Wall clock time and date at job start Tue Mar 31 2020 22:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99774 * 2 1 4 4 C 1.50697 * 120.00173 * 179.97438 * 2 1 3 5 5 H 1.09002 * 109.47037 * 355.00111 * 4 2 1 6 6 C 1.52997 * 109.47152 * 114.99962 * 4 2 1 7 7 C 1.50699 * 109.47479 * 183.88051 * 6 4 2 8 8 O 1.21284 * 119.99385 * 5.69689 * 7 6 4 9 9 N 1.34770 * 120.00298 * 185.70023 * 7 6 4 10 10 C 1.46501 * 120.00030 * 184.76469 * 9 7 6 11 11 C 1.53007 * 109.47007 * 58.06310 * 10 9 7 12 12 N 1.46496 * 109.46955 * 56.21664 * 11 10 9 13 13 C 1.36942 * 119.99803 * 184.38513 * 12 11 10 14 14 H 1.07997 * 119.99896 * 4.95677 * 13 12 11 15 15 C 1.38815 * 120.00085 * 184.94979 * 13 12 11 16 16 N 1.31625 * 120.00001 * 184.42909 * 15 13 12 17 17 Si 1.86802 * 119.99802 * 4.43045 * 15 13 12 18 18 H 1.48504 * 109.46793 * 93.61337 * 17 15 13 19 19 H 1.48498 * 109.47076 * 213.60984 * 17 15 13 20 20 H 1.48498 * 109.47219 * 333.61627 * 17 15 13 21 21 C 1.52993 * 109.47532 * 298.06505 * 10 9 7 22 22 C 1.53007 * 109.46815 * 299.99922 * 21 10 9 23 23 C 1.52999 * 109.46871 * 299.99972 * 22 21 10 24 24 C 1.53003 * 109.47492 * 59.99815 * 23 22 21 25 25 C 1.52993 * 109.47004 * 300.00358 * 24 23 22 26 26 O 1.42899 * 109.47099 * 235.00260 * 4 2 1 27 27 C 1.42896 * 114.00030 * 89.99878 * 26 4 2 28 28 C 1.53001 * 109.47142 * 179.97438 * 27 26 4 29 29 H 1.07998 * 119.99743 * 179.97438 * 1 2 3 30 30 H 1.08007 * 120.00160 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47304 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47695 * 299.99998 * 3 2 1 33 33 H 1.09000 * 109.47098 * 60.00303 * 3 2 1 34 34 H 1.09000 * 109.47353 * 303.88725 * 6 4 2 35 35 H 1.09002 * 109.47169 * 63.88090 * 6 4 2 36 36 H 0.97001 * 120.00283 * 4.76910 * 9 7 6 37 37 H 1.08997 * 109.47275 * 176.21873 * 11 10 9 38 38 H 1.09002 * 109.47103 * 296.22180 * 11 10 9 39 39 H 0.96997 * 120.00300 * 4.39290 * 12 11 10 40 40 H 0.97000 * 119.99717 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.47368 * 59.99638 * 21 10 9 42 42 H 1.09003 * 109.47436 * 179.97438 * 21 10 9 43 43 H 1.09002 * 109.47138 * 179.97438 * 22 21 10 44 44 H 1.09003 * 109.47155 * 59.99784 * 22 21 10 45 45 H 1.09003 * 109.47077 * 299.99859 * 23 22 21 46 46 H 1.09004 * 109.47203 * 180.02562 * 23 22 21 47 47 H 1.08998 * 109.46963 * 179.97438 * 24 23 22 48 48 H 1.08999 * 109.46444 * 60.00065 * 24 23 22 49 49 H 1.09003 * 109.46947 * 299.99578 * 25 24 23 50 50 H 1.09001 * 109.47445 * 179.97438 * 25 24 23 51 51 H 1.09003 * 109.47270 * 59.99949 * 27 26 4 52 52 H 1.08995 * 109.47596 * 300.00053 * 27 26 4 53 53 H 1.08996 * 109.47035 * 300.00027 * 28 27 26 54 54 H 1.08994 * 109.47008 * 60.00176 * 28 27 26 55 55 H 1.09004 * 109.47141 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 1 1.3586 -2.1316 0.0905 6 6 2.8465 -1.4425 -1.3067 7 6 3.5234 -2.7882 -1.3478 8 8 3.3104 -3.6011 -0.4732 9 7 4.3656 -3.0885 -2.3562 10 6 4.9424 -4.4316 -2.4536 11 6 3.8172 -5.4646 -2.5433 12 7 2.9485 -5.1431 -3.6782 13 6 1.8165 -5.8798 -3.9043 14 1 1.5212 -6.6453 -3.2020 15 6 1.0485 -5.6427 -5.0361 16 7 -0.0848 -6.2892 -5.2097 17 14 1.6236 -4.4062 -6.3127 18 1 2.3863 -5.1099 -7.3750 19 1 0.4453 -3.7312 -6.9139 20 1 2.4962 -3.3947 -5.6643 21 6 5.7943 -4.7120 -1.2141 22 6 6.9195 -3.6790 -1.1245 23 6 7.7949 -3.7686 -2.3761 24 6 6.9429 -3.4884 -3.6156 25 6 5.8178 -4.5212 -3.7052 26 8 2.9709 -1.3307 1.1042 27 6 2.4139 -1.8755 2.3021 28 6 3.4682 -1.8540 3.4106 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5401 0.9354 -0.0004 31 1 3.1352 1.1060 0.0005 32 1 1.8002 1.8767 -0.8899 33 1 1.8002 1.8767 0.8900 34 1 2.1627 -1.3538 -2.1508 35 1 3.5986 -0.6556 -1.3642 36 1 4.5899 -2.4153 -3.0176 37 1 4.2454 -6.4571 -2.6832 38 1 3.2336 -5.4471 -1.6228 39 1 3.1752 -4.4084 -4.2697 40 1 -0.6212 -6.1238 -6.0007 41 1 5.1707 -4.6482 -0.3225 42 1 6.2231 -5.7115 -1.2864 43 1 7.5263 -3.8784 -0.2412 44 1 6.4904 -2.6797 -1.0520 45 1 8.2241 -4.7680 -2.4485 46 1 8.5968 -3.0331 -2.3120 47 1 7.5668 -3.5518 -4.5072 48 1 6.5139 -2.4890 -3.5431 49 1 6.2469 -5.5206 -3.7777 50 1 5.2105 -4.3214 -4.5880 51 1 2.0981 -2.9030 2.1214 52 1 1.5537 -1.2793 2.6067 53 1 4.3281 -2.4504 3.1058 54 1 3.7843 -0.8267 3.5914 55 1 3.0432 -2.2691 4.3245 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755353036.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:59 Heat of formation + Delta-G solvation = -90.825982 kcal Electronic energy + Delta-G solvation = -32315.803417 eV Core-core repulsion = 28352.047222 eV Total energy + Delta-G solvation = -3963.756196 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.66117 -39.91764 -38.49551 -36.54477 -36.09473 -34.62404 -33.48949 -32.61376 -31.75470 -31.44745 -30.32490 -28.23201 -27.19699 -25.22498 -24.42032 -23.65819 -23.40632 -22.10015 -21.40429 -20.16552 -19.83518 -19.61974 -18.09354 -17.84877 -16.90645 -16.64395 -16.50091 -16.36391 -16.02514 -15.67385 -15.26905 -15.06666 -14.92113 -14.84572 -14.69747 -14.52809 -14.40034 -14.03939 -13.93849 -13.79367 -13.44261 -13.22030 -13.12681 -13.02636 -12.95387 -12.83759 -12.66090 -12.60592 -12.58399 -12.47960 -12.05118 -12.00976 -11.94972 -11.86227 -11.79003 -11.44190 -11.17756 -11.09171 -11.00853 -10.49637 -10.37416 -10.08263 -9.81747 -9.25860 -8.03445 -5.36360 1.16331 1.31214 1.40054 1.46594 1.87382 2.33039 2.46789 2.77254 3.26917 3.55641 3.63740 3.82445 3.84106 3.91582 3.94317 3.98115 4.15204 4.21725 4.25476 4.34827 4.39111 4.42361 4.48581 4.49924 4.60316 4.62649 4.63650 4.71034 4.78366 4.81025 4.86145 4.86531 4.87398 4.94308 5.01186 5.06828 5.10744 5.15202 5.16030 5.20915 5.24192 5.26529 5.31392 5.38652 5.48618 5.55045 5.60331 5.72806 5.79846 5.80612 6.19546 6.31313 6.75376 7.07444 7.49102 7.81568 8.07339 9.18927 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008238 B = 0.004818 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3398.011117 B = 5809.932105 C = 7718.022752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.152 4.152 3 C -0.106 4.106 4 C 0.144 3.856 5 H 0.042 0.958 6 C -0.133 4.133 7 C 0.519 3.481 8 O -0.562 6.562 9 N -0.709 5.709 10 C 0.184 3.816 11 C 0.146 3.854 12 N -0.742 5.742 13 C -0.233 4.233 14 H 0.040 0.960 15 C -0.065 4.065 16 N -0.987 5.987 17 Si 0.962 3.038 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.244 1.244 21 C -0.121 4.121 22 C -0.104 4.104 23 C -0.113 4.113 24 C -0.112 4.112 25 C -0.119 4.119 26 O -0.376 6.376 27 C 0.061 3.939 28 C -0.140 4.140 29 H 0.086 0.914 30 H 0.122 0.878 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.407 0.593 37 H 0.019 0.981 38 H 0.020 0.980 39 H 0.369 0.631 40 H 0.258 0.742 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.078 0.922 50 H 0.058 0.942 51 H 0.027 0.973 52 H 0.050 0.950 53 H 0.050 0.950 54 H 0.069 0.931 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.993 18.016 10.079 25.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.153 4.153 3 C -0.163 4.163 4 C 0.086 3.914 5 H 0.060 0.940 6 C -0.172 4.172 7 C 0.306 3.694 8 O -0.440 6.440 9 N -0.361 5.361 10 C 0.098 3.902 11 C 0.018 3.982 12 N -0.389 5.389 13 C -0.364 4.364 14 H 0.058 0.942 15 C -0.256 4.256 16 N -0.637 5.637 17 Si 0.789 3.211 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.168 1.168 21 C -0.160 4.160 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.157 4.157 26 O -0.295 6.295 27 C -0.016 4.016 28 C -0.197 4.197 29 H 0.104 0.896 30 H 0.140 0.860 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.143 0.857 36 H 0.243 0.757 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.204 0.796 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.088 0.912 49 H 0.096 0.904 50 H 0.077 0.923 51 H 0.046 0.954 52 H 0.069 0.931 53 H 0.069 0.931 54 H 0.088 0.912 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.899 17.320 10.736 25.243 hybrid contribution -1.027 -0.163 -1.047 1.476 sum 13.873 17.157 9.689 24.097 Atomic orbital electron populations 1.23914 0.95260 1.02616 1.00455 1.22302 0.95598 0.96486 1.00891 1.20715 1.00122 0.92846 1.02613 1.20673 0.90526 0.93898 0.86353 0.93979 1.21812 1.01604 0.95528 0.98290 1.20729 0.78418 0.89344 0.80907 1.90615 1.63129 1.51329 1.38970 1.45869 1.47566 1.13541 1.29168 1.20391 0.91424 0.81630 0.96775 1.21104 0.91462 0.95823 0.89789 1.42483 1.26017 1.37863 1.32507 1.18957 1.00060 1.13019 1.04373 0.94230 1.25576 0.96932 1.02386 1.00717 1.69926 1.15698 1.47965 1.30133 0.85308 0.77446 0.79253 0.79138 1.20447 1.22142 1.16818 1.21799 0.97058 0.99947 0.97207 1.21376 0.95819 0.98436 0.98510 1.21525 0.97631 1.02347 0.93545 1.21536 0.96184 0.98285 0.98986 1.21786 0.96865 1.01677 0.95330 1.87823 1.38882 1.83265 1.19560 1.22461 0.97169 0.96434 0.85538 1.21673 0.98432 1.02938 0.96629 0.89606 0.85996 0.91649 0.90324 0.91025 0.87194 0.85749 0.75688 0.96296 0.96197 0.79647 0.93351 0.92417 0.91400 0.91761 0.92458 0.91786 0.90386 0.90156 0.91203 0.90354 0.92283 0.95422 0.93148 0.93093 0.91209 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.94 13.95 67.78 0.95 -3.00 16 2 C -0.15 -3.34 5.04 -16.49 -0.08 -3.43 16 3 C -0.11 -1.75 9.68 71.24 0.69 -1.06 16 4 C 0.14 3.96 1.79 29.85 0.05 4.01 16 5 H 0.04 1.42 7.21 -2.39 -0.02 1.40 16 6 C -0.13 -3.40 5.26 29.85 0.16 -3.24 16 7 C 0.52 16.79 7.07 87.66 0.62 17.41 16 8 O -0.56 -22.70 11.76 9.03 0.11 -22.59 16 9 N -0.71 -19.97 3.63 -422.93 -1.53 -21.51 16 10 C 0.18 5.64 0.32 3.60 0.00 5.64 16 11 C 0.15 6.21 4.86 86.38 0.42 6.63 16 12 N -0.74 -35.87 4.97 -343.45 -1.71 -37.58 16 13 C -0.23 -14.00 10.47 84.03 0.88 -13.12 16 14 H 0.04 2.69 8.06 -2.91 -0.02 2.67 16 15 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 16 N -0.99 -64.96 13.97 21.65 0.30 -64.66 16 17 Si 0.96 45.26 27.98 68.60 1.92 47.18 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.24 -9.83 6.19 99.48 0.62 -9.22 16 21 C -0.12 -3.43 4.55 30.59 0.14 -3.29 16 22 C -0.10 -2.21 5.77 30.60 0.18 -2.04 16 23 C -0.11 -1.91 5.92 30.59 0.18 -1.73 16 24 C -0.11 -1.99 5.75 30.59 0.18 -1.81 16 25 C -0.12 -3.00 4.65 30.59 0.14 -2.86 16 26 O -0.38 -10.58 9.07 -136.91 -1.24 -11.82 16 27 C 0.06 1.57 6.46 71.98 0.46 2.03 16 28 C -0.14 -2.87 10.28 71.98 0.74 -2.13 16 29 H 0.09 2.04 7.84 -2.91 -0.02 2.02 16 30 H 0.12 2.03 8.05 -2.91 -0.02 2.00 16 31 H 0.06 1.09 7.49 -2.39 -0.02 1.08 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.12 2.39 7.63 -2.39 -0.02 2.37 16 36 H 0.41 8.98 7.26 -92.71 -0.67 8.31 16 37 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.02 0.99 6.31 -2.39 -0.02 0.98 16 39 H 0.37 16.33 4.16 -92.71 -0.39 15.94 16 40 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 41 H 0.06 2.00 6.15 -2.39 -0.01 1.98 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 1.27 7.60 -2.39 -0.02 1.25 16 45 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.07 1.10 6.82 -2.39 -0.02 1.09 16 49 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.06 1.65 7.01 -2.39 -0.02 1.63 16 51 H 0.03 0.85 8.09 -2.39 -0.02 0.83 16 52 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 54 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 55 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -77.01 421.08 3.72 -73.29 By element: Atomic # 1 Polarization: 43.42 SS G_CDS: -0.30 Total: 43.12 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 6.17 Total: -5.43 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -2.94 Total: -123.74 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -1.14 Total: -34.41 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.92 Total: 47.18 kcal Total: -77.01 3.72 -73.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755353036.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.539 kcal (2) G-P(sol) polarization free energy of solvation -77.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds