Wall clock time and date at job start Tue Mar 31 2020 22:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99438 * 2 1 4 4 H 1.48507 * 109.46898 * 239.99798 * 3 2 1 5 5 H 1.48498 * 109.47407 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47189 * 120.00198 * 3 2 1 7 7 C 1.37873 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00432 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99719 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46754 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47045 * 179.97438 * 10 9 7 12 12 S 1.65597 * 120.00079 * 164.72323 * 11 10 9 13 13 O 1.42100 * 106.40448 * 178.54099 * 12 11 10 14 14 O 1.42103 * 106.40365 * 311.46606 * 12 11 10 15 15 C 1.76197 * 107.21750 * 65.00357 * 12 11 10 16 16 S 1.75887 * 125.20091 * 0.02562 * 15 12 11 17 17 C 1.75887 * 90.97882 * 179.97438 * 16 15 12 18 18 C 1.33401 * 109.60484 * 359.97438 * 17 16 15 19 19 C 1.33431 * 125.20512 * 179.71558 * 15 12 11 20 20 Br 1.89097 * 122.54569 * 0.04094 * 19 15 12 21 21 H 0.96998 * 120.00519 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.46918 * 60.00485 * 9 7 2 23 23 H 1.08996 * 109.46854 * 300.00443 * 9 7 2 24 24 H 1.08999 * 109.47565 * 60.00266 * 10 9 7 25 25 H 1.09000 * 109.47473 * 300.00267 * 10 9 7 26 26 H 0.97005 * 119.99811 * 345.00302 * 11 10 9 27 27 H 1.07998 * 125.19856 * 180.02562 * 17 16 15 28 28 H 1.07998 * 122.53863 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 7 1.5131 -4.9308 0.0001 12 16 2.2971 -6.3396 -0.3776 13 8 1.3359 -7.3790 -0.2556 14 8 3.0216 -6.0874 -1.5739 15 6 3.4976 -6.6219 0.8808 16 16 3.7790 -5.5760 2.2666 17 6 5.0511 -6.6411 2.8504 18 6 5.1890 -7.6729 2.0161 19 6 4.3283 -7.6649 0.9314 20 35 4.3334 -9.0260 -0.3813 21 1 -0.4851 0.8400 -0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6248 -2.5570 0.8896 24 1 2.8721 -3.6042 0.8894 25 1 2.8722 -3.6042 -0.8905 26 1 0.5679 -4.9451 0.2178 27 1 5.6314 -6.4842 3.7476 28 1 5.9142 -8.4568 2.1766 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054138386.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:49 Heat of formation + Delta-G solvation = -65.759470 kcal Electronic energy + Delta-G solvation = -16946.202982 eV Core-core repulsion = 13875.294823 eV Total energy + Delta-G solvation = -3070.908158 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 338.939 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.16769 -38.41851 -37.15689 -37.09202 -34.75901 -32.72866 -31.06215 -30.58393 -26.45800 -25.37224 -23.08286 -21.70557 -20.23383 -19.94230 -18.54842 -18.11313 -17.33242 -17.14758 -16.48030 -16.06569 -15.74593 -15.57135 -14.85728 -14.44073 -14.24531 -13.85010 -13.48866 -13.38788 -13.32304 -13.25865 -12.98234 -12.66189 -12.46890 -12.36754 -12.06349 -11.99882 -11.68551 -11.51940 -11.32252 -10.67699 -10.49240 -10.42749 -9.64285 -8.18417 -6.29061 -0.86264 -0.85726 -0.30238 0.49569 0.72620 1.12063 1.45994 1.48364 1.55721 1.83903 2.41784 2.45180 3.16896 3.43930 3.78119 3.91114 4.11517 4.45638 4.53151 4.68688 4.75016 4.89371 4.93931 5.50536 5.62515 5.81011 5.93654 6.21661 6.86031 7.40255 8.93292 Molecular weight = 338.94amu Principal moments of inertia in cm(-1) A = 0.023789 B = 0.003697 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.718049 B = 7571.587582 C = 8162.719264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.070 0.930 9 C 0.021 3.979 10 C 0.126 3.874 11 N -1.109 6.109 12 S 2.718 3.282 13 O -0.965 6.965 14 O -0.967 6.967 15 C -0.798 4.798 16 S 0.266 5.734 17 C -0.148 4.148 18 C -0.150 4.150 19 C 0.017 3.983 20 Br -0.020 7.020 21 H 0.264 0.736 22 H 0.002 0.998 23 H 0.015 0.985 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.427 0.573 27 H 0.226 0.774 28 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.182 -17.433 7.558 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.088 0.912 9 C -0.017 4.017 10 C 0.001 3.999 11 N -0.873 5.873 12 S 2.804 3.196 13 O -0.956 6.956 14 O -0.957 6.957 15 C -1.002 5.002 16 S 0.532 5.468 17 C -0.286 4.286 18 C -0.180 4.180 19 C -0.083 4.083 20 Br 0.064 6.936 21 H 0.073 0.927 22 H 0.020 0.980 23 H 0.033 0.967 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.264 0.736 27 H 0.243 0.757 28 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 11.469 -16.986 6.876 21.618 hybrid contribution 0.503 -0.006 0.199 0.541 sum 11.972 -16.992 7.074 21.957 Atomic orbital electron populations 1.70072 1.07728 1.27929 1.51216 1.25893 0.95695 1.03174 0.94632 0.85536 0.78276 0.78167 0.79304 1.19466 1.21284 1.18667 1.21523 0.93988 0.91552 1.51180 0.91193 1.19156 0.94338 0.91646 0.96609 1.21529 0.95184 0.81835 1.01336 1.55363 1.22246 1.21412 1.88230 1.01063 0.72963 0.72215 0.73367 1.93577 1.59771 1.55305 1.86898 1.93584 1.74348 1.85005 1.42755 1.35643 1.27142 1.11234 1.26216 1.84673 1.30715 1.20727 1.10696 1.26798 1.00934 0.96361 1.04534 1.20438 1.01901 1.02588 0.93026 1.20714 0.97419 0.93145 0.97010 1.96847 1.98170 1.47730 1.50812 0.92734 0.97951 0.96675 0.90720 0.91352 0.73629 0.75735 0.79523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.85 13.29 21.45 0.28 -53.57 15 2 C 0.00 0.25 5.46 84.65 0.46 0.71 15 3 Si 0.96 41.96 29.54 68.60 2.03 43.99 15 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 15 5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 15 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 15 7 C -0.54 -28.69 9.11 25.60 0.23 -28.45 15 8 H 0.07 3.46 7.74 -2.91 -0.02 3.43 15 9 C 0.02 1.03 5.12 29.85 0.15 1.18 15 10 C 0.13 4.83 5.91 86.38 0.51 5.34 15 11 N -1.11 -37.30 5.81 -187.48 -1.09 -38.39 15 12 S 2.72 91.97 5.05 -56.49 -0.29 91.69 15 13 O -0.97 -35.04 18.02 -128.00 -2.31 -37.34 15 14 O -0.97 -37.74 17.49 -128.00 -2.24 -39.98 15 15 C -0.80 -22.36 6.47 66.73 0.43 -21.93 15 16 S 0.27 5.76 21.09 -56.49 -1.19 4.57 15 17 C -0.15 -2.08 11.23 66.72 0.75 -1.33 15 18 C -0.15 -2.55 10.04 21.23 0.21 -2.34 15 19 C 0.02 0.41 6.17 21.24 0.13 0.54 15 20 Br -0.02 -0.52 33.13 -20.37 -0.67 -1.19 15 21 H 0.26 14.49 8.31 -92.71 -0.77 13.72 15 22 H 0.00 0.11 8.14 -2.39 -0.02 0.09 15 23 H 0.01 0.75 8.14 -2.39 -0.02 0.73 15 24 H 0.07 2.50 6.26 -2.39 -0.01 2.49 15 25 H 0.07 2.68 7.75 -2.39 -0.02 2.66 15 26 H 0.43 13.18 8.65 -96.74 -0.84 12.34 15 27 H 0.23 1.10 8.06 -2.91 -0.02 1.08 15 28 H 0.19 1.99 8.06 -2.91 -0.02 1.97 15 Total: -1.00 -68.30 295.33 -2.22 -70.52 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 0.37 Total: 5.99 kcal Atomic # 6 Polarization: -49.16 SS G_CDS: 2.88 Total: -46.27 kcal Atomic # 7 Polarization: -91.16 SS G_CDS: -0.80 Total: -91.96 kcal Atomic # 8 Polarization: -72.78 SS G_CDS: -4.54 Total: -77.32 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: 97.73 SS G_CDS: -1.48 Total: 96.25 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -0.67 Total: -1.19 kcal Total: -68.30 -2.22 -70.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138386.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.760 kcal (2) G-P(sol) polarization free energy of solvation -68.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds