Wall clock time and date at job start Tue Mar 31 2020 22:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42905 * 113.99553 * 2 1 4 4 C 1.53008 * 109.46991 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47274 * 64.99670 * 4 3 2 6 6 C 1.36946 * 120.00118 * 270.92326 * 5 4 3 7 7 H 1.07994 * 119.99947 * 139.42038 * 6 5 4 8 8 C 1.38812 * 119.99687 * 319.41823 * 6 5 4 9 9 N 1.31619 * 120.00000 * 344.15262 * 8 6 5 10 10 Si 1.86796 * 119.99773 * 164.15630 * 8 6 5 11 11 H 1.48492 * 109.47344 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47277 * 119.99862 * 10 8 6 13 13 H 1.48506 * 109.47064 * 239.99720 * 10 8 6 14 14 C 1.46498 * 120.00151 * 90.91689 * 5 4 3 15 15 C 1.53005 * 109.46819 * 90.00287 * 14 5 4 16 16 N 1.46501 * 109.47180 * 180.02562 * 15 14 5 17 17 C 1.34771 * 119.99901 * 179.97438 * 16 15 14 18 18 O 1.21281 * 120.00300 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99793 * 179.72474 * 17 16 15 20 20 C 1.53010 * 115.54896 * 156.14557 * 19 17 16 21 21 C 1.52997 * 109.47136 * 65.12619 * 20 19 17 22 22 C 1.52998 * 109.47424 * 179.97438 * 21 20 19 23 23 C 1.53001 * 109.46928 * 60.00003 * 22 21 20 24 24 C 1.52997 * 109.47066 * 300.00217 * 23 22 21 25 25 C 1.52998 * 109.47424 * 60.00087 * 24 23 22 26 26 C 1.52996 * 117.49811 * 10.44088 * 19 17 16 27 27 C 1.52994 * 117.50164 * 301.81809 * 19 17 16 28 28 H 1.09004 * 109.47300 * 300.00269 * 1 2 3 29 29 H 1.09001 * 109.47790 * 59.99958 * 1 2 3 30 30 H 1.08999 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47228 * 60.00452 * 3 2 1 32 32 H 1.08999 * 109.47127 * 299.99192 * 3 2 1 33 33 H 1.09004 * 109.46947 * 304.99814 * 4 3 2 34 34 H 1.09000 * 109.47339 * 185.00073 * 4 3 2 35 35 H 0.97001 * 119.99892 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.47294 * 330.00888 * 14 5 4 37 37 H 1.08995 * 109.47625 * 209.99811 * 14 5 4 38 38 H 1.09000 * 109.47212 * 60.00164 * 15 14 5 39 39 H 1.09000 * 109.47080 * 300.00075 * 15 14 5 40 40 H 0.97000 * 120.00034 * 0.02562 * 16 15 14 41 41 H 1.08998 * 109.46692 * 185.12686 * 20 19 17 42 42 H 1.09004 * 109.47459 * 300.00351 * 21 20 19 43 43 H 1.09005 * 109.46775 * 59.99897 * 21 20 19 44 44 H 1.09003 * 109.46639 * 300.00698 * 22 21 20 45 45 H 1.08992 * 109.47545 * 180.02562 * 22 21 20 46 46 H 1.08996 * 109.47010 * 180.02562 * 23 22 21 47 47 H 1.09000 * 109.47137 * 60.00116 * 23 22 21 48 48 H 1.09003 * 109.47783 * 300.00089 * 24 23 22 49 49 H 1.09003 * 109.47113 * 179.97438 * 24 23 22 50 50 H 1.09001 * 109.47279 * 179.97438 * 25 24 23 51 51 H 1.09000 * 109.47117 * 59.99894 * 25 24 23 52 52 H 1.08995 * 117.49835 * 359.97438 * 26 19 17 53 53 H 1.09004 * 117.49604 * 145.01759 * 26 19 17 54 54 H 1.09003 * 117.50068 * 214.98332 * 27 19 17 55 55 H 1.08999 * 117.49714 * 359.97267 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0786 -0.7981 -1.3426 7 1 3.7570 -1.3058 -2.2398 8 6 4.5965 -1.5265 -0.2805 9 7 5.2689 -0.9147 0.6713 10 14 4.3391 -3.3750 -0.2022 11 1 3.5559 -3.8162 -1.3841 12 1 5.6574 -4.0587 -0.1980 13 1 3.5989 -3.7196 1.0383 14 6 4.3056 1.4019 -2.4086 15 6 5.7906 1.7677 -2.3660 16 7 6.1205 2.6055 -3.5216 17 6 7.3808 3.0513 -3.6929 18 8 8.2418 2.7592 -2.8901 19 6 7.7215 3.9081 -4.8849 20 6 8.9471 4.8093 -4.7211 21 6 10.2000 3.9441 -4.5709 22 6 11.4256 4.8453 -4.4078 23 6 11.2555 5.7170 -3.1620 24 6 10.0026 6.5822 -3.3122 25 6 8.7770 5.6810 -3.4753 26 6 6.5606 4.4399 -5.7276 27 6 7.4542 3.3247 -6.2738 28 1 -0.3634 0.5139 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8514 0.5684 0.8410 34 1 3.9784 2.1767 0.0889 35 1 5.6304 -1.4237 1.4137 36 1 3.7064 2.3120 -2.3809 37 1 4.0925 0.8543 -3.3266 38 1 6.3899 0.8576 -2.3937 39 1 6.0038 2.3153 -1.4480 40 1 5.4318 2.8401 -4.1630 41 1 9.0490 5.4470 -5.5992 42 1 10.0980 3.3063 -3.6929 43 1 10.3214 3.3234 -5.4587 44 1 11.5273 5.4827 -5.2861 45 1 12.3182 4.2289 -4.3012 46 1 12.1284 6.3593 -3.0460 47 1 11.1536 5.0796 -2.2836 48 1 10.1043 7.2197 -4.1905 49 1 9.8811 7.2029 -2.4244 50 1 7.8843 6.2975 -3.5819 51 1 8.6751 5.0436 -2.5970 52 1 5.5504 4.1698 -5.4200 53 1 6.6697 5.4322 -6.1654 54 1 8.1513 3.5831 -7.0710 55 1 7.0324 2.3210 -6.3254 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755841791.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:23 Heat of formation + Delta-G solvation = -77.252863 kcal Electronic energy + Delta-G solvation = -30800.151965 eV Core-core repulsion = 26836.984344 eV Total energy + Delta-G solvation = -3963.167621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.52592 -39.17026 -38.77587 -37.38521 -37.31442 -35.54026 -33.30710 -31.59088 -31.39860 -30.98146 -29.09592 -27.11597 -26.00077 -24.92720 -23.93698 -23.82228 -22.95946 -22.62974 -21.88297 -20.71319 -20.32643 -18.66297 -17.82324 -17.34978 -17.12458 -16.74028 -16.45127 -16.37860 -16.11933 -15.61428 -15.40358 -15.33203 -15.20441 -14.99868 -14.84431 -14.70669 -14.29213 -14.02468 -13.61131 -13.44782 -13.36730 -13.29408 -13.01199 -12.90529 -12.77760 -12.46104 -12.39456 -12.35159 -12.24212 -12.21056 -11.98840 -11.94428 -11.79511 -11.73848 -11.53837 -11.38175 -11.33992 -10.84767 -10.61068 -10.51167 -10.42497 -10.32180 -10.00787 -8.51748 -7.76091 -5.43872 1.44919 1.47545 1.56454 1.60467 2.21382 2.56318 2.93656 3.22150 3.38201 3.52203 3.63364 3.75961 3.86077 3.90323 4.03544 4.10710 4.23695 4.27634 4.37001 4.45786 4.49819 4.54596 4.55760 4.63464 4.67881 4.68289 4.69168 4.69425 4.74036 4.75784 4.77638 4.84501 4.85522 4.92023 4.95068 5.02708 5.07682 5.12029 5.15574 5.21371 5.22431 5.31592 5.33791 5.41617 5.42396 5.46967 5.53815 5.69865 5.76136 5.84434 6.48580 6.67414 6.68842 7.22635 7.39397 7.87920 8.38755 9.20207 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.002601 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.341448 B =10764.211104 C =11325.755051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.058 3.942 4 C 0.139 3.861 5 N -0.585 5.585 6 C -0.242 4.242 7 H 0.052 0.948 8 C -0.027 4.027 9 N -0.921 5.921 10 Si 0.952 3.048 11 H -0.267 1.267 12 H -0.296 1.296 13 H -0.292 1.292 14 C 0.146 3.854 15 C 0.125 3.875 16 N -0.715 5.715 17 C 0.536 3.464 18 O -0.580 6.580 19 C -0.170 4.170 20 C -0.023 4.023 21 C -0.124 4.124 22 C -0.112 4.112 23 C -0.122 4.122 24 C -0.111 4.111 25 C -0.117 4.117 26 C -0.142 4.142 27 C -0.144 4.144 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.247 0.753 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.023 0.977 39 H 0.029 0.971 40 H 0.410 0.590 41 H 0.102 0.898 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.074 0.926 47 H 0.034 0.966 48 H 0.082 0.918 49 H 0.059 0.941 50 H 0.068 0.932 51 H 0.031 0.969 52 H 0.106 0.894 53 H 0.130 0.870 54 H 0.125 0.875 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 17.072 -14.858 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.021 4.021 4 C 0.013 3.987 5 N -0.306 5.306 6 C -0.373 4.373 7 H 0.069 0.931 8 C -0.224 4.224 9 N -0.566 5.566 10 Si 0.781 3.219 11 H -0.191 1.191 12 H -0.224 1.224 13 H -0.219 1.219 14 C 0.019 3.981 15 C -0.002 4.002 16 N -0.368 5.368 17 C 0.324 3.676 18 O -0.460 6.460 19 C -0.173 4.173 20 C -0.041 4.041 21 C -0.161 4.161 22 C -0.150 4.150 23 C -0.160 4.160 24 C -0.149 4.149 25 C -0.155 4.155 26 C -0.179 4.179 27 C -0.181 4.181 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.247 0.753 41 H 0.120 0.880 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.098 0.902 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.053 0.947 48 H 0.100 0.900 49 H 0.078 0.922 50 H 0.086 0.914 51 H 0.050 0.950 52 H 0.124 0.876 53 H 0.149 0.851 54 H 0.144 0.856 55 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.952 16.605 -14.135 21.894 hybrid contribution -0.346 -1.279 0.801 1.548 sum 1.606 15.326 -13.334 20.378 Atomic orbital electron populations 1.22823 0.81553 1.02634 1.00076 1.88147 1.19622 1.28708 1.95190 1.23173 0.96261 0.84036 0.98605 1.20985 0.90041 0.96080 0.91633 1.43776 1.74973 1.02142 1.09688 1.19037 1.33615 0.82947 1.01683 0.93083 1.25781 0.96628 1.01074 0.98936 1.70036 1.37450 1.35832 1.13277 0.85456 0.76671 0.82120 0.77623 1.19143 1.22390 1.21924 1.21149 0.90440 0.94851 0.91653 1.21800 0.99588 0.91945 0.86835 1.46013 1.10868 1.52182 1.27767 1.20270 0.81740 0.79279 0.86298 1.90643 1.48618 1.59517 1.47271 1.21629 1.01539 1.03345 0.90799 1.20473 0.90567 0.94217 0.98852 1.21666 0.94647 0.98157 1.01645 1.21492 0.97054 0.97972 0.98434 1.21548 0.98465 0.98268 0.97703 1.21482 0.93718 0.97328 1.02348 1.21574 0.98686 0.97711 0.97530 1.23295 0.94164 1.00385 1.00013 1.23173 1.03057 0.99017 0.92882 0.93646 0.93661 0.89991 0.93491 0.93769 0.91577 0.93304 0.94388 0.91323 0.92507 0.95870 0.95285 0.75266 0.87999 0.93427 0.92223 0.90198 0.92498 0.90776 0.94699 0.89958 0.92187 0.91354 0.95008 0.87573 0.85140 0.85642 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.03 16 2 O -0.40 -17.01 10.13 -148.98 -1.51 -18.52 16 3 C 0.06 2.23 6.28 71.98 0.45 2.69 16 4 C 0.14 6.46 5.72 86.38 0.49 6.96 16 5 N -0.59 -28.47 2.39 -701.99 -1.68 -30.15 16 6 C -0.24 -13.33 8.92 84.03 0.75 -12.58 16 7 H 0.05 2.83 7.88 -2.91 -0.02 2.81 16 8 C -0.03 -1.57 5.08 84.86 0.43 -1.14 16 9 N -0.92 -55.77 11.33 21.65 0.25 -55.52 16 10 Si 0.95 47.01 29.58 68.60 2.03 49.04 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 13 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 14 C 0.15 5.68 5.78 86.38 0.50 6.18 16 15 C 0.13 5.19 6.00 86.38 0.52 5.71 16 16 N -0.71 -22.39 5.51 -463.05 -2.55 -24.94 16 17 C 0.54 17.76 6.81 87.66 0.60 18.35 16 18 O -0.58 -25.31 13.21 -3.03 -0.04 -25.35 16 19 C -0.17 -3.74 1.60 -52.93 -0.08 -3.82 16 20 C -0.02 -0.47 1.94 -10.79 -0.02 -0.49 16 21 C -0.12 -3.03 5.02 30.59 0.15 -2.88 16 22 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 23 C -0.12 -2.53 5.92 30.59 0.18 -2.35 16 24 C -0.11 -2.10 5.92 30.59 0.18 -1.92 16 25 C -0.12 -2.72 4.94 30.59 0.15 -2.56 16 26 C -0.14 -1.93 9.63 30.59 0.29 -1.63 16 27 C -0.14 -2.29 9.95 30.59 0.30 -1.99 16 28 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 3.68 5.51 -2.39 -0.01 3.67 16 34 H 0.05 2.11 8.07 -2.39 -0.02 2.09 16 35 H 0.25 14.64 8.31 -92.71 -0.77 13.86 16 36 H 0.07 2.23 8.07 -2.39 -0.02 2.22 16 37 H 0.06 2.11 8.04 -2.39 -0.02 2.09 16 38 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.41 9.48 6.41 -92.71 -0.59 8.88 16 41 H 0.10 1.51 8.09 -2.39 -0.02 1.49 16 42 H 0.05 1.62 5.86 -2.38 -0.01 1.61 16 43 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.03 1.01 6.57 -2.39 -0.02 1.00 16 52 H 0.11 1.30 6.46 -2.39 -0.02 1.28 16 53 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16 54 H 0.13 1.47 8.14 -2.39 -0.02 1.46 16 55 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -74.81 425.75 3.07 -71.74 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.25 Total: 25.17 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 6.33 Total: 8.53 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -3.99 Total: -110.61 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -1.55 Total: -43.88 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -74.81 3.07 -71.74 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755841791.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.512 kcal (2) G-P(sol) polarization free energy of solvation -74.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds