Wall clock time and date at job start Tue Mar 31 2020 22:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99438 * 2 1 4 4 H 1.48507 * 109.46898 * 239.99798 * 3 2 1 5 5 H 1.48498 * 109.47407 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47189 * 120.00198 * 3 2 1 7 7 C 1.37873 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00432 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99719 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46754 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47045 * 179.97438 * 10 9 7 12 12 S 1.65597 * 120.00079 * 164.72323 * 11 10 9 13 13 O 1.42100 * 106.40448 * 178.54099 * 12 11 10 14 14 O 1.42103 * 106.40365 * 311.46606 * 12 11 10 15 15 C 1.76197 * 107.21750 * 65.00357 * 12 11 10 16 16 S 1.75887 * 125.20091 * 0.02562 * 15 12 11 17 17 C 1.75887 * 90.97882 * 179.97438 * 16 15 12 18 18 C 1.33401 * 109.60484 * 359.97438 * 17 16 15 19 19 C 1.33431 * 125.20512 * 179.71558 * 15 12 11 20 20 Br 1.89097 * 122.54569 * 0.04094 * 19 15 12 21 21 H 0.96998 * 120.00519 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.46918 * 60.00485 * 9 7 2 23 23 H 1.08996 * 109.46854 * 300.00443 * 9 7 2 24 24 H 1.08999 * 109.47565 * 60.00266 * 10 9 7 25 25 H 1.09000 * 109.47473 * 300.00267 * 10 9 7 26 26 H 0.97005 * 119.99811 * 345.00302 * 11 10 9 27 27 H 1.07998 * 125.19856 * 180.02562 * 17 16 15 28 28 H 1.07998 * 122.53863 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 7 1.5131 -4.9308 0.0001 12 16 2.2971 -6.3396 -0.3776 13 8 1.3359 -7.3790 -0.2556 14 8 3.0216 -6.0874 -1.5739 15 6 3.4976 -6.6219 0.8808 16 16 3.7790 -5.5760 2.2666 17 6 5.0511 -6.6411 2.8504 18 6 5.1890 -7.6729 2.0161 19 6 4.3283 -7.6649 0.9314 20 35 4.3334 -9.0260 -0.3813 21 1 -0.4851 0.8400 -0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6248 -2.5570 0.8896 24 1 2.8721 -3.6042 0.8894 25 1 2.8722 -3.6042 -0.8905 26 1 0.5679 -4.9451 0.2178 27 1 5.6314 -6.4842 3.7476 28 1 5.9142 -8.4568 2.1766 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138386.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:49 Heat of formation + Delta-G solvation = -42.962094 kcal Electronic energy + Delta-G solvation = -16945.214413 eV Core-core repulsion = 13875.294823 eV Total energy + Delta-G solvation = -3069.919590 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 338.939 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.26416 -37.01630 -35.70416 -35.56015 -32.81823 -31.77357 -29.61165 -29.23630 -24.58884 -24.46304 -21.35095 -20.57097 -19.21402 -18.65835 -17.02472 -16.39407 -16.27549 -15.69956 -15.08780 -14.62213 -14.36152 -13.98376 -13.77141 -13.43497 -12.91545 -12.61562 -11.97638 -11.90484 -11.82861 -11.57859 -11.37123 -11.18751 -11.09093 -11.03039 -10.68770 -10.65931 -10.55181 -9.66832 -9.56887 -9.34762 -9.14588 -8.69519 -8.45100 -6.12277 -4.16329 0.09946 0.42292 0.70158 1.36766 1.69234 1.95740 3.13948 3.27712 3.32873 3.35267 3.70908 4.37178 4.54551 4.78071 4.79768 5.24548 5.24804 5.48336 5.60024 5.70574 6.02890 6.32979 6.60279 7.26339 7.49058 7.57574 7.85115 8.21859 8.89001 9.48625 10.98964 Molecular weight = 338.94amu Principal moments of inertia in cm(-1) A = 0.023789 B = 0.003697 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.718049 B = 7571.587582 C = 8162.719264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.019 3.981 10 C 0.113 3.887 11 N -1.110 6.110 12 S 2.704 3.296 13 O -0.948 6.948 14 O -0.935 6.935 15 C -0.764 4.764 16 S 0.277 5.723 17 C -0.185 4.185 18 C -0.140 4.140 19 C 0.018 3.982 20 Br -0.012 7.012 21 H 0.263 0.737 22 H 0.029 0.971 23 H 0.026 0.974 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.421 0.579 27 H 0.181 0.819 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.871 -17.305 5.784 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.020 4.020 10 C -0.011 4.011 11 N -0.874 5.874 12 S 2.786 3.214 13 O -0.938 6.938 14 O -0.925 6.925 15 C -0.964 4.964 16 S 0.543 5.457 17 C -0.323 4.323 18 C -0.171 4.171 19 C -0.080 4.080 20 Br 0.072 6.928 21 H 0.073 0.927 22 H 0.047 0.953 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.257 0.743 27 H 0.198 0.802 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.185 -16.855 5.130 19.869 hybrid contribution 1.166 0.042 0.665 1.343 sum 10.351 -16.813 5.796 20.577 Atomic orbital electron populations 1.69940 1.06083 1.27076 1.49909 1.24990 0.94880 0.99364 0.94934 0.86595 0.79549 0.82753 0.78753 1.20051 1.21239 1.20143 1.21030 0.93190 0.90400 1.51959 0.92214 1.19289 0.93923 0.90263 0.98483 1.21837 0.96267 0.82618 1.00427 1.55558 1.21785 1.22068 1.87979 1.01929 0.73160 0.72881 0.73471 1.93605 1.58677 1.55078 1.86410 1.93627 1.73861 1.84755 1.40252 1.36206 1.26075 1.09029 1.25107 1.84668 1.29229 1.20191 1.11579 1.26289 1.03181 0.98672 1.04184 1.20123 1.01756 1.01228 0.94021 1.20322 0.97325 0.93901 0.96463 1.96852 1.98189 1.47629 1.50114 0.92697 0.95295 0.95561 0.92989 0.90764 0.74288 0.80185 0.82630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 13.29 55.43 0.74 -24.70 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 15 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 7 C -0.53 -13.89 9.11 -34.44 -0.31 -14.20 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 15 9 C 0.02 0.46 5.12 -27.88 -0.14 0.31 15 10 C 0.11 2.15 5.91 -4.04 -0.02 2.13 15 11 N -1.11 -18.41 5.81 -10.61 -0.06 -18.47 15 12 S 2.70 45.44 5.05 -107.50 -0.54 44.89 15 13 O -0.95 -16.99 18.02 -57.17 -1.03 -18.02 15 14 O -0.94 -17.96 17.49 -57.17 -1.00 -18.96 15 15 C -0.76 -11.14 6.47 29.05 0.19 -10.95 15 16 S 0.28 3.32 21.09 -107.50 -2.27 1.05 15 17 C -0.18 -1.71 11.23 29.04 0.33 -1.38 15 18 C -0.14 -1.45 10.04 -41.19 -0.41 -1.87 15 19 C 0.02 0.24 6.17 -41.18 -0.25 -0.02 15 20 Br -0.01 -0.16 33.13 -68.01 -2.25 -2.42 15 21 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 22 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 15 24 H 0.05 0.89 6.26 -51.93 -0.33 0.57 15 25 H 0.07 1.45 7.75 -51.93 -0.40 1.04 15 26 H 0.42 6.31 8.65 -34.47 -0.30 6.01 15 27 H 0.18 1.01 8.06 -52.49 -0.42 0.59 15 28 H 0.16 1.19 8.06 -52.49 -0.42 0.76 15 LS Contribution 295.33 15.07 4.45 4.45 Total: -1.00 -31.46 295.33 -9.98 -41.44 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -2.26 Total: -0.46 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -0.73 Total: -24.43 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.67 Total: -43.17 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -2.03 Total: -36.98 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 48.76 SS G_CDS: -2.81 Total: 45.95 kcal Atomic # 35 Polarization: -0.16 SS G_CDS: -2.25 Total: -2.42 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.46 -9.98 -41.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138386.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.527 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds