Wall clock time and date at job start Tue Mar 31 2020 22:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99677 * 2 1 4 4 C 1.50704 * 109.47051 * 274.99718 * 3 2 1 5 5 H 1.08007 * 119.99945 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00144 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99753 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00070 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47159 * 59.99965 * 8 6 4 10 10 H 1.48501 * 109.47245 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47150 * 299.99968 * 8 6 4 12 12 S 1.65603 * 120.00036 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.40082 * 156.46170 * 12 2 1 14 14 O 1.42095 * 106.40132 * 23.53668 * 12 2 1 15 15 C 1.76195 * 107.21730 * 269.99800 * 12 2 1 16 16 C 1.33360 * 125.19311 * 89.99898 * 15 12 2 17 17 C 1.38455 * 114.93077 * 180.02562 * 16 15 12 18 18 C 1.33481 * 114.89319 * 359.97438 * 17 16 15 19 19 Br 1.89093 * 125.20585 * 179.97438 * 18 17 16 20 20 S 1.75876 * 109.58389 * 0.02562 * 18 17 16 21 21 H 1.09000 * 109.47321 * 270.00049 * 1 2 3 22 22 H 1.09003 * 109.47661 * 30.00126 * 1 2 3 23 23 H 1.09002 * 109.47354 * 150.00403 * 1 2 3 24 24 H 1.08994 * 109.47574 * 34.99700 * 3 2 1 25 25 H 1.09004 * 109.47057 * 155.00103 * 3 2 1 26 26 H 0.96999 * 119.99787 * 180.02562 * 7 6 4 27 27 H 1.08001 * 122.53400 * 0.02563 * 16 15 12 28 28 H 1.07999 * 122.55457 * 179.73677 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4155 5 1 1.9282 1.1938 -2.2332 6 6 3.0005 2.9504 -1.6665 7 7 3.5032 3.6471 -0.6707 8 14 3.1783 3.5667 -3.4209 9 1 1.8317 3.7731 -4.0119 10 1 3.9209 4.8527 -3.4210 11 1 3.9232 2.5644 -4.2245 12 16 2.2930 -1.4342 0.0006 13 8 3.5759 -1.1570 -0.5439 14 8 1.4113 -2.4067 -0.5433 15 6 2.5538 -1.8850 1.6838 16 6 1.7238 -2.6266 2.4184 17 6 2.1388 -2.8515 3.7200 18 6 3.3072 -2.2921 4.0417 19 35 4.1441 -2.4117 5.7331 20 16 3.9484 -1.4255 2.6520 21 1 -0.3634 0.0000 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 1.6501 2.0043 0.5894 25 1 3.1857 1.1178 0.4343 26 1 3.9666 4.4807 -0.8473 27 1 0.7978 -3.0219 2.0275 28 1 1.5593 -3.4319 4.4227 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032211368.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:26 Heat of formation + Delta-G solvation = -53.650355 kcal Electronic energy + Delta-G solvation = -17242.619370 eV Core-core repulsion = 14172.236302 eV Total energy + Delta-G solvation = -3070.383068 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 338.939 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.09294 -38.28022 -37.28048 -36.94063 -34.51063 -33.23319 -29.98194 -29.66958 -26.81408 -25.32360 -24.23238 -21.54258 -20.00927 -19.31374 -18.52991 -18.33683 -17.40288 -17.03990 -16.36070 -15.93381 -15.21514 -14.96199 -14.80146 -14.16930 -14.07426 -13.96794 -13.80207 -13.37796 -13.20155 -13.04287 -12.94099 -12.77138 -12.47959 -12.40872 -12.30519 -12.09609 -11.93646 -11.76719 -11.49171 -10.58906 -10.23405 -9.82644 -9.82186 -8.19890 -6.31924 -0.93950 -0.62815 -0.25266 0.48252 0.50299 1.20735 1.41092 1.44530 1.51496 2.07631 2.42035 2.70573 3.11540 3.42396 3.97923 4.08782 4.17368 4.52146 4.60625 4.74020 4.81851 5.03716 5.08782 5.18534 5.42570 5.68330 5.86619 6.08664 6.75844 7.36899 8.87760 Molecular weight = 338.94amu Principal moments of inertia in cm(-1) A = 0.020579 B = 0.003817 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.278586 B = 7333.737862 C = 8127.594790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.990 5.990 3 C 0.268 3.732 4 C -0.550 4.550 5 H 0.056 0.944 6 C 0.013 3.987 7 N -0.924 5.924 8 Si 0.956 3.044 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.277 1.277 12 S 2.716 3.284 13 O -0.982 6.982 14 O -0.971 6.971 15 C -0.793 4.793 16 C 0.014 3.986 17 C -0.111 4.111 18 C -0.179 4.179 19 Br 0.038 6.962 20 S 0.235 5.765 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.033 0.967 25 H 0.017 0.983 26 H 0.268 0.732 27 H 0.189 0.811 28 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 -13.466 15.261 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.830 5.830 3 C 0.145 3.855 4 C -0.590 4.590 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.780 3.220 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.202 1.202 12 S 2.804 3.196 13 O -0.972 6.972 14 O -0.961 6.961 15 C -0.997 4.997 16 C -0.022 4.022 17 C -0.145 4.145 18 C -0.378 4.378 19 Br 0.122 6.878 20 S 0.501 5.499 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.102 0.898 24 H 0.051 0.949 25 H 0.035 0.965 26 H 0.077 0.923 27 H 0.206 0.794 28 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.714 -12.913 14.959 19.836 hybrid contribution -0.967 -0.033 -0.287 1.010 sum -2.681 -12.946 14.672 19.749 Atomic orbital electron populations 1.21714 0.77225 1.04287 1.02987 1.57199 1.16045 1.21011 1.88780 1.18717 0.90544 0.79958 0.96305 1.21791 1.36459 1.06736 0.93984 0.92581 1.25739 0.94734 0.96736 1.01432 1.70004 1.37704 1.15737 1.32859 0.85647 0.78883 0.77550 0.79907 1.18691 1.20248 1.20221 1.01050 0.72842 0.72401 0.73312 1.93567 1.42193 1.84785 1.76668 1.93492 1.66205 1.60030 1.76416 1.36118 1.10505 1.22098 1.30942 1.20386 0.98982 0.90925 0.91923 1.20781 0.94949 1.01532 0.97197 1.27022 1.03044 1.08958 0.98805 1.96775 1.78796 1.97388 1.14827 1.84827 1.18320 1.48147 0.98580 0.90628 0.90481 0.89828 0.94938 0.96461 0.92316 0.79364 0.78775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.59 10.68 127.77 1.36 3.95 15 2 N -0.99 -40.20 3.17 -543.22 -1.72 -41.92 15 3 C 0.27 13.47 5.08 85.63 0.43 13.90 15 4 C -0.55 -30.82 9.38 25.60 0.24 -30.58 15 5 H 0.06 3.12 7.81 -2.91 -0.02 3.09 15 6 C 0.01 0.75 5.46 84.65 0.46 1.21 15 7 N -0.92 -53.85 13.29 21.45 0.28 -53.56 15 8 Si 0.96 44.22 29.54 68.60 2.03 46.25 15 9 H -0.26 -11.48 7.11 99.48 0.71 -10.77 15 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 15 12 S 2.72 107.00 5.79 -56.49 -0.33 106.68 15 13 O -0.98 -47.48 16.88 -128.00 -2.16 -49.64 15 14 O -0.97 -37.54 16.40 -128.00 -2.10 -39.64 15 15 C -0.79 -24.81 6.57 66.72 0.44 -24.37 15 16 C 0.01 0.32 9.84 21.22 0.21 0.53 15 17 C -0.11 -2.14 10.11 21.24 0.21 -1.92 15 18 C -0.18 -4.13 6.97 66.74 0.46 -3.66 15 19 Br 0.04 0.72 34.07 -20.37 -0.69 0.02 15 20 S 0.24 7.21 23.22 -56.49 -1.31 5.90 15 21 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.08 2.50 8.07 -2.39 -0.02 2.48 15 23 H 0.08 2.36 7.02 -2.39 -0.02 2.35 15 24 H 0.03 1.65 8.11 -2.39 -0.02 1.63 15 25 H 0.02 0.94 7.61 -2.38 -0.02 0.92 15 26 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 27 H 0.19 3.24 8.05 -2.91 -0.02 3.21 15 28 H 0.20 2.22 8.06 -2.91 -0.02 2.20 15 Total: -1.00 -68.81 298.94 -0.99 -69.80 By element: Atomic # 1 Polarization: -4.11 SS G_CDS: 1.19 Total: -2.92 kcal Atomic # 6 Polarization: -44.77 SS G_CDS: 3.83 Total: -40.94 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -1.44 Total: -95.49 kcal Atomic # 8 Polarization: -85.03 SS G_CDS: -4.26 Total: -89.28 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 114.21 SS G_CDS: -1.64 Total: 112.57 kcal Atomic # 35 Polarization: 0.72 SS G_CDS: -0.69 Total: 0.02 kcal Total: -68.81 -0.99 -69.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032211368.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.145 kcal (2) G-P(sol) polarization free energy of solvation -68.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds