.08003 * 119.99910 * 359.97438 * 14 13 12 16 16 C 1.38805 * 120.00369 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99952 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00447 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 59.99602 * 18 16 14 20 20 H 1.48493 * 109.47288 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46724 * 300.00243 * 18 16 14 22 22 C 1.52997 * 109.47130 * 300.00077 * 12 11 10 23 23 C 1.52998 * 109.47108 * 121.07046 * 9 7 5 24 24 C 1.52997 * 109.46898 * 150.00004 * 3 2 1 25 25 C 1.54266 * 110.03216 * 57.92371 * 24 3 2 26 26 C 1.54974 * 104.16048 * 217.13237 * 25 24 3 27 27 C 1.54890 * 102.77114 * 37.88670 * 26 25 24 28 28 C 1.53875 * 110.03512 * 300.70384 * 24 3 2 29 29 H 1.09000 * 109.46695 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46652 * 299.99627 * 1 2 3 31 31 H 1.08994 * 109.46842 * 59.99928 * 1 2 3 32 32 H 1.08995 * 109.47465 * 275.00639 * 8 7 5 33 33 H 1.09004 * 109.46938 * 35.00161 * 8 7 5 34 34 H 1.09000 * 109.46852 * 155.00186 * 8 7 5 35 35 H 1.08996 * 109.47170 * 1.06621 * 9 7 5 36 36 H 1.09007 * 109.47040 * 300.00250 * 10 9 7 37 37 H 1.09005 * 109.47368 * 59.99439 * 10 9 7 38 38 H 1.09005 * 109.47083 * 180.02562 * 11 10 9 39 39 H 1.08997 * 109.46621 * 299.99874 * 11 10 9 40 40 H 1.08997 * 109.46937 * 59.99980 * 12 11 10 41 41 H 0.97001 * 120.00266 * 94.99583 * 13 12 11 42 42 H 0.97006 * 119.99981 * 180.02562 * 17 16 14 43 43 H 1.09008 * 109.47442 * 300.00149 * 22 12 11 44 44 H 1.08996 * 109.47182 * 180.02562 * 22 12 11 45 45 H 1.09005 * 109.47352 * 299.99861 * 23 9 7 46 46 H 1.08996 * 109.47452 * 59.99747 * 23 9 7 47 47 H 1.09007 * 110.01487 * 179.31192 * 24 3 2 48 48 H 1.08996 * 110.48803 * 335.77715 * 25 24 3 49 49 H 1.09007 * 110.48948 * 98.42759 * 25 24 3 50 50 H 1.08994 * 110.71914 * 279.57751 * 26 25 24 51 51 H 1.08998 * 110.76473 * 156.21880 * 26 25 24 52 52 H 1.09000 * 110.48238 * 203.40164 * 27 26 25 53 53 H 1.09004 * 110.60092 * 80.82223 * 27 26 25 54 54 H 1.08996 * 110.03405 * 238.57071 * 28 24 3 55 55 H 1.08996 * 110.03000 * 359.95334 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2146 1.7644 -1.4208 6 8 2.1610 0.9638 -2.3303 7 7 2.4568 3.0645 -1.6807 8 6 2.5496 3.5294 -3.0669 9 6 2.6274 4.0127 -0.5771 10 6 1.5434 5.0894 -0.6577 11 6 1.7212 6.0794 0.4952 12 6 3.0998 6.7354 0.3962 13 7 3.2703 7.6828 1.5004 14 6 2.7980 8.9629 1.3834 15 1 2.3002 9.2740 0.4769 16 6 2.9590 9.8605 2.4299 17 7 3.5653 9.4812 3.5348 18 14 2.3154 11.6068 2.2700 19 1 0.8475 11.5749 2.0474 20 1 2.6104 12.3591 3.5159 21 1 2.9760 12.2744 1.1198 22 6 4.1839 5.6587 0.4767 23 6 4.0061 4.6686 -0.6768 24 6 3.3589 1.2632 0.7212 25 6 4.2934 0.2455 0.0351 26 6 5.0704 -0.4060 1.2071 27 6 3.9918 -0.5169 2.3132 28 6 3.1674 0.7790 2.1692 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.5638 3.3747 -3.4349 33 1 1.8491 2.9687 -3.6858 34 1 2.3048 4.5906 -3.1113 35 1 2.5444 3.4840 0.3724 36 1 1.6264 5.6182 -1.6073 37 1 0.5611 4.6221 -0.5867 38 1 0.9485 6.8462 0.4381 39 1 1.6379 5.5503 1.4445 40 1 3.1830 7.2644 -0.5532 41 1 3.7177 7.4035 2.3145 42 1 3.6775 10.1084 4.2663 43 1 4.1006 5.1295 1.4261 44 1 5.1660 6.1260 0.4066 45 1 4.7784 3.9015 -0.6194 46 1 4.0891 5.1974 -1.6263 47 1 3.8161 2.2527 0.7158 48 1 3.7125 -0.5049 -0.5010 49 1 4.9795 0.7539 -0.6425 50 1 5.8903 0.2355 1.5300 51 1 5.4381 -1.3928 0.9258 52 1 4.4581 -0.5651 3.2972 53 1 3.3612 -1.3906 2.1478 54 1 3.5324 1.5330 2.8665 55 1 2.1136 0.5749 2.3583 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755276771.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:24 Heat of formation + Delta-G solvation = -105.020411 kcal Electronic energy + Delta-G solvation = -32027.698733 eV Core-core repulsion = 28063.327021 eV Total energy + Delta-G solvation = -3964.371712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.85402 -39.82094 -38.96388 -37.71798 -36.75497 -34.89209 -32.48370 -32.14512 -31.68044 -29.57575 -29.17456 -28.35813 -27.59109 -25.79819 -25.27875 -23.53599 -22.80100 -21.67054 -21.01526 -20.52653 -20.34372 -19.06475 -18.37465 -17.92629 -17.13260 -16.89858 -16.52674 -16.42260 -15.97921 -15.80937 -15.52209 -15.35362 -15.12385 -15.07159 -14.57759 -14.29418 -14.13810 -14.02789 -13.93289 -13.62869 -13.43487 -13.22354 -13.05834 -12.96045 -12.76727 -12.58892 -12.45635 -12.23897 -12.19981 -12.07050 -11.98902 -11.94407 -11.88842 -11.68836 -11.60146 -11.57590 -11.50578 -11.34950 -11.29429 -11.10192 -10.80185 -10.26809 -9.67874 -8.94379 -7.90072 -5.17099 1.48203 1.49538 1.51034 1.57081 1.86001 2.59233 2.71796 3.29104 3.43158 3.61008 3.66366 3.67621 3.81978 3.86778 3.92129 4.03321 4.21415 4.27529 4.34166 4.37403 4.41894 4.45075 4.49071 4.52762 4.58023 4.60847 4.62326 4.64898 4.70181 4.73144 4.78680 4.83997 4.85192 4.89191 4.94047 4.99594 5.01056 5.11194 5.11610 5.14844 5.27287 5.27992 5.30550 5.34064 5.44201 5.48254 5.53443 5.55417 5.61082 5.69737 5.99846 6.32613 6.33673 7.09525 7.39254 8.17874 8.39439 9.33139 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014631 B = 0.002909 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.340657 B = 9622.970894 C =10358.833859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.368 6.368 3 C 0.081 3.919 4 H 0.097 0.903 5 C 0.492 3.508 6 O -0.567 6.567 7 N -0.602 5.602 8 C 0.081 3.919 9 C 0.136 3.864 10 C -0.116 4.116 11 C -0.121 4.121 12 C 0.171 3.829 13 N -0.738 5.738 14 C -0.235 4.235 15 H 0.073 0.927 16 C -0.075 4.075 17 N -0.969 5.969 18 Si 0.965 3.035 19 H -0.280 1.280 20 H -0.298 1.298 21 H -0.280 1.280 22 C -0.111 4.111 23 C -0.112 4.112 24 C -0.089 4.089 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.118 4.118 28 C -0.114 4.114 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.098 0.902 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.073 0.927 51 H 0.068 0.932 52 H 0.074 0.926 53 H 0.062 0.938 54 H 0.075 0.925 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 -19.940 -7.081 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.285 6.285 3 C 0.019 3.981 4 H 0.115 0.885 5 C 0.280 3.720 6 O -0.446 6.446 7 N -0.335 5.335 8 C -0.061 4.061 9 C 0.033 3.967 10 C -0.155 4.155 11 C -0.162 4.162 12 C 0.063 3.937 13 N -0.377 5.377 14 C -0.367 4.367 15 H 0.091 0.909 16 C -0.267 4.267 17 N -0.620 5.620 18 Si 0.795 3.205 19 H -0.206 1.206 20 H -0.225 1.225 21 H -0.206 1.206 22 C -0.150 4.150 23 C -0.151 4.151 24 C -0.108 4.108 25 C -0.153 4.153 26 C -0.158 4.158 27 C -0.155 4.155 28 C -0.151 4.151 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.116 0.884 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.091 0.909 51 H 0.086 0.914 52 H 0.093 0.907 53 H 0.080 0.920 54 H 0.094 0.906 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.112 -20.381 -7.659 21.875 hybrid contribution -0.476 1.451 0.196 1.540 sum -2.589 -18.930 -7.464 20.512 Atomic orbital electron populations 1.23021 0.79846 1.04177 1.00299 1.87973 1.20880 1.25315 1.94323 1.22183 0.97968 0.86661 0.91251 0.88503 1.21707 0.75913 0.81840 0.92501 1.90661 1.52044 1.53630 1.48245 1.48081 1.70099 1.07389 1.07944 1.21696 1.02018 1.01023 0.81363 1.21458 0.95746 0.89853 0.89630 1.21813 0.98254 0.95996 0.99418 1.22012 0.98986 0.97466 0.97739 1.20482 0.93289 0.89448 0.90493 1.42631 1.69447 1.08958 1.16671 1.19550 1.28747 0.88891 0.99509 0.90895 1.25452 1.02771 1.01934 0.96528 1.69792 1.49949 1.35904 1.06316 0.85336 0.78207 0.80686 0.76304 1.20593 1.22453 1.20625 1.21645 0.98595 0.95998 0.98751 1.21764 0.95881 0.98199 0.99215 1.22068 0.91808 1.01105 0.95796 1.22307 0.97272 0.97910 0.97780 1.22487 0.97772 1.00679 0.94850 1.22287 0.96909 0.97450 0.98882 1.22119 1.01072 0.97936 0.93980 0.87944 0.92035 0.95067 0.92328 0.92058 0.89069 0.88004 0.90971 0.91299 0.93769 0.92653 0.94288 0.79542 0.94190 0.91605 0.92257 0.90515 0.90813 0.88400 0.92360 0.92710 0.90856 0.91373 0.90736 0.91963 0.90593 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.81 113.37 1.23 1.62 16 2 O -0.37 -8.39 8.38 -130.40 -1.09 -9.49 16 3 C 0.08 1.69 1.20 29.85 0.04 1.73 16 4 H 0.10 1.74 6.83 -2.39 -0.02 1.73 16 5 C 0.49 12.35 6.31 87.66 0.55 12.90 16 6 O -0.57 -18.48 16.29 15.53 0.25 -18.22 16 7 N -0.60 -12.81 2.76 -822.61 -2.27 -15.08 16 8 C 0.08 1.57 9.33 127.77 1.19 2.76 16 9 C 0.14 2.72 1.67 44.99 0.08 2.79 16 10 C -0.12 -2.55 5.21 30.59 0.16 -2.40 16 11 C -0.12 -3.65 5.50 30.59 0.17 -3.48 16 12 C 0.17 5.93 2.77 44.99 0.12 6.06 16 13 N -0.74 -34.72 5.12 -322.96 -1.65 -36.37 16 14 C -0.23 -12.47 9.93 84.03 0.83 -11.64 16 15 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 16 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 17 N -0.97 -57.62 13.06 21.65 0.28 -57.34 16 18 Si 0.96 44.99 29.55 68.60 2.03 47.02 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 C -0.11 -3.04 5.39 30.61 0.17 -2.87 16 23 C -0.11 -2.32 5.01 30.61 0.15 -2.17 16 24 C -0.09 -1.69 2.42 -10.07 -0.02 -1.71 16 25 C -0.12 -2.40 5.65 31.70 0.18 -2.22 16 26 C -0.12 -2.04 6.91 31.92 0.22 -1.81 16 27 C -0.12 -1.89 6.83 31.67 0.22 -1.67 16 28 C -0.11 -1.89 6.22 31.32 0.19 -1.70 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 0.83 8.08 -2.39 -0.02 0.81 16 31 H 0.03 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.30 7.65 -2.39 -0.02 1.28 16 34 H 0.09 1.46 6.50 -2.39 -0.02 1.45 16 35 H 0.10 1.92 4.36 -2.39 -0.01 1.91 16 36 H 0.07 1.53 6.71 -2.38 -0.02 1.51 16 37 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 41 H 0.37 18.94 7.80 -92.71 -0.72 18.22 16 42 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 43 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.08 1.45 7.92 -2.38 -0.02 1.43 16 46 H 0.07 1.49 7.64 -2.39 -0.02 1.47 16 47 H 0.10 1.75 5.76 -2.38 -0.01 1.74 16 48 H 0.06 1.50 7.15 -2.39 -0.02 1.48 16 49 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 50 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 53 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 54 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 55 H 0.07 1.14 7.40 -2.39 -0.02 1.12 16 Total: -1.00 -67.15 415.14 3.62 -63.54 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: 0.13 Total: 33.43 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 5.94 Total: -7.49 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -3.64 Total: -108.79 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.84 Total: -27.71 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -67.15 3.62 -63.54 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755276771.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.484 kcal (2) G-P(sol) polarization free energy of solvation -67.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds