Wall clock time and date at job start Tue Mar 31 2020 22:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00416 * 2 1 4 4 H 1.09001 * 109.47161 * 34.31867 * 3 2 1 5 5 C 1.50702 * 109.47380 * 154.32117 * 3 2 1 6 6 O 1.21284 * 119.99755 * 36.79402 * 5 3 2 7 7 N 1.34776 * 119.99834 * 216.79429 * 5 3 2 8 8 C 1.46497 * 120.00348 * 5.82169 * 7 5 3 9 9 C 1.46499 * 119.99490 * 185.82409 * 7 5 3 10 10 C 1.52992 * 109.47270 * 308.28400 * 9 7 5 11 11 C 1.52998 * 109.47399 * 300.00565 * 10 9 7 12 12 C 1.53007 * 109.46959 * 299.99717 * 11 10 9 13 13 N 1.46496 * 109.47184 * 180.02562 * 12 11 10 14 14 C 1.36933 * 120.00255 * 84.99954 * 13 12 11 15 15 H 1.07998 * 119.99703 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00041 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00291 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99847 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47343 * 89.99964 * 18 16 14 20 20 H 1.48499 * 109.47140 * 209.99992 * 18 16 14 21 21 H 1.48498 * 109.47384 * 329.99868 * 18 16 14 22 22 C 1.52999 * 109.46775 * 60.00189 * 12 11 10 23 23 C 1.53000 * 109.46896 * 299.99469 * 22 12 11 24 24 C 1.53003 * 109.46930 * 274.32231 * 3 2 1 25 25 C 1.54262 * 110.03394 * 302.97383 * 24 3 2 26 26 C 1.54889 * 104.19692 * 217.10616 * 25 24 3 27 27 C 1.54884 * 102.74779 * 37.94435 * 26 25 24 28 28 C 1.53870 * 110.03003 * 185.80916 * 24 3 2 29 29 H 1.09002 * 109.46985 * 295.07827 * 1 2 3 30 30 H 1.08996 * 109.47427 * 175.07777 * 1 2 3 31 31 H 1.08999 * 109.47223 * 55.07028 * 1 2 3 32 32 H 1.08997 * 109.47172 * 88.50673 * 8 7 5 33 33 H 1.08994 * 109.47413 * 208.51051 * 8 7 5 34 34 H 1.09003 * 109.47158 * 328.50892 * 8 7 5 35 35 H 1.09003 * 109.47408 * 68.29221 * 9 7 5 36 36 H 1.08998 * 109.47289 * 60.00578 * 10 9 7 37 37 H 1.08999 * 109.47440 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.47524 * 180.02562 * 11 10 9 39 39 H 1.08999 * 109.47255 * 59.99360 * 11 10 9 40 40 H 1.08999 * 109.46846 * 299.99894 * 12 11 10 41 41 H 0.97004 * 120.00085 * 265.00327 * 13 12 11 42 42 H 0.96999 * 120.00357 * 180.02562 * 17 16 14 43 43 H 1.08997 * 109.46828 * 180.02562 * 22 12 11 44 44 H 1.08990 * 109.47410 * 60.00110 * 22 12 11 45 45 H 1.08990 * 109.47615 * 300.00516 * 23 22 12 46 46 H 1.09005 * 109.47110 * 180.02562 * 23 22 12 47 47 H 1.09004 * 110.01517 * 64.41783 * 24 3 2 48 48 H 1.09000 * 110.48356 * 335.78943 * 25 24 3 49 49 H 1.09003 * 110.48391 * 98.42874 * 25 24 3 50 50 H 1.09001 * 110.75276 * 279.62540 * 26 25 24 51 51 H 1.09005 * 110.91332 * 156.33218 * 26 25 24 52 52 H 1.09006 * 110.48582 * 203.38077 * 27 26 25 53 53 H 1.09001 * 110.60182 * 80.79106 * 27 26 25 54 54 H 1.09001 * 110.03275 * 238.56844 * 28 24 3 55 55 H 1.09001 * 110.03592 * 359.97438 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3827 1.9826 0.5794 5 6 3.3844 1.2435 0.6157 6 8 4.0946 0.2804 0.4179 7 7 3.8240 2.2583 1.3860 8 6 2.9226 3.3607 1.7298 9 6 5.2034 2.2588 1.8795 10 6 5.5014 0.9223 2.5619 11 6 4.5400 0.7232 3.7353 12 6 4.7211 1.8613 4.7418 13 7 3.8010 1.6704 5.8656 14 6 4.1574 0.8634 6.9129 15 1 5.1167 0.3673 6.9101 16 6 3.2853 0.6821 7.9775 17 7 2.1156 1.2854 7.9802 18 14 3.7719 -0.4183 9.4065 19 1 4.4697 0.3900 10.4385 20 1 2.5545 -1.0304 9.9968 21 1 4.6783 -1.4893 8.9203 22 6 4.4230 3.1978 4.0593 23 6 5.3845 3.3969 2.8859 24 6 2.1184 1.8155 -1.4384 25 6 2.9426 0.8272 -2.2891 26 6 3.7604 1.7353 -3.2407 27 6 4.1303 2.9353 -2.3340 28 6 2.8736 3.1558 -1.4670 29 1 -0.3633 0.4356 0.9308 30 1 -0.3634 -1.0238 -0.0882 31 1 -0.3633 0.5884 -0.8425 32 1 2.3788 3.1145 2.6417 33 1 3.5035 4.2694 1.8872 34 1 2.2147 3.5185 0.9160 35 1 5.8884 2.4007 1.0435 36 1 5.3724 0.1115 1.8450 37 1 6.5276 0.9229 2.9295 38 1 4.7526 -0.2287 4.2218 39 1 3.5137 0.7229 3.3681 40 1 5.7474 1.8617 5.1090 41 1 2.9392 2.1156 5.8679 42 1 1.5063 1.1590 8.7243 43 1 4.5525 4.0086 4.7762 44 1 3.3968 3.1974 3.6922 45 1 6.4107 3.3973 3.2531 46 1 5.1725 4.3493 2.4000 47 1 1.1235 1.9382 -1.8666 48 1 3.6082 0.2413 -1.6551 49 1 2.2833 0.1727 -2.8593 50 1 3.1500 2.0612 -4.0829 51 1 4.6576 1.2245 -3.5905 52 1 4.3378 3.8194 -2.9369 53 1 4.9883 2.6922 -1.7071 54 1 2.2455 3.9289 -1.9097 55 1 3.1626 3.4432 -0.4560 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755276772.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:28 Heat of formation + Delta-G solvation = -76.042129 kcal Electronic energy + Delta-G solvation = -32766.947578 eV Core-core repulsion = 28803.832459 eV Total energy + Delta-G solvation = -3963.115120 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.12411 -40.10860 -38.38533 -37.87176 -36.62224 -34.95820 -32.96166 -31.91471 -31.40470 -29.71433 -29.38959 -28.02791 -27.42445 -26.10244 -25.25813 -23.56408 -22.74522 -21.72188 -21.58853 -20.49130 -19.56949 -19.11131 -18.14600 -18.03149 -17.43028 -16.93894 -16.41230 -16.40264 -16.22484 -15.74520 -15.48038 -15.31698 -15.16022 -15.10014 -14.61681 -14.44072 -14.06954 -13.96980 -13.80150 -13.60135 -13.48550 -13.11118 -13.07573 -12.84915 -12.82439 -12.75909 -12.57330 -12.17086 -12.12457 -12.08762 -11.96699 -11.92184 -11.87819 -11.76597 -11.72496 -11.45076 -11.35637 -11.25590 -11.05944 -10.89530 -10.60822 -10.08192 -9.48984 -8.97919 -7.95469 -5.22240 1.43706 1.45167 1.53402 1.54609 1.92246 2.54425 2.92614 3.37021 3.45967 3.61322 3.69844 3.77238 3.82934 3.90536 3.96981 3.99338 4.23339 4.30238 4.35672 4.39324 4.42656 4.43147 4.50856 4.51888 4.58284 4.62392 4.64150 4.67091 4.71434 4.71995 4.81896 4.82614 4.84229 4.86039 4.91827 5.04884 5.07825 5.08517 5.16578 5.24779 5.26053 5.29331 5.32139 5.37169 5.44205 5.47411 5.55419 5.56188 5.66107 5.76713 6.07998 6.28320 6.47401 7.26146 7.33701 8.11851 8.35007 9.27950 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016553 B = 0.003226 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.109501 B = 8677.267058 C = 9381.703643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.394 6.394 3 C 0.073 3.927 4 H 0.096 0.904 5 C 0.520 3.480 6 O -0.554 6.554 7 N -0.598 5.598 8 C 0.048 3.952 9 C 0.160 3.840 10 C -0.136 4.136 11 C -0.108 4.108 12 C 0.175 3.825 13 N -0.736 5.736 14 C -0.237 4.237 15 H 0.067 0.933 16 C -0.074 4.074 17 N -0.967 5.967 18 Si 0.967 3.033 19 H -0.284 1.284 20 H -0.294 1.294 21 H -0.276 1.276 22 C -0.134 4.134 23 C -0.110 4.110 24 C -0.101 4.101 25 C -0.125 4.125 26 C -0.121 4.121 27 C -0.120 4.120 28 C -0.135 4.135 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.016 0.984 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.372 0.628 42 H 0.250 0.750 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.104 0.896 47 H 0.100 0.900 48 H 0.056 0.944 49 H 0.061 0.939 50 H 0.080 0.920 51 H 0.057 0.943 52 H 0.081 0.919 53 H 0.046 0.954 54 H 0.092 0.908 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 9.918 -24.662 26.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.313 6.313 3 C 0.012 3.988 4 H 0.113 0.887 5 C 0.308 3.692 6 O -0.433 6.433 7 N -0.332 5.332 8 C -0.093 4.093 9 C 0.057 3.943 10 C -0.175 4.175 11 C -0.148 4.148 12 C 0.067 3.933 13 N -0.375 5.375 14 C -0.370 4.370 15 H 0.084 0.916 16 C -0.267 4.267 17 N -0.618 5.618 18 Si 0.796 3.204 19 H -0.211 1.211 20 H -0.221 1.221 21 H -0.202 1.202 22 C -0.172 4.172 23 C -0.148 4.148 24 C -0.120 4.120 25 C -0.163 4.163 26 C -0.158 4.158 27 C -0.157 4.157 28 C -0.172 4.172 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.035 0.965 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.204 0.796 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.122 0.878 47 H 0.118 0.882 48 H 0.075 0.925 49 H 0.079 0.921 50 H 0.098 0.902 51 H 0.076 0.924 52 H 0.100 0.900 53 H 0.065 0.935 54 H 0.111 0.889 55 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.278 9.141 -24.629 26.272 hybrid contribution -0.493 -1.052 1.430 1.842 sum -0.215 8.090 -23.200 24.571 Atomic orbital electron populations 1.23045 0.79049 1.04061 1.01180 1.87999 1.21590 1.26497 1.95186 1.22327 0.92208 0.86427 0.97839 0.88659 1.20532 0.88688 0.81795 0.78147 1.90559 1.58649 1.33181 1.60866 1.47861 1.13093 1.22818 1.49400 1.22568 0.94866 0.90610 1.01255 1.21032 0.82004 0.95276 0.95979 1.22018 0.99036 0.99327 0.97120 1.21856 0.98108 0.98724 0.96123 1.20449 0.92626 0.93776 0.86491 1.42602 1.18859 1.56271 1.19774 1.19559 1.00206 1.19767 0.97423 0.91551 1.25465 0.96803 1.02889 1.01505 1.69790 1.09743 1.49112 1.33167 0.85233 0.76644 0.78672 0.79815 1.21076 1.22099 1.20152 1.22178 1.01620 0.95957 0.97429 1.21812 1.00738 0.97917 0.94318 1.22200 1.01496 0.95999 0.92318 1.22421 0.98616 0.97633 0.97634 1.22481 0.99451 0.96094 0.97824 1.22286 0.97233 0.98495 0.97697 1.22534 0.96919 0.95859 1.01914 0.93617 0.88801 0.91462 0.92544 0.87257 0.88702 0.89974 0.91059 0.91192 0.96469 0.95022 0.94854 0.79610 0.94069 0.92011 0.89889 0.89589 0.87763 0.88154 0.92531 0.92064 0.90167 0.92423 0.90005 0.93539 0.88925 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.80 113.37 1.22 1.65 16 2 O -0.39 -11.04 9.72 -133.18 -1.29 -12.33 16 3 C 0.07 1.69 1.92 29.85 0.06 1.74 16 4 H 0.10 1.79 5.78 -2.39 -0.01 1.78 16 5 C 0.52 14.93 5.03 87.66 0.44 15.37 16 6 O -0.55 -20.54 12.28 12.75 0.16 -20.38 16 7 N -0.60 -14.18 1.82 -822.60 -1.49 -15.68 16 8 C 0.05 0.82 6.82 127.77 0.87 1.69 16 9 C 0.16 3.93 3.14 44.99 0.14 4.08 16 10 C -0.14 -4.48 5.07 30.59 0.16 -4.33 16 11 C -0.11 -4.38 5.34 30.60 0.16 -4.22 16 12 C 0.17 7.06 2.77 44.99 0.12 7.19 16 13 N -0.74 -38.04 5.12 -322.94 -1.65 -39.69 16 14 C -0.24 -13.70 9.93 84.03 0.83 -12.87 16 15 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 16 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 17 N -0.97 -59.87 13.06 21.65 0.28 -59.59 16 18 Si 0.97 47.65 29.55 68.60 2.03 49.68 16 19 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 20 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 22 C -0.13 -3.93 4.95 30.59 0.15 -3.78 16 23 C -0.11 -2.30 4.91 30.60 0.15 -2.15 16 24 C -0.10 -1.78 2.90 -10.07 -0.03 -1.81 16 25 C -0.13 -2.72 5.80 31.67 0.18 -2.53 16 26 C -0.12 -2.04 6.91 31.88 0.22 -1.82 16 27 C -0.12 -1.84 6.83 31.67 0.22 -1.62 16 28 C -0.14 -1.85 5.69 31.32 0.18 -1.67 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 0.91 7.55 -2.39 -0.02 0.89 16 32 H 0.06 1.19 6.09 -2.39 -0.01 1.18 16 33 H 0.11 1.32 5.70 -2.39 -0.01 1.31 16 34 H 0.09 1.14 4.57 -2.39 -0.01 1.13 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 2.70 5.47 -2.39 -0.01 2.69 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.03 1.37 7.34 -2.39 -0.02 1.35 16 40 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 41 H 0.37 20.30 7.80 -92.71 -0.72 19.58 16 42 H 0.25 15.03 8.31 -92.71 -0.77 14.25 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.08 2.36 3.99 -2.39 -0.01 2.35 16 45 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.10 1.45 6.58 -2.38 -0.02 1.44 16 47 H 0.10 1.36 7.63 -2.38 -0.02 1.34 16 48 H 0.06 1.68 5.59 -2.39 -0.01 1.67 16 49 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 52 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 53 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 54 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 55 H 0.08 1.11 3.47 -2.39 -0.01 1.10 16 Total: -1.00 -76.05 394.80 3.74 -72.31 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.17 Total: 34.66 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 5.55 Total: -8.98 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -2.87 Total: -114.96 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -1.14 Total: -32.72 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -76.05 3.74 -72.31 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755276772.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.727 kcal (2) G-P(sol) polarization free energy of solvation -76.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds