Wall clock time and date at job start Tue Mar 31 2020 22:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99677 * 2 1 4 4 C 1.50704 * 109.47051 * 274.99718 * 3 2 1 5 5 H 1.08007 * 119.99945 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00144 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99753 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00070 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47159 * 59.99965 * 8 6 4 10 10 H 1.48501 * 109.47245 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47150 * 299.99968 * 8 6 4 12 12 S 1.65603 * 120.00036 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.40082 * 156.46170 * 12 2 1 14 14 O 1.42095 * 106.40132 * 23.53668 * 12 2 1 15 15 C 1.76195 * 107.21730 * 269.99800 * 12 2 1 16 16 C 1.33360 * 125.19311 * 89.99898 * 15 12 2 17 17 C 1.38455 * 114.93077 * 180.02562 * 16 15 12 18 18 C 1.33481 * 114.89319 * 359.97438 * 17 16 15 19 19 Br 1.89093 * 125.20585 * 179.97438 * 18 17 16 20 20 S 1.75876 * 109.58389 * 0.02562 * 18 17 16 21 21 H 1.09000 * 109.47321 * 270.00049 * 1 2 3 22 22 H 1.09003 * 109.47661 * 30.00126 * 1 2 3 23 23 H 1.09002 * 109.47354 * 150.00403 * 1 2 3 24 24 H 1.08994 * 109.47574 * 34.99700 * 3 2 1 25 25 H 1.09004 * 109.47057 * 155.00103 * 3 2 1 26 26 H 0.96999 * 119.99787 * 180.02562 * 7 6 4 27 27 H 1.08001 * 122.53400 * 0.02563 * 16 15 12 28 28 H 1.07999 * 122.55457 * 179.73677 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4155 5 1 1.9282 1.1938 -2.2332 6 6 3.0005 2.9504 -1.6665 7 7 3.5032 3.6471 -0.6707 8 14 3.1783 3.5667 -3.4209 9 1 1.8317 3.7731 -4.0119 10 1 3.9209 4.8527 -3.4210 11 1 3.9232 2.5644 -4.2245 12 16 2.2930 -1.4342 0.0006 13 8 3.5759 -1.1570 -0.5439 14 8 1.4113 -2.4067 -0.5433 15 6 2.5538 -1.8850 1.6838 16 6 1.7238 -2.6266 2.4184 17 6 2.1388 -2.8515 3.7200 18 6 3.3072 -2.2921 4.0417 19 35 4.1441 -2.4117 5.7331 20 16 3.9484 -1.4255 2.6520 21 1 -0.3634 0.0000 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 1.6501 2.0043 0.5894 25 1 3.1857 1.1178 0.4343 26 1 3.9666 4.4807 -0.8473 27 1 0.7978 -3.0219 2.0275 28 1 1.5593 -3.4319 4.4227 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032211368.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:27 Heat of formation + Delta-G solvation = -32.213014 kcal Electronic energy + Delta-G solvation = -17241.689777 eV Core-core repulsion = 14172.236302 eV Total energy + Delta-G solvation = -3069.453475 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 338.939 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.01671 -36.69973 -35.61329 -35.31109 -32.48299 -32.23454 -28.90557 -27.83769 -25.16649 -24.22447 -22.35456 -20.37527 -18.77649 -17.80919 -16.77254 -16.56974 -16.10034 -15.41006 -14.79053 -14.48325 -13.81650 -13.55633 -13.33869 -13.16239 -12.75806 -12.40222 -12.19562 -11.74682 -11.60474 -11.45960 -11.33741 -11.21296 -11.11683 -10.88023 -10.75983 -10.59130 -10.51639 -10.07369 -9.82466 -9.17817 -8.68289 -8.47472 -8.16722 -6.09764 -4.14444 0.19597 0.72708 0.89389 1.54681 1.61356 2.22052 3.32528 3.36284 3.40452 3.57734 4.18320 4.42223 4.85729 4.96091 5.18188 5.25424 5.55025 5.57129 5.60617 5.94495 6.01395 6.20627 6.48028 7.13115 7.28956 7.49045 7.86914 8.13944 8.87489 9.50963 10.98850 Molecular weight = 338.94amu Principal moments of inertia in cm(-1) A = 0.020579 B = 0.003817 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.278586 B = 7333.737862 C = 8127.594790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.980 5.980 3 C 0.254 3.746 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.703 3.297 13 O -0.933 6.933 14 O -0.965 6.965 15 C -0.771 4.771 16 C -0.010 4.010 17 C -0.119 4.119 18 C -0.190 4.190 19 Br 0.013 6.987 20 S 0.295 5.705 21 H 0.042 0.958 22 H 0.083 0.917 23 H 0.069 0.931 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.265 0.735 27 H 0.160 0.840 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.292 -12.242 14.064 18.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.822 5.822 3 C 0.132 3.868 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.199 1.199 12 S 2.785 3.215 13 O -0.923 6.923 14 O -0.955 6.955 15 C -0.970 4.970 16 C -0.046 4.046 17 C -0.154 4.154 18 C -0.390 4.390 19 Br 0.097 6.903 20 S 0.561 5.439 21 H 0.060 0.940 22 H 0.102 0.898 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.178 0.822 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.241 -11.696 13.810 18.099 hybrid contribution -1.384 -0.282 -0.105 1.416 sum -1.625 -11.978 13.705 18.274 Atomic orbital electron populations 1.21445 0.79473 1.03915 1.00625 1.57334 1.14531 1.22380 1.87936 1.19177 0.91133 0.78405 0.98092 1.21423 1.36509 1.06492 0.92670 0.91998 1.24929 0.94981 0.96427 0.97568 1.69910 1.37057 1.15328 1.31034 0.86558 0.78353 0.78042 0.84535 1.20128 1.21143 1.19900 1.01982 0.74051 0.72895 0.72538 1.93631 1.40035 1.84186 1.74415 1.93511 1.66360 1.60350 1.75284 1.36851 1.08764 1.18858 1.32541 1.19875 0.99140 0.93715 0.91824 1.20375 0.95416 1.02245 0.97382 1.26843 1.02980 1.10243 0.98892 1.96734 1.78904 1.97591 1.17089 1.84601 1.17081 1.45939 0.96260 0.93989 0.89809 0.91221 0.94270 0.94304 0.92527 0.82210 0.82856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 10.68 59.85 0.64 2.13 15 2 N -0.98 -19.80 3.17 -123.05 -0.39 -20.19 15 3 C 0.25 6.19 5.08 -5.19 -0.03 6.16 15 4 C -0.53 -14.56 9.38 -34.44 -0.32 -14.88 15 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 15 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 7 N -0.89 -25.60 13.29 55.43 0.74 -24.87 15 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 15 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 12 S 2.70 52.90 5.79 -107.50 -0.62 52.28 15 13 O -0.93 -21.65 16.88 -57.17 -0.97 -22.61 15 14 O -0.96 -19.06 16.40 -57.17 -0.94 -20.00 15 15 C -0.77 -12.40 6.57 29.03 0.19 -12.21 15 16 C -0.01 -0.14 9.84 -41.21 -0.41 -0.54 15 17 C -0.12 -1.38 10.11 -41.17 -0.42 -1.80 15 18 C -0.19 -2.42 6.97 29.07 0.20 -2.21 15 19 Br 0.01 0.14 34.07 -68.01 -2.32 -2.18 15 20 S 0.29 4.51 23.22 -107.50 -2.50 2.01 15 21 H 0.04 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.08 1.38 8.07 -51.93 -0.42 0.96 15 23 H 0.07 1.04 7.02 -51.93 -0.36 0.68 15 24 H 0.04 0.96 8.11 -51.93 -0.42 0.54 15 25 H 0.04 1.00 7.61 -51.93 -0.40 0.60 15 26 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 27 H 0.16 1.73 8.05 -52.49 -0.42 1.30 15 28 H 0.15 1.32 8.06 -52.49 -0.42 0.89 15 LS Contribution 298.94 15.07 4.50 4.50 Total: -1.00 -31.38 298.94 -10.16 -41.54 By element: Atomic # 1 Polarization: -2.81 SS G_CDS: -2.41 Total: -5.22 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: -0.24 Total: -21.69 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.35 Total: -45.06 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -1.90 Total: -42.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 57.41 SS G_CDS: -3.12 Total: 54.29 kcal Atomic # 35 Polarization: 0.14 SS G_CDS: -2.32 Total: -2.18 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.38 -10.16 -41.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032211368.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.327 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds