Wall clock time and date at job start Tue Mar 31 2020 22:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46885 * 2 1 4 4 C 1.50697 * 109.46993 * 239.99921 * 2 1 3 5 5 H 1.08003 * 119.99928 * 239.99528 * 4 2 1 6 6 C 1.37873 * 120.00175 * 60.00199 * 4 2 1 7 7 N 1.31513 * 120.00030 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00031 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47093 * 89.99793 * 8 6 4 10 10 H 1.48505 * 109.47294 * 209.99592 * 8 6 4 11 11 H 1.48492 * 109.47280 * 329.99502 * 8 6 4 12 12 N 1.46498 * 109.46883 * 119.99724 * 2 1 3 13 13 S 1.65602 * 119.99954 * 264.99830 * 12 2 1 14 14 O 1.42098 * 106.40229 * 311.46511 * 13 12 2 15 15 O 1.42105 * 106.39923 * 178.54556 * 13 12 2 16 16 C 1.76201 * 107.21611 * 65.00520 * 13 12 2 17 17 C 1.33363 * 125.19197 * 90.00286 * 16 13 12 18 18 C 1.38455 * 114.92699 * 179.97438 * 17 16 13 19 19 C 1.33476 * 114.89443 * 359.97438 * 18 17 16 20 20 Br 1.89095 * 125.20610 * 180.02562 * 19 18 17 21 21 S 1.75877 * 125.19344 * 269.97291 * 16 13 12 22 22 H 1.09005 * 109.46910 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.46944 * 299.99783 * 1 2 3 24 24 H 1.08992 * 109.47312 * 60.00188 * 1 2 3 25 25 H 0.97001 * 120.00428 * 180.02562 * 7 6 4 26 26 H 0.97001 * 119.99968 * 85.00242 * 12 2 1 27 27 H 1.08001 * 122.53702 * 0.23946 * 17 16 13 28 28 H 1.07995 * 122.54992 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3449 -2.1617 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6309 -1.7566 -3.7119 12 7 2.0183 -0.6906 1.1962 13 16 2.4122 0.1773 2.5505 14 8 3.2436 1.2444 2.1155 15 8 2.8125 -0.7697 3.5315 16 6 0.9275 0.9148 3.1474 17 6 0.0918 0.3584 4.0252 18 6 -1.0133 1.1276 4.3474 19 6 -1.0742 2.3098 3.7306 20 35 -2.4504 3.5870 3.9550 21 16 0.3216 2.4975 2.6770 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 0.7082 1.1608 -3.4844 26 1 2.1110 -1.6561 1.1949 27 1 0.2663 -0.6167 4.4557 28 1 -1.7686 0.7964 5.0446 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050336716.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:15 Heat of formation + Delta-G solvation = -61.942091 kcal Electronic energy + Delta-G solvation = -17371.687997 eV Core-core repulsion = 14300.945373 eV Total energy + Delta-G solvation = -3070.742624 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 338.939 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.05916 -38.30632 -37.28710 -37.00073 -34.13689 -33.20528 -30.20943 -29.90622 -27.24057 -25.30270 -22.85287 -21.68135 -20.13400 -19.65260 -19.01914 -17.87886 -17.37034 -16.97977 -16.39131 -15.91084 -15.35352 -14.86463 -14.54873 -14.15817 -14.04808 -13.80134 -13.56231 -13.25781 -13.20288 -13.05361 -12.81107 -12.77219 -12.48366 -12.26524 -12.19017 -12.05961 -11.99139 -11.47160 -11.13063 -10.60587 -10.25472 -10.08494 -9.71936 -8.13370 -6.27289 -0.89582 -0.58375 -0.21899 0.50954 0.53570 1.24745 1.45941 1.48004 1.57223 2.12235 2.45623 2.67146 3.16636 3.49555 4.01377 4.20764 4.50565 4.55928 4.63956 4.89945 5.01742 5.07392 5.13815 5.59293 5.76261 6.04798 6.10553 6.40383 6.82342 7.41980 8.91834 Molecular weight = 338.94amu Principal moments of inertia in cm(-1) A = 0.016532 B = 0.004360 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.302248 B = 6420.677127 C = 7631.380558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.272 3.728 3 H 0.022 0.978 4 C -0.543 4.543 5 H 0.067 0.933 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.961 3.039 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.271 1.271 12 N -1.094 6.094 13 S 2.726 3.274 14 O -0.990 6.990 15 O -0.975 6.975 16 C -0.790 4.790 17 C 0.015 3.985 18 C -0.112 4.112 19 C -0.180 4.180 20 Br 0.036 6.964 21 S 0.244 5.756 22 H 0.041 0.959 23 H 0.036 0.964 24 H 0.070 0.930 25 H 0.266 0.734 26 H 0.421 0.579 27 H 0.187 0.813 28 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.313 2.916 14.750 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.166 3.834 3 H 0.040 0.960 4 C -0.582 4.582 5 H 0.085 0.915 6 C -0.182 4.182 7 N -0.550 5.550 8 Si 0.786 3.214 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.856 5.856 13 S 2.814 3.186 14 O -0.981 6.981 15 O -0.966 6.966 16 C -0.994 4.994 17 C -0.021 4.021 18 C -0.147 4.147 19 C -0.379 4.379 20 Br 0.120 6.880 21 S 0.510 5.490 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.089 0.911 25 H 0.075 0.925 26 H 0.256 0.744 27 H 0.205 0.795 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -8.581 5.003 14.058 17.213 hybrid contribution -0.531 -1.729 -0.190 1.819 sum -9.112 3.274 13.868 16.913 Atomic orbital electron populations 1.22154 0.97358 1.00370 1.00962 1.18368 0.91626 0.91670 0.81695 0.96033 1.21576 1.32208 1.13489 0.90952 0.91503 1.25649 0.95089 0.95674 1.01747 1.69974 1.36904 1.23546 1.24548 0.85517 0.78846 0.78266 0.78752 1.19751 1.21087 1.19544 1.55318 1.83750 1.19749 1.26806 1.00625 0.72943 0.72852 0.72197 1.93551 1.64650 1.57811 1.82059 1.93524 1.81220 1.61695 1.60135 1.35965 1.30075 1.12774 1.20574 1.20331 0.89821 1.01010 0.90979 1.20746 1.00158 0.91750 1.02008 1.27002 1.01916 1.01621 1.07386 1.96767 1.42944 1.51929 1.96391 1.84797 1.12939 1.11505 1.39736 0.94005 0.94554 0.91115 0.92498 0.74350 0.79545 0.79067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.51 9.29 71.98 0.67 -5.84 15 2 C 0.27 12.81 2.90 44.25 0.13 12.94 15 3 H 0.02 1.15 7.50 -2.39 -0.02 1.14 15 4 C -0.54 -28.10 8.76 25.60 0.22 -27.87 15 5 H 0.07 3.34 7.81 -2.91 -0.02 3.32 15 6 C 0.02 0.99 5.30 84.65 0.45 1.44 15 7 N -0.91 -49.51 11.32 21.45 0.24 -49.27 15 8 Si 0.96 41.65 29.54 68.60 2.03 43.68 15 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 10 H -0.29 -12.29 7.11 99.48 0.71 -11.58 15 11 H -0.27 -11.54 7.11 99.48 0.71 -10.84 15 12 N -1.09 -42.62 5.46 -172.52 -0.94 -43.56 15 13 S 2.73 100.45 5.86 -56.49 -0.33 100.12 15 14 O -0.99 -43.85 17.25 -128.00 -2.21 -46.06 15 15 O -0.98 -35.83 17.80 -128.00 -2.28 -38.11 15 16 C -0.79 -24.57 5.54 66.72 0.37 -24.20 15 17 C 0.01 0.35 9.84 21.22 0.21 0.56 15 18 C -0.11 -2.32 10.11 21.24 0.21 -2.10 15 19 C -0.18 -4.36 6.97 66.74 0.46 -3.89 15 20 Br 0.04 0.72 34.07 -20.37 -0.69 0.02 15 21 S 0.24 7.56 22.31 -56.49 -1.26 6.30 15 22 H 0.04 1.72 8.14 -2.38 -0.02 1.70 15 23 H 0.04 1.37 6.10 -2.39 -0.01 1.36 15 24 H 0.07 3.48 6.07 -2.39 -0.01 3.47 15 25 H 0.27 13.73 8.31 -92.71 -0.77 12.96 15 26 H 0.42 14.47 8.83 -96.74 -0.85 13.61 15 27 H 0.19 3.41 8.05 -2.91 -0.02 3.39 15 28 H 0.19 2.50 8.06 -2.91 -0.02 2.48 15 Total: -1.00 -63.15 292.51 -2.36 -65.50 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.36 Total: 10.34 kcal Atomic # 6 Polarization: -51.69 SS G_CDS: 2.73 Total: -48.96 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -0.70 Total: -92.83 kcal Atomic # 8 Polarization: -79.68 SS G_CDS: -4.49 Total: -84.17 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 108.01 SS G_CDS: -1.59 Total: 106.41 kcal Atomic # 35 Polarization: 0.72 SS G_CDS: -0.69 Total: 0.02 kcal Total: -63.15 -2.36 -65.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336716.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.559 kcal (2) G-P(sol) polarization free energy of solvation -63.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds