Wall clock time and date at job start Tue Mar 31 2020 22:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00290 * 2 1 4 4 C 1.50703 * 120.00057 * 179.97438 * 2 1 3 5 5 H 1.09008 * 109.46838 * 5.00173 * 4 2 1 6 6 C 1.52998 * 109.47217 * 245.00610 * 4 2 1 7 7 C 1.50704 * 109.47143 * 174.99919 * 6 4 2 8 8 O 1.21277 * 119.99897 * 359.97438 * 7 6 4 9 9 N 1.34776 * 120.00079 * 179.97438 * 7 6 4 10 10 C 1.46496 * 119.99867 * 175.32259 * 9 7 6 11 11 C 1.53002 * 109.47397 * 62.20001 * 10 9 7 12 12 N 1.46496 * 109.46905 * 58.34688 * 11 10 9 13 13 C 1.36941 * 119.99717 * 174.86494 * 12 11 10 14 14 H 1.07991 * 120.00260 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99561 * 179.97438 * 13 12 11 16 16 N 1.31614 * 120.00320 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99680 * 179.72715 * 15 13 12 18 18 H 1.48496 * 109.46981 * 60.00281 * 17 15 13 19 19 H 1.48500 * 109.47019 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46912 * 300.00754 * 17 15 13 21 21 C 1.52998 * 109.46902 * 182.20388 * 10 9 7 22 22 C 1.53002 * 109.47411 * 59.99622 * 21 10 9 23 23 C 1.52998 * 109.47064 * 60.00278 * 22 21 10 24 24 C 1.52998 * 109.46780 * 300.00109 * 23 22 21 25 25 C 1.52998 * 109.47179 * 302.19869 * 10 9 7 26 26 O 1.42895 * 109.47128 * 125.00263 * 4 2 1 27 27 C 1.42901 * 114.00011 * 270.00117 * 26 4 2 28 28 C 1.53003 * 109.47434 * 179.97438 * 27 26 4 29 29 H 1.08002 * 120.00277 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.00039 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46730 * 269.99635 * 3 2 1 32 32 H 1.09002 * 109.47142 * 29.99319 * 3 2 1 33 33 H 1.08992 * 109.47427 * 149.99429 * 3 2 1 34 34 H 1.08995 * 109.47529 * 55.00109 * 6 4 2 35 35 H 1.08997 * 109.46806 * 294.99597 * 6 4 2 36 36 H 0.96997 * 120.00026 * 355.32134 * 9 7 6 37 37 H 1.08997 * 109.47007 * 298.34278 * 11 10 9 38 38 H 1.08998 * 109.46708 * 178.34872 * 11 10 9 39 39 H 0.96999 * 120.00281 * 354.87164 * 12 11 10 40 40 H 0.97003 * 119.99892 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.47201 * 180.02562 * 21 10 9 42 42 H 1.09003 * 109.47225 * 299.99523 * 21 10 9 43 43 H 1.08992 * 109.47123 * 299.99925 * 22 21 10 44 44 H 1.09004 * 109.47102 * 180.02562 * 22 21 10 45 45 H 1.08996 * 109.47193 * 180.02562 * 23 22 21 46 46 H 1.09006 * 109.47232 * 59.99700 * 23 22 21 47 47 H 1.09003 * 109.47201 * 299.99355 * 24 23 22 48 48 H 1.09003 * 109.47225 * 180.02562 * 24 23 22 49 49 H 1.09004 * 109.46953 * 60.00171 * 25 10 9 50 50 H 1.09000 * 109.47352 * 180.02562 * 25 10 9 51 51 H 1.09000 * 109.47254 * 300.00024 * 27 26 4 52 52 H 1.09004 * 109.47232 * 60.00135 * 27 26 4 53 53 H 1.09000 * 109.47070 * 300.00321 * 28 27 26 54 54 H 1.09004 * 109.46651 * 59.99963 * 28 27 26 55 55 H 1.08993 * 109.47280 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3585 -2.1317 -0.0887 6 6 2.8464 -1.4415 1.3080 7 6 3.5008 -2.7979 1.3626 8 8 3.3550 -3.5788 0.4462 9 7 4.2481 -3.1432 2.4297 10 6 4.7994 -4.4967 2.5308 11 6 5.7586 -4.7451 1.3650 12 7 6.8280 -3.7441 1.3907 13 6 7.8667 -3.8289 0.5024 14 1 7.8973 -4.6334 -0.2174 15 6 8.8797 -2.8801 0.5264 16 7 8.8421 -1.8994 1.4034 17 14 10.3005 -3.0001 -0.6804 18 1 9.7779 -2.9317 -2.0686 19 1 11.2423 -1.8754 -0.4495 20 1 11.0110 -4.2889 -0.4819 21 6 5.5553 -4.6420 3.8531 22 6 4.5961 -4.3936 5.0189 23 6 3.4567 -5.4135 4.9681 24 6 2.7009 -5.2682 3.6458 25 6 3.6601 -5.5166 2.4800 26 8 2.9710 -1.3317 -1.1030 27 6 2.4140 -1.8775 -2.3004 28 6 3.4680 -1.8558 -3.4093 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 2.2453 1.6196 -1.0277 32 1 1.4745 2.0648 0.5137 33 1 3.0159 1.1748 0.5139 34 1 2.1656 -1.3324 2.1522 35 1 3.6116 -0.6667 1.3558 36 1 4.4209 -2.4955 3.1308 37 1 5.2137 -4.6706 0.4239 38 1 6.1912 -5.7414 1.4564 39 1 6.8004 -3.0214 2.0371 40 1 9.5502 -1.2366 1.4204 41 1 5.9659 -5.6489 3.9281 42 1 6.3670 -3.9154 3.8893 43 1 4.1859 -3.3866 4.9437 44 1 5.1347 -4.4967 5.9609 45 1 2.7731 -5.2362 5.7983 46 1 3.8670 -6.4206 5.0433 47 1 2.2906 -4.2611 3.5706 48 1 1.8889 -5.9944 3.6098 49 1 3.1215 -5.4130 1.5380 50 1 4.0702 -6.5236 2.5557 51 1 2.0982 -2.9049 -2.1189 52 1 1.5538 -1.2815 -2.6056 53 1 3.7834 -0.8284 -3.5907 54 1 4.3284 -2.4516 -3.1043 55 1 3.0433 -2.2726 -4.3225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755353035.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:55 Heat of formation + Delta-G solvation = -92.874904 kcal Electronic energy + Delta-G solvation = -32247.175257 eV Core-core repulsion = 28283.330213 eV Total energy + Delta-G solvation = -3963.845044 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.60207 -39.86941 -38.44623 -36.37527 -36.07850 -34.57074 -33.27047 -32.48994 -31.71831 -31.25758 -30.18139 -28.22615 -27.01204 -25.17399 -24.66608 -23.66649 -23.44637 -22.02005 -21.32905 -20.05058 -19.69797 -19.21292 -18.04813 -17.81318 -16.90507 -16.68591 -16.47315 -16.16681 -16.00561 -15.62175 -15.16620 -15.11739 -14.90156 -14.75034 -14.62978 -14.61801 -14.26204 -13.95767 -13.79195 -13.51376 -13.32154 -13.21229 -13.13577 -13.00859 -12.83333 -12.81738 -12.67052 -12.60889 -12.54070 -12.44282 -12.14421 -11.98807 -11.94392 -11.85911 -11.73477 -11.43551 -11.10095 -11.04010 -10.97370 -10.44507 -10.32069 -10.05094 -9.75359 -8.91114 -7.93901 -5.19137 1.22119 1.42740 1.46131 1.51911 1.90782 2.38192 2.55897 2.87027 3.38812 3.64904 3.75835 3.87854 3.90821 3.94204 3.99237 4.13437 4.15497 4.23935 4.27987 4.35098 4.46319 4.47857 4.49222 4.54068 4.60356 4.63309 4.65947 4.72780 4.80978 4.83248 4.85223 4.88802 4.89507 4.94100 5.00590 5.07249 5.15593 5.17497 5.20752 5.22044 5.22553 5.27882 5.35349 5.40747 5.45858 5.52093 5.55905 5.65231 5.84289 5.84956 6.28844 6.43143 6.80414 7.36067 7.53067 8.12100 8.40490 9.29074 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007168 B = 0.005085 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3905.333847 B = 5504.794987 C = 8091.785785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.158 4.158 3 C -0.111 4.111 4 C 0.143 3.857 5 H 0.064 0.936 6 C -0.133 4.133 7 C 0.516 3.484 8 O -0.562 6.562 9 N -0.706 5.706 10 C 0.187 3.813 11 C 0.143 3.857 12 N -0.727 5.727 13 C -0.243 4.243 14 H 0.060 0.940 15 C -0.067 4.067 16 N -0.963 5.963 17 Si 0.966 3.034 18 H -0.286 1.286 19 H -0.289 1.289 20 H -0.278 1.278 21 C -0.112 4.112 22 C -0.111 4.111 23 C -0.112 4.112 24 C -0.105 4.105 25 C -0.121 4.121 26 O -0.391 6.391 27 C 0.067 3.933 28 C -0.147 4.147 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.404 0.596 37 H 0.014 0.986 38 H 0.013 0.987 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.038 0.962 52 H 0.060 0.940 53 H 0.060 0.940 54 H 0.033 0.967 55 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.593 1.351 5.195 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.168 4.168 4 C 0.085 3.915 5 H 0.082 0.918 6 C -0.173 4.173 7 C 0.304 3.696 8 O -0.441 6.441 9 N -0.357 5.357 10 C 0.101 3.899 11 C 0.015 3.985 12 N -0.370 5.370 13 C -0.375 4.375 14 H 0.078 0.922 15 C -0.260 4.260 16 N -0.614 5.614 17 Si 0.795 3.205 18 H -0.213 1.213 19 H -0.215 1.215 20 H -0.204 1.204 21 C -0.150 4.150 22 C -0.149 4.149 23 C -0.150 4.150 24 C -0.142 4.142 25 C -0.160 4.160 26 O -0.311 6.311 27 C -0.010 4.010 28 C -0.204 4.204 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.153 0.847 35 H 0.113 0.887 36 H 0.240 0.760 37 H 0.032 0.968 38 H 0.031 0.969 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.086 0.914 51 H 0.056 0.944 52 H 0.078 0.922 53 H 0.079 0.921 54 H 0.052 0.948 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.408 0.763 4.433 20.898 hybrid contribution 1.320 0.335 -0.593 1.485 sum -19.088 1.098 3.840 19.502 Atomic orbital electron populations 1.23929 0.94304 1.03152 0.99306 1.22205 0.95937 0.95819 1.01878 1.20734 0.99996 0.94053 1.01982 1.20791 0.90389 0.94396 0.85898 0.91773 1.21850 1.01545 0.94584 0.99293 1.20785 0.78490 0.89191 0.81150 1.90601 1.62672 1.53920 1.36877 1.45875 1.52305 1.13834 1.23736 1.20342 0.92400 0.82712 0.94465 1.21144 0.88826 0.91359 0.97165 1.42249 1.23357 1.30797 1.40552 1.19479 0.99911 1.07894 1.10248 0.92216 1.25381 1.01513 0.97683 1.01420 1.69767 1.35500 1.16660 1.39424 0.85327 0.79432 0.76978 0.78736 1.21304 1.21525 1.20414 1.21674 0.97880 1.02394 0.93085 1.21521 0.96261 1.00011 0.97102 1.21519 0.97085 0.99215 0.97132 1.21405 0.97263 1.01821 0.93729 1.21793 0.96419 0.97744 1.00028 1.87972 1.39680 1.83279 1.20186 1.22408 0.96494 0.96916 0.85135 1.21713 0.98696 1.02299 0.97660 0.87877 0.86244 0.92152 0.90079 0.92802 0.84710 0.88663 0.76029 0.96815 0.96888 0.78992 0.94042 0.91179 0.93034 0.91315 0.90744 0.90184 0.91912 0.92170 0.91217 0.92228 0.91432 0.94366 0.92207 0.92095 0.94768 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 13.91 67.78 0.94 -1.86 16 2 C -0.16 -3.36 5.05 -16.49 -0.08 -3.44 16 3 C -0.11 -2.28 9.84 71.24 0.70 -1.58 16 4 C 0.14 3.91 1.86 29.85 0.06 3.96 16 5 H 0.06 1.77 7.25 -2.38 -0.02 1.75 16 6 C -0.13 -3.53 5.22 29.85 0.16 -3.37 16 7 C 0.52 17.49 7.12 87.66 0.62 18.11 16 8 O -0.56 -23.13 11.67 10.75 0.13 -23.00 16 9 N -0.71 -22.09 3.54 -422.93 -1.50 -23.58 16 10 C 0.19 6.29 0.32 3.60 0.00 6.29 16 11 C 0.14 6.52 4.97 86.38 0.43 6.95 16 12 N -0.73 -39.03 5.12 -343.47 -1.76 -40.79 16 13 C -0.24 -14.60 9.99 84.03 0.84 -13.76 16 14 H 0.06 3.58 7.83 -2.91 -0.02 3.55 16 15 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 16 N -0.96 -59.83 13.06 21.65 0.28 -59.55 16 17 Si 0.97 48.56 29.55 68.60 2.03 50.59 16 18 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 19 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 20 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 21 C -0.11 -3.38 4.62 30.59 0.14 -3.24 16 22 C -0.11 -2.37 5.75 30.59 0.18 -2.20 16 23 C -0.11 -2.07 5.92 30.59 0.18 -1.89 16 24 C -0.10 -2.25 5.76 30.59 0.18 -2.08 16 25 C -0.12 -3.53 4.49 30.59 0.14 -3.40 16 26 O -0.39 -13.54 9.07 -135.21 -1.23 -14.77 16 27 C 0.07 1.99 6.46 71.98 0.46 2.45 16 28 C -0.15 -4.27 10.28 71.98 0.74 -3.53 16 29 H 0.10 1.56 7.84 -2.91 -0.02 1.54 16 30 H 0.12 1.51 8.04 -2.91 -0.02 1.49 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.27 8.06 -2.39 -0.02 1.25 16 33 H 0.05 1.25 7.02 -2.39 -0.02 1.23 16 34 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.10 2.69 7.19 -2.39 -0.02 2.67 16 36 H 0.40 10.94 7.40 -92.71 -0.69 10.25 16 37 H 0.01 0.73 6.22 -2.39 -0.01 0.71 16 38 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.38 20.66 6.51 -92.71 -0.60 20.06 16 40 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.05 1.86 7.07 -2.39 -0.02 1.84 16 43 H 0.07 1.34 6.91 -2.39 -0.02 1.33 16 44 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 47 H 0.06 1.29 7.60 -2.39 -0.02 1.28 16 48 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.06 2.04 6.17 -2.38 -0.01 2.03 16 50 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.04 1.20 8.08 -2.39 -0.02 1.18 16 52 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 53 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 54 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 55 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -74.55 423.73 3.67 -70.88 By element: Atomic # 1 Polarization: 46.79 SS G_CDS: -0.43 Total: 46.35 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 6.15 Total: -6.13 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -2.97 Total: -123.93 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -1.10 Total: -37.77 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.03 Total: 50.59 kcal Total: -74.55 3.67 -70.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755353035.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.992 kcal (2) G-P(sol) polarization free energy of solvation -74.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds