Wall clock time and date at job start Tue Mar 31 2020 22:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46885 * 2 1 4 4 C 1.50697 * 109.46993 * 239.99921 * 2 1 3 5 5 H 1.08003 * 119.99928 * 239.99528 * 4 2 1 6 6 C 1.37873 * 120.00175 * 60.00199 * 4 2 1 7 7 N 1.31513 * 120.00030 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00031 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47093 * 89.99793 * 8 6 4 10 10 H 1.48505 * 109.47294 * 209.99592 * 8 6 4 11 11 H 1.48492 * 109.47280 * 329.99502 * 8 6 4 12 12 N 1.46498 * 109.46883 * 119.99724 * 2 1 3 13 13 S 1.65602 * 119.99954 * 264.99830 * 12 2 1 14 14 O 1.42098 * 106.40229 * 311.46511 * 13 12 2 15 15 O 1.42105 * 106.39923 * 178.54556 * 13 12 2 16 16 C 1.76201 * 107.21611 * 65.00520 * 13 12 2 17 17 C 1.33363 * 125.19197 * 90.00286 * 16 13 12 18 18 C 1.38455 * 114.92699 * 179.97438 * 17 16 13 19 19 C 1.33476 * 114.89443 * 359.97438 * 18 17 16 20 20 Br 1.89095 * 125.20610 * 180.02562 * 19 18 17 21 21 S 1.75877 * 125.19344 * 269.97291 * 16 13 12 22 22 H 1.09005 * 109.46910 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.46944 * 299.99783 * 1 2 3 24 24 H 1.08992 * 109.47312 * 60.00188 * 1 2 3 25 25 H 0.97001 * 120.00428 * 180.02562 * 7 6 4 26 26 H 0.97001 * 119.99968 * 85.00242 * 12 2 1 27 27 H 1.08001 * 122.53702 * 0.23946 * 17 16 13 28 28 H 1.07995 * 122.54992 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3449 -2.1617 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6309 -1.7566 -3.7119 12 7 2.0183 -0.6906 1.1962 13 16 2.4122 0.1773 2.5505 14 8 3.2436 1.2444 2.1155 15 8 2.8125 -0.7697 3.5315 16 6 0.9275 0.9148 3.1474 17 6 0.0918 0.3584 4.0252 18 6 -1.0133 1.1276 4.3474 19 6 -1.0742 2.3098 3.7306 20 35 -2.4504 3.5870 3.9550 21 16 0.3216 2.4975 2.6770 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 0.7082 1.1608 -3.4844 26 1 2.1110 -1.6561 1.1949 27 1 0.2663 -0.6167 4.4557 28 1 -1.7686 0.7964 5.0446 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336716.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:15 Heat of formation + Delta-G solvation = -41.360957 kcal Electronic energy + Delta-G solvation = -17370.795532 eV Core-core repulsion = 14300.945373 eV Total energy + Delta-G solvation = -3069.850159 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 338.939 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.95975 -36.76971 -35.53618 -35.43918 -32.26082 -32.16379 -28.88844 -28.37188 -25.31098 -24.18297 -21.04263 -20.46386 -18.84232 -18.23024 -17.39894 -16.28907 -15.96649 -15.27013 -14.87377 -14.57978 -13.76666 -13.65565 -13.12017 -12.80171 -12.68502 -12.26788 -11.84980 -11.70910 -11.62586 -11.51403 -11.37238 -11.11730 -11.02639 -10.86166 -10.65658 -10.49783 -10.40586 -10.14914 -9.29880 -9.11226 -8.70811 -8.56665 -8.35105 -6.16886 -4.24431 0.26087 0.77526 0.92220 1.60909 1.66846 2.29244 3.23964 3.31228 3.34366 3.60364 4.12079 4.32945 4.89262 5.02664 5.15829 5.24228 5.62038 5.66600 6.07892 6.24047 6.69331 6.75026 6.92902 7.49409 7.60273 7.77515 7.94558 8.19628 8.77782 9.41680 10.89265 Molecular weight = 338.94amu Principal moments of inertia in cm(-1) A = 0.016532 B = 0.004360 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.302248 B = 6420.677127 C = 7631.380558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.266 3.734 3 H 0.051 0.949 4 C -0.522 4.522 5 H 0.066 0.934 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -1.093 6.093 13 S 2.708 3.292 14 O -0.952 6.952 15 O -0.971 6.971 16 C -0.768 4.768 17 C -0.006 4.006 18 C -0.120 4.120 19 C -0.188 4.188 20 Br 0.012 6.988 21 S 0.301 5.699 22 H 0.035 0.965 23 H 0.012 0.988 24 H 0.096 0.904 25 H 0.265 0.735 26 H 0.412 0.588 27 H 0.160 0.840 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.943 3.897 13.495 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.562 4.562 5 H 0.084 0.916 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.855 5.855 13 S 2.791 3.209 14 O -0.942 6.942 15 O -0.961 6.961 16 C -0.968 4.968 17 C -0.041 4.041 18 C -0.155 4.155 19 C -0.387 4.387 20 Br 0.096 6.904 21 S 0.569 5.431 22 H 0.054 0.946 23 H 0.031 0.969 24 H 0.114 0.886 25 H 0.075 0.925 26 H 0.246 0.754 27 H 0.178 0.822 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.247 6.017 12.810 15.900 hybrid contribution -0.855 -2.084 0.054 2.253 sum -8.102 3.933 12.865 15.704 Atomic orbital electron populations 1.22344 0.98457 1.00150 1.01077 1.18687 0.90884 0.93138 0.81090 0.93082 1.21186 1.32093 1.13236 0.89663 0.91615 1.24908 0.94842 0.94993 0.99086 1.69853 1.36094 1.22513 1.24035 0.86430 0.79282 0.79254 0.82061 1.20592 1.21054 1.19754 1.55531 1.83592 1.19272 1.27115 1.01567 0.72805 0.73695 0.72819 1.93601 1.62405 1.56751 1.81458 1.93537 1.80584 1.61475 1.60527 1.36519 1.29983 1.12214 1.18119 1.19835 0.90784 1.00279 0.93208 1.20345 1.00137 0.92770 1.02278 1.26821 1.02613 1.00738 1.08575 1.96729 1.44545 1.52465 1.96643 1.84567 1.10462 1.10635 1.37476 0.94588 0.96882 0.88576 0.92497 0.75358 0.82250 0.82921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.29 37.16 0.35 -3.17 15 2 C 0.27 6.19 2.90 -69.08 -0.20 5.99 15 3 H 0.05 1.30 7.50 -51.93 -0.39 0.91 15 4 C -0.52 -13.40 8.76 -34.44 -0.30 -13.70 15 5 H 0.07 1.64 7.81 -52.48 -0.41 1.23 15 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 15 7 N -0.89 -23.74 11.32 55.43 0.63 -23.11 15 8 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 15 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 10 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 11 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 12 N -1.09 -21.31 5.46 -5.88 -0.03 -21.34 15 13 S 2.71 50.07 5.86 -107.50 -0.63 49.44 15 14 O -0.95 -20.49 17.25 -57.17 -0.99 -21.48 15 15 O -0.97 -18.37 17.80 -57.17 -1.02 -19.39 15 16 C -0.77 -12.39 5.54 29.03 0.16 -12.23 15 17 C -0.01 -0.08 9.84 -41.20 -0.41 -0.48 15 18 C -0.12 -1.46 10.11 -41.17 -0.42 -1.88 15 19 C -0.19 -2.50 6.97 29.07 0.20 -2.30 15 20 Br 0.01 0.14 34.07 -68.01 -2.32 -2.18 15 21 S 0.30 4.72 22.31 -107.50 -2.40 2.32 15 22 H 0.03 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.01 0.24 6.10 -51.93 -0.32 -0.08 15 24 H 0.10 2.34 6.07 -51.93 -0.32 2.02 15 25 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 26 H 0.41 7.17 8.83 -34.47 -0.30 6.87 15 27 H 0.16 1.79 8.05 -52.49 -0.42 1.37 15 28 H 0.15 1.41 8.06 -52.49 -0.42 0.99 15 LS Contribution 292.51 15.07 4.41 4.41 Total: -1.00 -29.47 292.51 -10.21 -39.68 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -2.14 Total: 2.52 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -0.71 Total: -26.18 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.60 Total: -44.44 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -2.00 Total: -40.86 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 54.79 SS G_CDS: -3.03 Total: 51.76 kcal Atomic # 35 Polarization: 0.14 SS G_CDS: -2.32 Total: -2.18 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.47 -10.21 -39.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336716.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.679 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds