Wall clock time and date at job start Tue Mar 31 2020 22:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00198 * 2 1 4 4 H 1.48497 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47449 * 300.00377 * 3 2 1 6 6 H 1.48504 * 109.46962 * 60.00485 * 3 2 1 7 7 C 1.38818 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00182 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99726 * 0.02562 * 7 2 1 10 10 S 1.65602 * 119.99737 * 185.44998 * 9 7 2 11 11 O 1.42097 * 106.40323 * 311.05149 * 10 9 7 12 12 O 1.42104 * 106.39993 * 178.12616 * 10 9 7 13 13 C 1.76205 * 107.21690 * 64.59150 * 10 9 7 14 14 C 1.38241 * 119.99480 * 244.15891 * 13 10 9 15 15 C 1.38202 * 120.02743 * 180.25491 * 14 13 10 16 16 C 1.38356 * 120.01207 * 359.76968 * 15 14 13 17 17 Br 1.89095 * 120.00336 * 179.97438 * 16 15 14 18 18 C 1.38285 * 119.99266 * 359.97403 * 16 15 14 19 19 C 1.38333 * 119.99848 * 63.90151 * 13 10 9 20 20 Cl 1.73596 * 120.00945 * 0.02562 * 19 13 10 21 21 H 0.96994 * 119.99603 * 359.97438 * 1 2 3 22 22 H 0.96999 * 119.99990 * 5.44197 * 9 7 2 23 23 H 1.08010 * 119.98973 * 359.97438 * 14 13 10 24 24 H 1.07997 * 120.00104 * 179.74321 * 15 14 13 25 25 H 1.08002 * 120.00858 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 16 2.1479 -3.8191 0.1340 11 8 3.2056 -3.7654 -0.8134 12 8 1.1662 -4.8464 0.1456 13 6 2.9053 -3.8367 1.7249 14 6 4.2833 -3.8480 1.8342 15 6 4.8780 -3.8671 3.0816 16 6 4.0943 -3.8702 4.2218 17 35 4.9083 -3.8971 5.9284 18 6 2.7159 -3.8535 4.1133 19 6 2.1209 -3.8338 2.8643 20 17 0.3905 -3.8135 2.7272 21 1 -0.4849 0.8400 0.0004 22 1 0.3589 -2.3899 -0.0816 23 1 4.8955 -3.8465 0.9443 24 1 5.9545 -3.8802 3.1664 25 1 2.1039 -3.8555 5.0032 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037489301.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:49 Heat of formation + Delta-G solvation = -68.512943 kcal Electronic energy + Delta-G solvation = -17214.171229 eV Core-core repulsion = 14005.266870 eV Total energy + Delta-G solvation = -3208.904359 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 338.912 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.43187 -38.09063 -37.59534 -36.63398 -36.49162 -33.68849 -32.87348 -32.11530 -30.58893 -26.44763 -24.20540 -24.03679 -20.39973 -20.03731 -19.15048 -18.23544 -17.22639 -17.12436 -16.42688 -15.94237 -15.89931 -15.33285 -15.09709 -14.99803 -13.81929 -13.59167 -13.20333 -13.07498 -12.97018 -12.93990 -12.92001 -12.81891 -12.43391 -12.21918 -12.07699 -11.96655 -11.77792 -11.56781 -11.49336 -10.27901 -10.16519 -10.01146 -8.36371 -5.86976 -0.66748 -0.26905 -0.09571 0.19995 0.90450 1.50741 1.52432 1.63281 2.01548 2.29254 2.64160 2.89660 3.22108 3.38920 3.70778 3.84783 4.12992 4.17121 4.47761 4.50358 4.77777 4.84595 5.11945 5.36919 5.58142 6.73233 6.91316 7.30730 8.80431 Molecular weight = 338.91amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.005086 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.321049 B = 5503.968347 C = 6211.089348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.008 4.008 3 Si 0.979 3.021 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.295 4.295 8 H 0.110 0.890 9 N -0.951 5.951 10 S 2.625 3.375 11 O -0.989 6.989 12 O -1.002 7.002 13 C -0.660 4.660 14 C -0.019 4.019 15 C -0.101 4.101 16 C -0.045 4.045 17 Br -0.009 7.009 18 C -0.108 4.108 19 C 0.044 3.956 20 Cl -0.046 7.046 21 H 0.276 0.724 22 H 0.408 0.592 23 H 0.166 0.834 24 H 0.178 0.822 25 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.788 -5.001 12.741 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.212 4.212 3 Si 0.803 3.197 4 H -0.179 1.179 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.434 4.434 8 H 0.128 0.872 9 N -0.703 5.703 10 S 2.717 3.283 11 O -0.979 6.979 12 O -0.991 6.991 13 C -0.743 4.743 14 C -0.039 4.039 15 C -0.122 4.122 16 C -0.126 4.126 17 Br 0.077 6.923 18 C -0.129 4.129 19 C 0.015 3.985 20 Cl -0.017 7.017 21 H 0.085 0.915 22 H 0.243 0.757 23 H 0.183 0.817 24 H 0.196 0.804 25 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 10.086 -5.718 12.821 17.286 hybrid contribution -0.737 1.000 0.188 1.257 sum 9.349 -4.718 13.009 16.700 Atomic orbital electron populations 1.69794 1.07269 1.29009 1.48755 1.26038 0.96309 1.02303 0.96580 0.85062 0.79150 0.77638 0.77849 1.17860 1.20447 1.20309 1.19627 0.92594 0.83396 1.47814 0.87239 1.51520 1.17958 1.20014 1.80762 1.05616 0.72974 0.73671 0.76085 1.93439 1.57448 1.87439 1.59568 1.93453 1.59734 1.57926 1.88001 1.31676 1.05357 1.13729 1.23577 1.21241 0.91438 0.91272 0.99907 1.21670 1.02140 0.98427 0.89936 1.22107 0.94296 1.02577 0.93570 1.96769 1.80296 1.97273 1.18003 1.21252 0.94054 1.00869 0.96689 1.20494 0.85434 0.98300 0.94256 1.98439 1.08986 1.96184 1.98089 0.91483 0.75681 0.81687 0.80417 0.81774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.19 13.07 21.65 0.28 -46.91 15 2 C -0.01 -0.37 5.50 84.86 0.47 0.10 15 3 Si 0.98 38.85 29.55 68.60 2.03 40.87 15 4 H -0.26 -9.55 7.11 99.48 0.71 -8.84 15 5 H -0.28 -11.00 7.11 99.48 0.71 -10.29 15 6 H -0.28 -10.82 7.11 99.48 0.71 -10.12 15 7 C -0.30 -14.51 9.64 84.03 0.81 -13.70 15 8 H 0.11 5.11 7.79 -2.91 -0.02 5.09 15 9 N -0.95 -45.44 5.45 -54.26 -0.30 -45.74 15 10 S 2.62 115.16 5.01 -56.49 -0.28 114.88 15 11 O -0.99 -46.07 16.66 -128.00 -2.13 -48.20 15 12 O -1.00 -46.76 16.58 -128.00 -2.12 -48.88 15 13 C -0.66 -24.58 5.82 22.29 0.13 -24.45 15 14 C -0.02 -0.57 9.55 22.26 0.21 -0.36 15 15 C -0.10 -2.48 9.79 22.29 0.22 -2.26 15 16 C -0.05 -1.13 6.22 22.31 0.14 -0.99 15 17 Br -0.01 -0.18 33.70 -20.37 -0.69 -0.87 15 18 C -0.11 -3.07 9.57 22.31 0.21 -2.86 15 19 C 0.04 1.56 6.30 22.32 0.14 1.70 15 20 Cl -0.05 -1.73 26.47 -2.72 -0.07 -1.80 15 21 H 0.28 13.51 8.31 -92.71 -0.77 12.74 15 22 H 0.41 20.23 8.04 -96.74 -0.78 19.45 15 23 H 0.17 4.65 7.34 -2.91 -0.02 4.63 15 24 H 0.18 3.00 8.06 -2.91 -0.02 2.97 15 25 H 0.16 3.90 8.06 -2.91 -0.02 3.88 15 Total: -1.00 -59.48 277.78 -0.47 -59.95 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.48 Total: 19.52 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 2.33 Total: -42.83 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -0.01 Total: -92.64 kcal Atomic # 8 Polarization: -92.83 SS G_CDS: -4.25 Total: -97.08 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.87 kcal Atomic # 16 Polarization: 115.16 SS G_CDS: -0.28 Total: 114.88 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.07 Total: -1.80 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -0.69 Total: -0.87 kcal Total: -59.48 -0.47 -59.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037489301.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.561 kcal (2) G-P(sol) polarization free energy of solvation -59.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds